BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24760.1
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489336 jgi|Araly1|489336|fgenesh2_kg.6__2470__AT5G24760.1 2032 0.0
> Ahg489336 jgi|Araly1|489336|fgenesh2_kg.6__2470__AT5G24760.1
Length=1405
Score = 2032 bits (1100), Expect = 0.0
Identities = 1307/1400 (93%), Gaps = 41/1400 (3%)
Strand=Plus/Plus
Query 15 TTCGGTGTTAGGTGAAGAACCTCTGTTTCTTCCTCTTCTTCTTCAGGGTCGGTGTTAGGT 74
||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 2 TTCGGTGTTAGGTGAAGAACCTCTG----TT--TCTTCTTCTTCAGGGTCGGTGTTAGGT 55
Query 75 GATGAAGCTCcgttttttcgttttcgtcttcttcttcttcaaggtctcttcgttttGTGC 134
|| |||||| | | |||| |||| ||||||||||| |||| ||||| |||||| |
Sbjct 56 GAAGAAGCT-C--TGTTTC---TTCG---TCTTCTTCTTC-AGGTTTCTTCATTTTGTTC 105
Query 135 TTGAAGTAAGAAAATTTGGGAGAACAATGTCGGCTTCTTCTTC--C-TCCTTTGAACAAC 191
|||||| |||||||||||||| ||| |||||| |||||||||| | ||||| |||||||
Sbjct 106 TTGAAGCAAGAAAATTTGGGATAACTATGTCGTCTTCTTCTTCTTCTTCCTTGGAACAAC 165
Query 192 CTCAAGTCATAACCTGCAACGCGGCGGTGGCATGGCGTGCTGGTGAGCCATTGGTTATGG 251
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CTCAAGTCATAACCTGCAAAGCGGCGGTGGCATGGCGTGCTGGTGAGCCATTGGTTATGG 225
Query 252 AGGAAGTTGAAGTGAGTCCACCTCAACCACTTGAGATCAGAATTAAAGTTGTATGTACAT 311
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 226 AGGAAGTTGAAGTGAGTCCACCTCAACCTCTTGAGATCAGAATTAAAGTTGTATGTACAT 285
Query 312 CTCTCTGTCGTAGTGATCTCTCTGCTTGGGAATCTCAGTCTCTTTTGCCTCGAATATTTG 371
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 286 CTCTCTGTCGTAGTGATCTTTCTGCTTGGGAATCTCAGTCTCTTTTGCCTCGAATATTTG 345
Query 372 GCCATGAAGCTGCAGGTATAGTGGAGAGCATTGGAGAAGGTGTAACTGAGTTTGAAAAAG 431
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 346 GCCATGAAGCTGCAGGTATAGTAGAGAGCATTGGAGAAGGTGTAACCGAGTTTGAAAAAG 405
Query 432 GAGATCATGTGCTTGCTGTATTCACTGGAGAATGTGGGTCATGTCGGCATTGCATATCTG 491
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 406 GAGATCATGTGCTCGCTGTATTCACTGGAGAATGTGGGTCATGTCGGCATTGCATCTCTG 465
Query 492 GGAAAAGTAACATGTGTCAGGTTCTTGGAATGGAGAGGAAAGGTTTGATGCATAGTGATC 551
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 GGAAAAGTAATATGTGTCAGGTTCTTGGAATGGAGAGGAAAGGTTTGATGCATAGTGATC 525
Query 552 AGAAGACACGCTTCTCCATCAAAGGCAAACCTGTTTACCATTACTGCGCGGTTTCAAGTT 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 AGAAGACACGCTTCTCCATCAAAGGCAAACCTGTTTACCATTACTGCGCGGTTTCAAGTT 585
Query 612 TCAGCGAGTACACTGTGGTTCACTCTGGCTGTGCTGTCAAAGTCGATCCACTGGCACCTC 671
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 586 TCAGCGAGTACACTGTGGTTCACTCTGGCTGTGCTGTCAAAGTCGATCCTGTGGCACCTC 645
