BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24760.1 Length=1550 Score E Sequences producing significant alignments: (Bits) Value Ahg489336 jgi|Araly1|489336|fgenesh2_kg.6__2470__AT5G24760.1 2032 0.0 > Ahg489336 jgi|Araly1|489336|fgenesh2_kg.6__2470__AT5G24760.1 Length=1405 Score = 2032 bits (1100), Expect = 0.0 Identities = 1307/1400 (93%), Gaps = 41/1400 (3%) Strand=Plus/Plus Query 15 TTCGGTGTTAGGTGAAGAACCTCTGTTTCTTCCTCTTCTTCTTCAGGGTCGGTGTTAGGT 74 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 2 TTCGGTGTTAGGTGAAGAACCTCTG----TT--TCTTCTTCTTCAGGGTCGGTGTTAGGT 55 Query 75 GATGAAGCTCcgttttttcgttttcgtcttcttcttcttcaaggtctcttcgttttGTGC 134 || |||||| | | |||| |||| ||||||||||| |||| ||||| |||||| | Sbjct 56 GAAGAAGCT-C--TGTTTC---TTCG---TCTTCTTCTTC-AGGTTTCTTCATTTTGTTC 105 Query 135 TTGAAGTAAGAAAATTTGGGAGAACAATGTCGGCTTCTTCTTC--C-TCCTTTGAACAAC 191 |||||| |||||||||||||| ||| |||||| |||||||||| | ||||| ||||||| Sbjct 106 TTGAAGCAAGAAAATTTGGGATAACTATGTCGTCTTCTTCTTCTTCTTCCTTGGAACAAC 165 Query 192 CTCAAGTCATAACCTGCAACGCGGCGGTGGCATGGCGTGCTGGTGAGCCATTGGTTATGG 251 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 166 CTCAAGTCATAACCTGCAAAGCGGCGGTGGCATGGCGTGCTGGTGAGCCATTGGTTATGG 225 Query 252 AGGAAGTTGAAGTGAGTCCACCTCAACCACTTGAGATCAGAATTAAAGTTGTATGTACAT 311 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 226 AGGAAGTTGAAGTGAGTCCACCTCAACCTCTTGAGATCAGAATTAAAGTTGTATGTACAT 285 Query 312 CTCTCTGTCGTAGTGATCTCTCTGCTTGGGAATCTCAGTCTCTTTTGCCTCGAATATTTG 371 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 286 CTCTCTGTCGTAGTGATCTTTCTGCTTGGGAATCTCAGTCTCTTTTGCCTCGAATATTTG 345 Query 372 GCCATGAAGCTGCAGGTATAGTGGAGAGCATTGGAGAAGGTGTAACTGAGTTTGAAAAAG 431 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 346 GCCATGAAGCTGCAGGTATAGTAGAGAGCATTGGAGAAGGTGTAACCGAGTTTGAAAAAG 405 Query 432 GAGATCATGTGCTTGCTGTATTCACTGGAGAATGTGGGTCATGTCGGCATTGCATATCTG 491 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 406 GAGATCATGTGCTCGCTGTATTCACTGGAGAATGTGGGTCATGTCGGCATTGCATCTCTG 465 Query 492 GGAAAAGTAACATGTGTCAGGTTCTTGGAATGGAGAGGAAAGGTTTGATGCATAGTGATC 551 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 GGAAAAGTAATATGTGTCAGGTTCTTGGAATGGAGAGGAAAGGTTTGATGCATAGTGATC 525 Query 552 AGAAGACACGCTTCTCCATCAAAGGCAAACCTGTTTACCATTACTGCGCGGTTTCAAGTT 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 AGAAGACACGCTTCTCCATCAAAGGCAAACCTGTTTACCATTACTGCGCGGTTTCAAGTT 585 Query 612 TCAGCGAGTACACTGTGGTTCACTCTGGCTGTGCTGTCAAAGTCGATCCACTGGCACCTC 671 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 586 TCAGCGAGTACACTGTGGTTCACTCTGGCTGTGCTGTCAAAGTCGATCCTGTGGCACCTC 645 Query 672 