BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24800.1 Length=1021 Score E Sequences producing significant alignments: (Bits) Value Ahg942039 jgi|Araly1|942039|scaffold_602583.1 1399 0.0 > Ahg942039 jgi|Araly1|942039|scaffold_602583.1 Length=872 Score = 1399 bits (757), Expect = 0.0 Identities = 836/874 (96%), Gaps = 6/874 (1%) Strand=Plus/Plus Query 41 GTGTTCACATTCAAAGAAAATGGATAATCACACAGCTAAAGACATTGGTATGAAGAGAAG 100 |||||||||| | || ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 4 GTGTTCACATAC-AACAAAATGGATAATCACGCAGCTAAAGACATTGGTATGAAGAGAAG 62 Query 101 TGCTTCTGAGCTGGCTCTACAAGAGTATCTCACTACAAGCCCTCTAGACCCTTGTTTCGA 160 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 TGCTTCTGAGTTGGCTCTACAAGAGTATCTCACTACAAGCCCTCTAGACCCTTGTTTCGA 122 Query 161 CCTCATGAACCGGGATTACACTTGTGAGTTAAGAGATAGTCTTTTGTGGTCTGAGGGATT 220 ||||| |||||||| | ||||||||||||||||||| |||||||||||||||||| || Sbjct 123 TCTCATAAACCGGGA-T--ACTTGTGAGTTAAGAGATATTCTTTTGTGGTCTGAGGGCTT 179 Query 221 GTTTCCGGCTGGACCTTTTCGCGATGCACAGTCCTCAATCTGCGAGAATCTGTCAGCTGA 280 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GATTCCGGCTGGAACTTTTCGCGATGCACAGTCCTCAATCTGCGAGAATCTGTCAGCTGA 239 Query 281 TAGTCCAGTGTCAGCCAATAAACCTGAGGTAAGAGGA-GGAGTTAGGAGAACCACAAGTG 339 |||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 240 TAGTCCAGTGTCAGCCAATAAACCTGAGGTAAGA-GAGGGAGTTAGGAGAACCGTAAGTG 298 Query 340 GATCTTCTCATGTTAACTCTGATGACGAAGATGCCGAGACAGAAGCAGGGCAATCTGAAA 399 ||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||| Sbjct 299 GATCTTCTCATGTTAACTCTGATGAAGAAGATGCAGAGACAGAAGCTGGCCAATCTGAAA 358 Query 400 TGACTAATGATCCCAATGATCTGAAACGTATTAGAAGGATGAACTCAAACAGGGAATCAG 459 |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| Sbjct 359 TGACTAATGATCCCAATGATCTAAAACGTATTAGAAGGATGAATTCAAACAGAGAATCAG 418 Query 460 CAAAGAGGTCGAGGAGAAGGAAGCAAGAGTACTTGGTAGATCTTGAGACTCAGGTTGATT 519 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 CAAAGCGGTCGAGGAGAAGGAAGCAAGAGTACTTGGTAGATCTTGAGACTCAGGTTGATT 478 Query 520 CTTTGAAAGGCGATAACTCAACACTGTACAAGCAGCTCATAGACGCAACACAACAGTTTC 579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 479 CTTTGAAAGGCGATAACTCAACACTGTACAAGCAGCTCATAGACGCAACACAACAGTTCC 538 Query 580 GTAGCGCTGGAACAAATAACAGAGTTCTCAAATCAGATGTTGAAACTCTGAGAGTCAAGG 639 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 GTAGCGCTGGAACAAATAACAGAGTTCTCAAATCAGATGTTGAAACTCTGAGAGTCAAGG 598 Query 640 TGAAACTAGCAGAAGATTTGGTAGCGAGAGGGTCACTCACTAGCAGCTTGAATCAACTTC 699 ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| Sbjct 599 TGAAACTAGCAGAAGATTTGGTAGCTAGAGGGTCCCTCACTAGCAGCTTGAACCAACTTC 658 Query 700 TACAAACTCATCTAAGTCCACCATCACACTCCATCAGCAGTCTGCACTACACGGGAAATA 759 |||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| Sbjct 659 TACAAACTCATCTAAGTCCACCATCACACTCCATCAACAGTTTGCACTACACAGGAAATA 718 Query 760 CCTCGCCCGCCATTACAGTCCACAGTGACCAATCTTTGTTCCCTGGAATGACACTTTCTG 819 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 CCTCACCCGCCATTACAGTCCACAGTGACCAATCTTTGTTCCCTGGAATGACACTTTCTG 778 Query 820 GACAGAACTCAAGCCCTGGACTTGGTAATGTATCCAGTGAAGCTGTTAGCTGCGTCTCAG 879 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GGCAGAACTCAAGCTCTGGACTTGGTAATGTATCCAGTGAAGCTGTTAGCTGCGTCTCAG 838 Query 880 ACATCTGGCCATGACTCTCTTTCTTCAGAACATG 913 | ||||||||||||||||||||||||| |||||| Sbjct 839 ATATCTGGCCATGACTCTCTTTCTTCATAACATG 872 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37970425332 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5