BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24770.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489339 jgi|Araly1|489339|fgenesh2_kg.6__2473__AT5G24770.1 1463 0.0
> Ahg489339 jgi|Araly1|489339|fgenesh2_kg.6__2473__AT5G24770.1
Length=1391
Score = 1463 bits (792), Expect = 0.0
Identities = 975/1060 (92%), Gaps = 25/1060 (2%)
Strand=Plus/Plus
Query 137 TTAAGCACACAATCTCAACGTGCACTAAAAACGAGTGG-----TGTAAGTGAAAAATATC 191
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1 TTAAGCACACAGTCTCAACGTGCTCTAAAAACGAGTGGTTCTATGTAAGTGAAAAATATC 60
Query 192 GTCGATTATAAACATTATGGGACCAGTAGCATTTGTTGCACCAATCGAAAACAGACA-AG 250
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 61 GTCGATTATAAACATTATCGGACCAGTAGCATTTGTTGCACCAATCGAAAACACACACA- 119
Query 251 CACACATATCTCCTCATTTCTCATCTGGCTTC-T---TAATCATTTCTCATAACCCCACC 306
| || ||| ||||||||| |||||| | || | ||| || | || | ||||||||
Sbjct 120 TATACTTATAGCCTCATTTCCCATCTGTCGTCATAAGTAACCA-TACT--T-ACCCCACC 175
Query 307 TCATTATAAATACCACCCTTTGCGTCACACATATAAACATCACAAACTAAACAATAAACC 366
|||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||
Sbjct 176 TCATTATAAATACCACCCTTTGTGTCACACAAATAAGCATCACAAACTAAACAATAAACC 235
Query 367 ----ATACCATAAAAAACATGAAAATCCTCTCACTTTCACTTCTCTTGCTCTTGGCCGCT 422
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 ATATATACCACAAAAAACATGAAAATCCTCTCACTTTCACTTCTCTTGCTCTTGGCCGCT 295
Query 423 ACGGTCTCGGCATCCGTTCCAGGGCTCATCGAACTCGTCGATTCGAAAACCATCTTTGGG 482
|||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||
Sbjct 296 ACGGTCTCGGCATCCGTTCCAGAGCTCATCGAACTCGTCGAATCGAACACCATCTTTGGG 355
Query 483 AACGTAGCCGAACTCTTAGAGAAAGAGAAACTTTCCATCAACTACGC-CAACTGCAGAAG 541
|||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 356 AACGAAGCCGAACTCTTAGAGAAAGAGAAACTTACCATCAACTAC-CACAACTGCAGAAG 414
Query 542 CTGGCACCTTGGTGTTGAGACCTCTAACATCATAGACTTCGACACGGTGCCCGCAAATTG 601
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 415 CTGGCACCTTGGTGTTGAGACCTCTAACATCATAGACTTCGACACCGTGCCCGCAAATTG 474
Query 602 CAAAGACTATGTTGAAGACTACTTGATCACTTCCAAACAGTACCAATAC-GACTCCAAAA 660
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 475 CAAAGACTATGTTGAAGACTACTTGATCACTTCCAAACAGTACCAAT-CTGACTCCAAAA 533
Query 661 CCGTGTGCAAAGAGGCTTATTTCTATGCCAAAGGACTTGCCCTAAAGAACGACACCGTCA 720
| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 534 CGGTGTGCAAAGAGGCTTATTTCTACGCCAAAGGACTTGCCCTAAAGAACGATACCGTCA 593
Query 721 ATGTTTGGATCTTTGACCTAGATGATACCCTCCTCTCTAGTATTCCCTACTACGCAAAAT 780
|||||||||||||||||||||| || || |||||||||||||| ||||||||||| ||||
Sbjct 594 ATGTTTGGATCTTTGACCTAGACGACACTCTCCTCTCTAGTATCCCCTACTACGCCAAAT 653
Query 781 ATGGATACGGAACAGAGAAGACCGACCCGGGGGCGTACTGGTTGTGGTTAGGGACCGGAG 840
