BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24800.1
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942039 jgi|Araly1|942039|scaffold_602583.1 1399 0.0
> Ahg942039 jgi|Araly1|942039|scaffold_602583.1
Length=872
Score = 1399 bits (757), Expect = 0.0
Identities = 836/874 (96%), Gaps = 6/874 (1%)
Strand=Plus/Plus
Query 41 GTGTTCACATTCAAAGAAAATGGATAATCACACAGCTAAAGACATTGGTATGAAGAGAAG 100
|||||||||| | || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 4 GTGTTCACATAC-AACAAAATGGATAATCACGCAGCTAAAGACATTGGTATGAAGAGAAG 62
Query 101 TGCTTCTGAGCTGGCTCTACAAGAGTATCTCACTACAAGCCCTCTAGACCCTTGTTTCGA 160
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TGCTTCTGAGTTGGCTCTACAAGAGTATCTCACTACAAGCCCTCTAGACCCTTGTTTCGA 122
Query 161 CCTCATGAACCGGGATTACACTTGTGAGTTAAGAGATAGTCTTTTGTGGTCTGAGGGATT 220
||||| |||||||| | ||||||||||||||||||| |||||||||||||||||| ||
Sbjct 123 TCTCATAAACCGGGA-T--ACTTGTGAGTTAAGAGATATTCTTTTGTGGTCTGAGGGCTT 179
Query 221 GTTTCCGGCTGGACCTTTTCGCGATGCACAGTCCTCAATCTGCGAGAATCTGTCAGCTGA 280
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GATTCCGGCTGGAACTTTTCGCGATGCACAGTCCTCAATCTGCGAGAATCTGTCAGCTGA 239
Query 281 TAGTCCAGTGTCAGCCAATAAACCTGAGGTAAGAGGA-GGAGTTAGGAGAACCACAAGTG 339
|||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 240 TAGTCCAGTGTCAGCCAATAAACCTGAGGTAAGA-GAGGGAGTTAGGAGAACCGTAAGTG 298
Query 340 GATCTTCTCATGTTAACTCTGATGACGAAGATGCCGAGACAGAAGCAGGGCAATCTGAAA 399
||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||
Sbjct 299 GATCTTCTCATGTTAACTCTGATGAAGAAGATGCAGAGACAGAAGCTGGCCAATCTGAAA 358
Query 400 TGACTAATGATCCCAATGATCTGAAACGTATTAGAAGGATGAACTCAAACAGGGAATCAG 459
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 359 TGACTAATGATCCCAATGATCTAAAACGTATTAGAAGGATGAATTCAAACAGAGAATCAG 418
Query 460 CAAAGAGGTCGAGGAGAAGGAAGCAAGAGTACTTGGTAGATCTTGAGACTCAGGTTGATT 519
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAAAGCGGTCGAGGAGAAGGAAGCAAGAGTACTTGGTAGATCTTGAGACTCAGGTTGATT 478
Query 520 CTTTGAAAGGCGATAACTCAACACTGTACAAGCAGCTCATAGACGCAACACAACAGTTTC 579
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 CTTTGAAAGGCGATAACTCAACACTGTACAAGCAGCTCATAGACGCAACACAACAGTTCC 538
Query 580 GTAGCGCTGGAACAAATAACAGAGTTCTCAAATCAGATGTTGAAACTCTGAGAGTCAAGG 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTAGCGCTGGAACAAATAACAGAGTTCTCAAATCAGATGTTGAAACTCTGAGAGTCAAGG 598
Query 640 TGAAACTAGCAGAAGATTTGGTAGCGAGAGGGTCACTCACTAGCAGCTTGAATCAACTTC 699
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 599 TGAAACTAGCAGAAGATTTGGTAGCTAGAGGGTCCCTCACTAGCAGCTTGAACCAACTTC 658
Query 700 TACAAACTCATCTAAGTCCACCATCACACTCCATCAGCAGTCTGCACTACACGGGAAATA 759
|||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||
Sbjct 659 TACAAACTCATCTAAGTCCACCATCACACTCCATCAACAGTTTGCACTACACAGGAAATA 718
Query 760 CCTCGCCCGCCATTACAGTCCACAGTGACCAATCTTTGTTCCCTGGAATGACACTTTCTG 819
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CCTCACCCGCCATTACAGTCCACAGTGACCAATCTTTGTTCCCTGGAATGACACTTTCTG 778
Query 820 GACAGAACTCAAGCCCTGGACTTGGTAATGTATCCAGTGAAGCTGTTAGCTGCGTCTCAG 879
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGCAGAACTCAAGCTCTGGACTTGGTAATGTATCCAGTGAAGCTGTTAGCTGCGTCTCAG 838
Query 880 ACATCTGGCCATGACTCTCTTTCTTCAGAACATG 913
| ||||||||||||||||||||||||| ||||||
Sbjct 839 ATATCTGGCCATGACTCTCTTTCTTCATAACATG 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37970425332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5