BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24775.1
Length=3116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916100 jgi|Araly1|916100|Al_scaffold_0008_851 339 1e-91
Ahg912046 jgi|Araly1|912046|Al_scaffold_0001_2300 278 2e-73
Ahg937716 jgi|Araly1|937716|scaffold_501907.1 195 2e-48
> Ahg916100 jgi|Araly1|916100|Al_scaffold_0008_851
Length=645
Score = 339 bits (183), Expect = 1e-91
Identities = 265/304 (87%), Gaps = 7/304 (2%)
Strand=Plus/Plus
Query 2248 CATGAATTCAATAGGGATCA-TGTCCTCACACCCAC-TGTCCGTATCGCGTTTAACAAGT 2305
|||||||||||| ||||| | ||||| | ||||| | | ||||| |||||||| |||| |
Sbjct 88 CATGAATTCAATTGGGAT-ATTGTCCACGCACCC-CTTATCCGTGTCGCGTTTCACAATT 145
Query 2306 ATGCTGCATCAAAATTTGCAGACCACATGAACATTTGGAAGGGAAAGTGGGCAGCAGGCA 2365
||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 146 ATGCTTCATCAAAATTTGGAGACCACATGAACATTTGGAAGGGAAAGTGGGTGGCAGGCA 205
Query 2366 AGGAGTGTCCAAGAGGCTTGAACCCAGACATATGGCCTCGC-TATAAAGAGTATTGGGCG 2424
|||||||||||| ||| ||||||||||||||||||| | || || ||||||||||||| |
Sbjct 206 AGGAGTGTCCAAAAGGGTTGAACCCAGACATATGGCTTGGCTTA-AAAGAGTATTGGGTG 264
Query 2425 TTGCCGGAGACTGCTCGTACCGCGGAAACCAAC-TCATAAAACCAGAAAAGAGAGCGTGG 2483
||| |||| |||||||||| || |||||||||| | |||||||||| || | || ||
Sbjct 265 TTGTCGGATACTGCTCGTATCGTGGAAACCAACAAAAAAAAACCAGAAGAGCCAACGAGG 324
Query 2484 TGGCAAAGGTGTGGCGGTGCACAATGCGGGTTCGACGAGCTTCTTAAGTCGTACAGACGA 2543
|||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 325 TGGCAAAGGTATGGCGGTGCACAATGCGGGTTCGACGAGCTTCTTAAGTCGTGTATACGA 384
Query 2544 ATTG 2547
||||
Sbjct 385 ATTG 388
> Ahg912046 jgi|Araly1|912046|Al_scaffold_0001_2300
Length=267
Score = 278 bits (150), Expect = 2e-73
Identities = 198/222 (89%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 2619 ACGGAGAAGAACGGAGGTGTGAAACCTGATTTTGTAGAAATCATTGAGGATACACACACC 2678
|||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ACGGAGAAAAACGGAGGTGTGGAACCTGATTTTGTAGAAGTCATTGAGGATACACACACC 60
Query 2679 AACAAGAAAACTGGATTAATTCAAGACGGTTACATCGCGGGTCTTGTTGAGACATTGAAG 2738
||||||||||| ||| ||||||||| ||||||||||| || || |||||||| ||||||
Sbjct 61 AACAAGAAAACAGGAAAAATTCAAGATGGTTACATCGCAGGCCTCGTTGAGACGTTGAAG 120
Query 2739 AGAAGGAAGACGGAGTGCCTCACACAGCTTCCCCAAAATGATGATGGATCCTCACCATCC 2798
| ||||||||||||||||||||| |||||| | |||||||||||||| |||||| |||||
Sbjct 121 AAAAGGAAGACGGAGTGCCTCACGCAGCTTTCTCAAAATGATGATGGTTCCTCATCATCC 180
Query 2799 AACGTCCAGGCCCGAGAAAAAATTAACCGCATGGTTCTTGAG 2840
|| ||| | ||||||||| || ||||||||||||||||||
Sbjct 181 AATGTCTTTGTCCGAGAAAAGATCAACCGCATGGTTCTTGAG 222
> Ahg937716 jgi|Araly1|937716|scaffold_501907.1
Length=268
Score = 195 bits (105), Expect = 2e-48
Identities = 111/114 (97%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 182 GAGTTCTTCATGTATCTCAAGTTTGGATGCACTTATATGGGGAAGGGTTTATGTCGGGGT 241
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 155 GAGTTATTCATGTATCTCAAGTTTGGATGCACTTATATGGGGAAGGGTTTATGCCGGGGT 214
Query 242 ACAAAGTTTGGTTCATGCATGGAGAGAATGAGTCAATGGTGAATTATGGTAGTT 295
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 215 ACAAAGTTTGGTTTATGCATGGAGAGAATGAGTCAATGGTGAATTATGGTAGTT 268
Score = 167 bits (90), Expect = 5e-40
Identities = 122/137 (89%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCAAATCCGTTTAATTATTTTCGATCATGGATGGACCAGCCCATGCGTGAT 60
||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 21 ATGTCTTCTTCGAATCCGTTTAATTATTTTCGTTCATGGATGGACCAGCCCATGCGTGAT 80
Query 61 CC-GCTAACGGAGTTACTAATGCCGGAATATGCAGAAGGTCTTAAACAATTCATGGCATT 119
|| | | ||||||||||| | ||| || |||||| |||||||||||||||||||||||||
Sbjct 81 CCCG-TGACGGAGTTACTTACGCCAGAGTATGCACAAGGTCTTAAACAATTCATGGCATT 139
Query 120 CGC-GACAAATCAACCG 135
|| | |||| ||||||
Sbjct 140 TGCAG-CAAACCAACCG 155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117698857050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5