|||||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||
Sbjct 654 ATGGATACGGGACACAGAAGACCGACCCGGGAGCATACTGGTTGTGGTTAGGGACCGGAG 713
Query 841 CATCAAC-CCCTGGACTCCCGGAGGCCTTGCATCTTTACCAAAACATCATAGAGCTCGGG 899
||||||| ||| || || |||||| | |||| ||| ||||||||| || |||| ||||||
Sbjct 714 CATCAACTCCCGGG-CTTCCGGAGACTTTGCTTCTATACCAAAACCTCTTAGAACTCGGG 772
Query 900 ATTGAACCCATCATACTCAGTGACCGTTGGAAGTTGTGGAAGAATGTCACTCTCGACAAT 959
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 773 ATTGAACCCATCATACTCAGTGACCGTTGGAAATTGTGGAAGAATGTCACTCTCGAGAAT 832
Query 960 CTCGAAGCTGCTGGCGTGACCTACTGGAAGCATCTCATATTGAAGCCTAATGGTTCGAAC 1019
|| || |||||||| |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 833 CTTGAGGCTGCTGGTGTGACCTACTGGAAGCATCTCATATTAAAGCCAAACGGTTCGAAA 892
Query 1020 TTGAGGCAAGTGGTGTACAAGTCAAAGGTGAGGAAGAGTCTCGTGAAGAAAGGATACAAC 1079
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 893 TTGAGGCAAGTGGTGTACAAGTCAAAGGTGAGGAAGAGCCTGGTGAAGAAAGGATACAAC 952
Query 1080 ATCGTTGGCAATATCGGAGATCAATGGGCTGATTTGGTTGAGGATACCCCTGGGAGGGTT 1139
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 953 ATCGTTGGCAATATTGGAGACCAATGGGCTGATTTGGTTGAGGATACTCCTGGAAGGGTT 1012
Query 1140 TTTAAGCTCCCAAATCCACTCTACTACGTACCTTCTTAAG 1179
||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TTTAAGCTCCCAAATCCACTCTACTACGTACCTTCTTAAG 1052
Score = 510 bits (276), Expect = 9e-144
Identities = 321/343 (94%), Gaps = 2/343 (1%)
Strand=Plus/Plus
Query 1027 AAGTGGTGTACAAGTCAAAGGTGAGGAAGAGTCTCGTGAAGAAAGGATACAACATCGTTG 1086
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1050 AAGTGGTGTACAAGTCAAAGGTGAGGAAGAGCCTGGTGAAGAAAGGATACAACATCGTTG 1109
Query 1087 GCAATATCGGAGATCAATGGGCTGATTTGGTTGAGGATACCCCTGGGAGGGTTTTTAAGC 1146
| ||||| ||||| |||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1110 GGAATATTGGAGACCAATGGGCTGATTTGGTTGAGGATACTCCTGGAAGGGTCTTTAAGC 1169
Query 1147 TCCCAAATCCACTCTACTACGTACCTTCTTAAGAATCTATCTTCATCGCATTGTCCCCTT 1206
||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||
Sbjct 1170 TCCCAAATCCACTCTACTACGTACCTTCTTAAGTATCTATGTTCATGGCTTTGTCCCCTT 1229
Query 1207 GTATACACTTCATATCTATGTCGTTT-CGTTTATCTTTGTAGCCGTTTTGGCACCGCTGC 1265
|||| |||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||
Sbjct 1230 GTATCCACTCCATATCTATGTC-TTTCCGTTTATCTTTATAGCCGTTTTGGCACCGCTGC 1288
Query 1266 ATAAATAAAATGTCTATCCTATCGTAACTTAATAAGTACAAAGACTTCGTACTAAATGTT 1325
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1289 ATAAATAAAATGTCTATCCTATCGTAACTTAATAAGAACAAAGACTTCGTACTAAATGTT 1348
Query 1326 GTTTTTCTTTAAAGGGGTCATTAATTAAGTGGCCATGAAATGA 1368
||||||||||| |||| | |||||| |||||||||||||||||
Sbjct 1349 GTTTTTCTTTATAGGGATAATTAATCAAGTGGCCATGAAATGA 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5