BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24690.1
Length=2130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942027 jgi|Araly1|942027|scaffold_602571.1 2662 0.0
Ahg489330 jgi|Araly1|489330|fgenesh2_kg.6__2464__AT5G24680.1 73.1 8e-12
> Ahg942027 jgi|Araly1|942027|scaffold_602571.1
Length=1603
Score = 2662 bits (1441), Expect = 0.0
Identities = 1551/1605 (97%), Gaps = 3/1605 (0%)
Strand=Plus/Plus
Query 220 TTTTAATCCTGGTAAAGCCATGTCACATATGGTGTTTCAGAGCGTTGTCGCTCCCAAACC 279
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2 TTTTAATCCTGGTGAAGCCATGTCGCATATGGTGTTTCAGAGCGTTGTCGCTCCCAAACC 61
Query 280 CTTATCTCCTCTCAAACCCTGTTTACCTATCCCTCGTCCACTCGTTACTCTGCCTTGTAA 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CTTATCTCCTCTCAAACCCTGTTTACCTATCCCTCGTCCACTCGTTACTCTGCCTTGTAA 121
Query 340 GCTCCGTCGTGGCTTCGTTAGAGCTTCTTCGTCCTCGTTTCTTGTCGATGATTCAGTTTC 399
||||||||| ||||||||||||| |||||||| | |||||||||||||||||||| ||
Sbjct 122 GCTCCGTCGCGGCTTCGTTAGAG---CTTCGTCCGCTTTTCTTGTCGATGATTCAGTATC 178
Query 400 AGGACTCGAGCGTTGCTTACAGTTACCTTCTGGAGTTGAGTTAGGCACATCTTCCTCTGG 459
||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 179 AGGTCTCGAGCGTTGCTTACAGTTACCTTCGGGAGTTGAGTTAGGCCCATCTTCCTCTGG 238
Query 460 CTCTTTCTCTGCAAGTACTCAGATGTGTCCTGTGATGAAAGGCAAATTTGGTTCGGTAGG 519
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 CTCTTTCTCTGCAAGTACTCAGATGTGTCCTGTGATGAAAGGGAAATTTGGTTCGGTAGG 298
Query 520 AGCTGTTACTTTGGAAAAAGGGAAGCTTGATATGACCCAGAAGATTTCTGAGACTAGCCC 579
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 299 AGCTGTAACTTTGGAAAAAGGGAAGCTTGATATGACCCAGAAGATTTCTGAGACCAGCCC 358
Query 580 TGAGATTGCAACTGGAGGAGGGGGTGGAAACATTGGAAAGAGTATCAATAATGGTGGTGG 639
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 359 TGAGATTGCAACTGGAGGAGGTGGTGGAAACATTGGAAAGAGTATCAATAACGGTGGTGG 418
Query 640 Cgatggaggtgacgataatggtgatgatgatgattactttgatgaattcgatgatggtga 699
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 419 CGATGGAGGTGACGATAATGGTGATGATGATGATTATTTTGATGAATTTGATGATGGCGA 478
Query 700 tgagggagatgatgatgGACTTTTTAGGCGTAGGATGTTTCTCGCAGAGATTTTTGATAG 759
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 479 TGAGGGAGATGATGATGGACTTTTTAGGCGTAGGATGTTCCTCGCAGAGATTTTTGATAG 538
Query 760 GAAATTCGTTGATGCTGTGTTGAATGAATGGCAAAAAACAATGATGGATTTACCTGCCGG 819
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 539 GAAATTTGTTGATGCTGTGTTGAACGAATGGCAAAAAACAATGATGGATTTACCTGCTGG 598
Query 820 TCTCCGTCAAGCATATGAAATGGGTTTGGTCAGCTCAGCTCAAATGGTGAAATTCCTTGC 879
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 599 TCTCCGTCAAGCATATGAAATGGGTTTGGTCAGCTCAGCACAAATGGTGAAATTCCTTGC 658
Query 880 CATAAATGCCCGTCCTACAACGACTAGAATGATCTCCCGTGCCCTTCCTCAGGGATTATC 939
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 659 TATAAATGCCCGTCCTACAACAACTAGAATGATCTCCCGTGCTCTTCCTCAGGGATTGTC 718
Query 940 GAGGGCCTTTGTTGGCAGGATGTTGGCGGATCCTGCATTTCTCTATAAACTTCTTTTGGA 999
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 719 GAGGGCCTTTGTTGGCAGGATGTTGGCGGATCCTGCATTTCTGTATAAACTTCTTTTGGA 778
Query 1000 GCAAGCTGCCACGGTTGGATGCTCAGTTTGGTGGGAGGTGAAGAATCGTAAGAATAGACT 1059
