BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24790.1
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351499 jgi|Araly1|351499|fgenesh1_pg.C_scaffold_6002092 1131 0.0
Ahg491609 jgi|Araly1|491609|fgenesh2_kg.7__1042__AT4G31330.1 158 8e-38
> Ahg351499 jgi|Araly1|351499|fgenesh1_pg.C_scaffold_6002092
Length=744
Score = 1131 bits (612), Expect = 0.0
Identities = 698/740 (94%), Gaps = 4/740 (1%)
Strand=Plus/Plus
Query 35 ATGGAGTGGAAGAAATGGTACTTAGACGCGATTCTTGTGCCCTTAGCTCTTATGATGATG 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTGGAAGAAATGGTACTTAGACGCGATTCTTGTGCCCTTAGCTCTTATGATGATG 60
Query 95 ATTTGTTACCACATCTACTTGTCCTTCATGGTCCGAACCAATCCCTTCTCCACCCTCCTC 154
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 ATTTGCTACCACATCTACTTGTCCTTCATGGTTCGAACCAATCCCTTCTCCACCCTCCTC 120
Query 155 GGCATTAACTCTCACGGCCGCCGGATTTGGATTTCTGCTATGATCAAGGACAATCAGAAG 214
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 121 GGCATTAACTCTCACGGCCGCCGGATGTGGATTTCTGCTATGATCAAGGAGAATCAGAAG 180
Query 215 ACGAACATATTGGCGGTACAAACACTGCGTAACATAGTAATGGGAGCTACACTGATGGCC 274
||||| |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 181 ACGAATATATTGGCCGTACAAACACTGCGTAACATAATAATGGGAGCTACACTAATGGCC 240
Query 275 ACGACCTGCGTGCTTCTCTGCGCGGGTCTAGCCGCAGTGTTAAGCAGCACTTACAGCATC 334
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACGACCTGTGTACTTCTCTGCGCGGGTCTAGCCGCAGTGTTAAGCAGCACTTACAGCATC 300
Query 335 AAGAAGCCTCTAAACGACGCCGTTTTTGGTGCTCATGGAGATTTCGCCATATCCATCAAA 394
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 301 AAGAAGCCTCTAAACGACGCCGTTTTTGGCGCTCATGGAGATTTTGCCATATCCATCAAA 360
Query 395 TACCTAACAATTCTCACAATTTTCATCTTCTCCTTTTTCTTCCACTCCCTCTCCATCCGT 454
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 361 TACCTAACAATTCTCACAATCTTCATCTTCTCCTTCTTCTTCCACTCCCTATCCATCCGT 420
Query 455 TTCCTAAACCAAGTCGCCATTCTCGTAAACATCCCTAACTTAGACCCTAATCCTTCTGGT 514
|||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct 421 TTCCTAAACCAAGTCGCCATTCTCGTTAACATCCCTAATTTAGACCCTACTCCTTCTGGT 480
Query 515 TGCGTCTTCCTCACGTCTGAGCACGTCAGCGAGATGTTCGAAAAGGGTATCTTTCTTAAC 574
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 481 TGCTTCTTCCTCACGTCTGAGCACGTAAGCGAGATGTTCGAAAAGGGTATCTTTCTCAAC 540
Query 575 ACGGTAGGTAACAGGTTGTTCTACGCAGGCTTTTCTCTAATGTTATGGATCTTTGGTCCC 634
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 541 ACGGTAGGTAACAGGTTGTTCTACGCTGGCTTTTCTCTAATGCTATGGATCTTTGGTCCC 600
Query 635 ATCCTCGTGTTCTTTAGCGTTTTGGTGATGGTTCTTGTTCTTTCTCACCTCGATTTCGTG 694
||||||||||||| | |||||||||||||||||||||||||| | ||||||||||||||
Sbjct 601 ATCCTCGTGTTCTCGACCGTTTTGGTGATGGTTCTTGTTCTTTATAACCTCGATTTCGTG 660
Query 695 TCACGCAACAACAATAAAGAAAAACTACGTATAGTGGATATAC-GTCGTTCCTCTGATTT 753
|||||||||||||||||||| |||| |||||| |||||| | | |||| | |||||| |
Sbjct 661 TCACGCAACAACAATAAAGAGAAACCACGTATTGTGGAT-TGCCGTCGCGCTTCTGATCT 719
Query 754 -TACGAATGGTGGTGAAGAC 772
| ||||||||| ||| |||
Sbjct 720 CT-CGAATGGTGATGACGAC 738
> Ahg491609 jgi|Araly1|491609|fgenesh2_kg.7__1042__AT4G31330.1
Length=944
Score = 158 bits (85), Expect = 8e-38
Identities = 231/300 (77%), Gaps = 15/300 (5%)
Strand=Plus/Plus
Query 197 ATCAAGGACAATC-AGAAGACGAACATATTGGCGGTACAAACACTGCGTAACATAG--TA 253
||||||||||| | |||||| |||||| ||||| || || || || | ||| | | ||
Sbjct 167 ATCAAGGACAA-CGAGAAGAAGAACATCTTGGCCGTTCAGACGCTTAGAAAC-T-GCATA 223
Query 254 ATGGGAG-CTACACTGATGGCCACGACCTGCG-TGCTTCTCTGCGCGGGTCTAGCCGCAG 311
||||| | | || | ||||| || || | || | || ||||||||||||||||| || |
Sbjct 224 ATGGG-GTCGACTTTAATGGCAACAACAT-CGATCCTACTCTGCGCGGGTCTAGCTGCGG 281
Query 312 TGTTAAGCAGCACTTACAGCA-TCAAGAAGCCTCTAAACGACGCCGTTTTTGGTGCTCAT 370
| ||||||||||| || ||| | ||||||||||||||||||||||||||||| ||||
Sbjct 282 TTTTAAGCAGCACATA-TGCAGTAAAGAAGCCTCTAAACGACGCCGTTTTTGGAGCTCGC 340
Query 371 GGAGATTTCGCCATATC-CATCAAATACCTAACAATTCTCACAATTTTCATCTTCTCCTT 429
||||| ||| | | | |||| ||| | || || ||||| || ||| ||||||||||
Sbjct 341 GGAGAGTTCATGGTGGCTC-TCAAGTACGTCACGATCCTCACCATCTTCCTCTTCTCCTT 399
Query 430 TTTCTTCCACTCCCTCTCCATCCGTTTCCTAAACCAAGTCGCCATTCTCGTAAACA-TCC 488
|||| |||||| ||||| || |||||| | ||||||||| ||| ||| | |||| |||
Sbjct 400 CTTCTCCCACTCTCTCTCAATTCGTTTCATCAACCAAGTCAACATCCTCATCAACACTCC 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32404479450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5