TGCATAAAATTTGTCTTCTAAGCTGTGGAGTAGCTGCAGGTCTTGGTGCAGCATGGAATG 731 |||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 646 TGCACAAAATTTGTCTGCTAAGCTGTGGAGTAGCTGCAGGTCTTGGTGCAGCGTGGAATG 705 Query 732 TTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTT 791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 TTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTT 765 Query 792 CTGTTGCTCAAGGTGCCAAACTTAGAGGAGCAGCTCAAATACTTGGGGTTGATATAAATC 851 | |||||||||||||||||||| ||||||||| |||||||| |||| ||||||||||||| Sbjct 766 CGGTTGCTCAAGGTGCCAAACTCAGAGGAGCAACTCAAATAATTGGAGTTGATATAAATC 825 Query 852 CCGCTAAGGCTGAACAAGCAAAGACATTTGGTGTCACGGATTTCATCAATTCAAATGACC 911 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 826 CAGCTAAGGCTGAACAAGCAAAGACATTTGGCGTCACGGATTTCATCAATTCAAATGACC 885 Query 912 TCTCTGAACCTATACCCCAGGTGATCAAAAGAATGACAGGAGGAGGTGCAGATTTCTCAT 971 |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 886 TCTCTGAACCTACACCTCAGGTGATCAAAAGAATGACAGGAGGAGGTGCGGATTTCTCAT 945 Query 972 TTGAATGTGTTGGTGATACAGGAATAGCTACAACTGCTTTACAATCGTGCTCGGATGGAT 1031 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 946 TTGAATGTGTCGGTGATACAGGAATAGCTACAACTGCTTTACAATCGTGCTCAGATGGAT 1005 Query 1032 GGGGAATGACGGTTACTCTAGGTGTACCGAAAGCT-AAGCCTGAAGTTTCAGCTCATTAC 1090 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 1006 GGGGAATGACGGTTACTCTAGGTGTACCGAAAG-TGAAGCCTGAAGTTTCAGCTCATTAC 1064 Query 1091 GGACTTTTCCTTTCTGGGAAATCTTTAAAAGGGACTCTTTTTGGTGGTTGGAAGCCTAAA 1150 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 1065 GGACTTTTCCTTTCTGGAAAATCTTTAAAAGGGACTCTTTTTGGTGGTTGGAAGCCCAAA 1124 Query 1151 TCTGATCTTCCTTCACTCATTGACAAGTACATGAACAAGGAGATTATGATCGATGAATTT 1210 |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1125 TCTGATATTCCTTCACTCATTGAAAAGTACATGAACAAGGAGATTATGATCGATGAATTC 1184 Query 1211 ATTACGCATAACCTGTCATTTGATGAAATCAACAAAGCTTTTGTTCTTATGAGAGAAGGA 1270 | |||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 1185 GTAACGCATAACCTGGCATTTGATGAAATCAACAAAGCTTTTGATCTTATGAGAGATGGA 1244 Query 1271 AAATGTTTGCGTTGTGTTCTTCACATGCCAAAGTAATGTCTCGGAAAACACATGTCACAG 1330 || ||| |||||||||||||||||||||||||||||||||| |||||| | || | | | Sbjct 1245 AAGTGTCTGCGTTGTGTTCTTCACATGCCAAAGTAATGTCTTGGAAAAAAGAT-T-A-A- 1300 Query 1331 ATTCAAGAAAGATTAACGAGAGCTCTGTATATTCTACAGCTGAGTTGTTGTATAAAACAA 1390 ||||| ||| | | ||| |||||||||||||||||||||||||||||| Sbjct 1301 ---CAAGA--GAT----G-----T--GTACATTCTACAGCTGAGTTGTTGTATAAAACAA 1344 Query 1391 AAGTGATGGTTTTCTATAGA 1410 ||||||||||||||| |||| Sbjct 1345 AAGTGATGGTTTTCTCTAGA 1364 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58049533380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5