Query 672 TGCATAAAATTTGTCTTCTAAGCTGTGGAGTAGCTGCAGGTCTTGGTGCAGCATGGAATG 731
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 646 TGCACAAAATTTGTCTGCTAAGCTGTGGAGTAGCTGCAGGTCTTGGTGCAGCGTGGAATG 705
Query 732 TTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTT 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTT 765
Query 792 CTGTTGCTCAAGGTGCCAAACTTAGAGGAGCAGCTCAAATACTTGGGGTTGATATAAATC 851
| |||||||||||||||||||| ||||||||| |||||||| |||| |||||||||||||
Sbjct 766 CGGTTGCTCAAGGTGCCAAACTCAGAGGAGCAACTCAAATAATTGGAGTTGATATAAATC 825
Query 852 CCGCTAAGGCTGAACAAGCAAAGACATTTGGTGTCACGGATTTCATCAATTCAAATGACC 911
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 826 CAGCTAAGGCTGAACAAGCAAAGACATTTGGCGTCACGGATTTCATCAATTCAAATGACC 885
Query 912 TCTCTGAACCTATACCCCAGGTGATCAAAAGAATGACAGGAGGAGGTGCAGATTTCTCAT 971
|||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 886 TCTCTGAACCTACACCTCAGGTGATCAAAAGAATGACAGGAGGAGGTGCGGATTTCTCAT 945
Query 972 TTGAATGTGTTGGTGATACAGGAATAGCTACAACTGCTTTACAATCGTGCTCGGATGGAT 1031
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 946 TTGAATGTGTCGGTGATACAGGAATAGCTACAACTGCTTTACAATCGTGCTCAGATGGAT 1005
Query 1032 GGGGAATGACGGTTACTCTAGGTGTACCGAAAGCT-AAGCCTGAAGTTTCAGCTCATTAC 1090
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1006 GGGGAATGACGGTTACTCTAGGTGTACCGAAAG-TGAAGCCTGAAGTTTCAGCTCATTAC 1064
Query 1091 GGACTTTTCCTTTCTGGGAAATCTTTAAAAGGGACTCTTTTTGGTGGTTGGAAGCCTAAA 1150
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1065 GGACTTTTCCTTTCTGGAAAATCTTTAAAAGGGACTCTTTTTGGTGGTTGGAAGCCCAAA 1124
Query 1151 TCTGATCTTCCTTCACTCATTGACAAGTACATGAACAAGGAGATTATGATCGATGAATTT 1210
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1125 TCTGATATTCCTTCACTCATTGAAAAGTACATGAACAAGGAGATTATGATCGATGAATTC 1184
Query 1211 ATTACGCATAACCTGTCATTTGATGAAATCAACAAAGCTTTTGTTCTTATGAGAGAAGGA 1270
| |||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1185 GTAACGCATAACCTGGCATTTGATGAAATCAACAAAGCTTTTGATCTTATGAGAGATGGA 1244
Query 1271 AAATGTTTGCGTTGTGTTCTTCACATGCCAAAGTAATGTCTCGGAAAACACATGTCACAG 1330
|| ||| |||||||||||||||||||||||||||||||||| |||||| | || | | |
Sbjct 1245 AAGTGTCTGCGTTGTGTTCTTCACATGCCAAAGTAATGTCTTGGAAAAAAGAT-T-A-A- 1300
Query 1331 ATTCAAGAAAGATTAACGAGAGCTCTGTATATTCTACAGCTGAGTTGTTGTATAAAACAA 1390
||||| ||| | | ||| ||||||||||||||||||||||||||||||
Sbjct 1301 ---CAAGA--GAT----G-----T--GTACATTCTACAGCTGAGTTGTTGTATAAAACAA 1344
Query 1391 AAGTGATGGTTTTCTATAGA 1410
||||||||||||||| ||||
Sbjct 1345 AAGTGATGGTTTTCTCTAGA 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58049533380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5