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 779 GCAAGCTGCCACGGTTGGATGCTCGGTTTGGTGGGAGGTGAAGAATCGTAAGAATAGACT 838
Query 1060 AAAAGAGGAATGGGATCTTGCACTTATAAATGTTCTTACTGTATCAGCATGCAATGCAGC 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AAAAGAGGAATGGGATCTTGCACTTATAAATGTTCTTACTGTATCAGCATGCAATGCAGC 898
Query 1120 TGCTGTTTGGTTACTAGCTCCATGTCGTTCCTATGGAAACACATTCCGGTTTGACCTGCA 1179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGCTGTTTGGTTGCTAGCTCCATGTCGTTCCTATGGAAACACATTCCGGTTTGACCTGCA 958
Query 1180 AAATACATTACAAAAGCTACCAAATAATTTATTTGAAATGAGCTATCCTCTTAGAGAGTT 1239
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAATACACTACAAAAGTTACCAAATAATTTATTTGAAATGAGCTATCCTCTTAGAGAGTT 1018
Query 1240 CGACTTGCAAAAGAGATTTCATTCTCTTTTCTACAAGGCTGCAGAGTTGTCCATTCTTGG 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CGACTTGCAAAAGAGATTTCATTCTCTTTTCTACAAGGCTGCAGAGTTGTCCATTCTTGG 1078
Query 1300 ACTCGCAGCAGGAACACTCCAGGGTTCGTTGTCAAACGTTCTAGCAGGAAAGAAGAAGAA 1359
||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1079 ACTCGCAGCAGGAACTCTCCAGGGTTCGTTGTCAAACTTTCTGGCAGGAAAGAAGAAGAA 1138
Query 1360 CAGAGTATCTGTGACGGTCCCATCTATCAGCACAAATGCTCTTGGTTATGGTGCATTTCT 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CAGAGTATCTGTGACGGTCCCATCTATCAGCACAAATGCTCTTGGTTATGGTGCATTTCT 1198
Query 1420 TGGAATATATGCCAACTTGAGATATCAGCTGTTATGTGGATTTGAAAGAGGAGTGAGCAG 1479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGGAATATATGCGAACTTGAGATATCAGCTGTTATGTGGATTTGAAAGAGGAGTGAGCAG 1258
Query 1480 TCACTTTGACGTCATAGGAGTAGCACTCTTCTTCGGCACTGCCTTGAGGATTATGAATGT 1539
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCACTTTGATGTCATAGGAGTTGCACTCTTCTTCGGCACTGCCTTGAGGATTATGAATGT 1318
Query 1540 GCAATTAGGGGAAAAGTCAAGACAAGTATGGCTAGGTGTAGAGGCAGACCCACTGGCGCA 1599
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1319 TCAATTAGGGGAAAAGTCAAGACAGGTATGGCTAGGTGTGGAGGCAGACCCACTGGCGCA 1378
Query 1600 GTCAGATGATCTGCTGGCAAAAGCATACAACCGACCCTCAGAGGAAGCAGTAGCAAAGCC 1659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1379 GTCAGATGATCTGCTGGCAAAAGCATACAACCGACCCTCAGAGGAAGCAGTAGCAAAACC 1438
Query 1660 ATCTTCAAAATGGTTCATCTCAAAGAATGCAATTGTCTCAGGGCTACTCGGGAAGAAGCA 1719
|||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1439 ATCTTCAAGATGGTTCATCTCAAAGAATGCAATTGTCTCAGGGCTGCTTGGGAAGAAGCA 1498
Query 1720 AGAAGATTCAGTTTCAGATTCTCCACCTCCAAAGGCTCGGCGAAAAAGGATAGTGAGGAA 1779
||| || |||||||||||| ||||||||||||||||| | ||||||||||| ||||||||
Sbjct 1499 AGAGGACTCAGTTTCAGATCCTCCACCTCCAAAGGCTAGACGAAAAAGGATTGTGAGGAA 1558
Query 1780 GAAGGTGGCTGCATCTGCCTCTTAAATAACCAACAAAACCTCTAA 1824
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GAAGGTGGCTGCATCTGCCTCTTAAATAACCAACAAAACCTCTAA 1603
> Ahg489330 jgi|Araly1|489330|fgenesh2_kg.6__2464__AT5G24680.1
Length=1337
Score = 73.1 bits (39), Expect = 8e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 2086 TTTCTCAATGTTTCTAATAAATAGCCACATCTTATACGTTCGTTG 2130
|||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1337 TTTCTCAATGTTTCTAATAAATAGCCACATCTTATATGTTTGTTG 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80141875480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5