BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24820.1 Length=1224 Score E Sequences producing significant alignments: (Bits) Value Ahg489345 jgi|Araly1|489345|fgenesh2_kg.6__2479__AT5G24820.1 1853 0.0 > Ahg489345 jgi|Araly1|489345|fgenesh2_kg.6__2479__AT5G24820.1 Length=1218 Score = 1853 bits (1003), Expect = 0.0 Identities = 1134/1197 (95%), Gaps = 10/1197 (1%) Strand=Plus/Plus Query 32 TTCTTCTTCTGCTCCTCTTCACT-GTACTAACTCATAACTCTAGCCTTGAAGATGATCTC 90 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 26 TTCTTCTTCTGCTCCTCTTCA-TAGTACTAACTCATAACTCTAGCCTTGAAGATGATCTC 84 Query 91 CCGAATGATATACCGAACGGCTTTTTCTTACCTTTCGAATCTAATCTTTACGTTGAGATC 150 |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| Sbjct 85 CCGAATGATATACCAAACGGCTTCTACTTACCTTTCGAATCTAATCTTTACGTTGAGATC 144 Query 151 ACCATTGGAACCCCAACACGAACCTTTAACCTCAAGCTAGACTCTTCTACACATCTCACA 210 ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 145 ACCATTGGAACCCCAACGCGAACCTTTAACCTCAAACTAGACTCGTCTACACATCTCACA 204 Query 211 TGCCTCGATAATGATGATGACCACCAATGCTCCCTCTCAGACAAATCTTCCAACACTTTC 270 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 205 TGCCTTGATAATGATGATGACCACCAATGCTCACTCTCAGACAAATCTTCCAACACTTTC 264 Query 271 TCTACAATCTCTTGCAATAACTCTTCTCTTTGTCCTCATGTCTCCACCAATTACACTAAC 330 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 265 TCTACAATCTCTTGCAATAACTCTTCTCTTTGTCCTCATGTCTCCACCAATTCCACTAAC 324 Query 331 TATTTcaacgcaacaacaac-aaacacaacaacTTCTGTCTCTCTTCTCTGCACTCCTTC 389 |||||||| |||||||||| ||| |||||||||||| | |||||||||||||||||||| Sbjct 325 CATTTCAACACAACAACAACGAAA-ACAACAACTTCTCTATCTCTTCTCTGCACTCCTTC 383 Query 390 CGATTTCTGCCGCTACGAGGCCTCTCCCTCTAGCTCCGGCTACCTTGTCTCCGACACACT 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 CGATTTCTGCCGCTACGAGGCCTCTCCCTCTAGCTCCGGCTACCTTGTCTCCGACACACT 443 Query 450 TCAGTTAACTTCCTCAATCACCGACCAAGAAAACTCTCTCTCTATAG-TGCGAGGGTTTG 508 |||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| Sbjct 444 TCAGTTAACTTCCTCAATCACCGACCAAGAAAACTCTCTCTCCATAGCT-CGAGGGTTTG 502 Query 509 TCTTTGGCTGCGGGGCTAGAAACCGTGCGACGCCGGAGGAAGACGGTGGTGGCGTCGACG 568 ||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| | Sbjct 503 TCTTTGGCTGCGGGGCTAGTAACCGTGCGACGCCGGAGGAAGACGGAGGAGGCGTCGATG 562 Query 569 GGAGACTT-AGTCTAACGACTCACCGTTTCTCGCTCCTCTCTCAGCTACGTCTCACAAGA 627 ||||| || |||||||| ||||| |||||||| ||||||||||||| |||||||||||| Sbjct 563 GGAGA-TTGAGTCTAACAACTCATCGTTTCTCTTTCCTCTCTCAGCTTCGTCTCACAAGA 621 Query 628 TTTTCACACTGTCTTTGGCCTTCCGCAGCCGGGTCGCGTAACTACATCCGTCTCGGATCA 687 |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 622 TTTTCACATTGTCTTTGGCCTTCCTCCGCCGGGTCGCGTAACTACATCCGTCTCGGATCA 681 Query 688 GCGGCTTCGTACGGCGGCGATATGGTGTTGGTTCCGATGTTAAACATGACGGGGACGGAA 747 |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 682 GCGGCTTCCTACGGCGGCGATATGGTGTTGGTTCCGATGTTAAACACGACGGGGACGGAA 741 Query 748 GCTTACTCGTATCACGTTGCTCTCTTCGGGATCAGTCTTGGCCAACAGAGAATGAGAAGC 807 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 742 GCTTACTCGTATCACGTTGCTCTCTTCGGGATCAGTCTTGCCCAACAGAGAATGAGAAGC 801 Query 808 AATGAGAGTAGTGGAATAGCAATAGACGTTGGGACTTACTACACGAGTCTAGAGCCATCA 867 | ||||| ||||||| |||||||||| | || || |||||||||||||||||||||||| Sbjct 802 AGTGAGACTAGTGGACTAGCAATAGATATCGGAACCTACTACACGAGTCTAGAGCCATCA 861 Query 868 CTCTACGAGGAGGTGAAGGAAGAGCTAACGGCGCAGATTGGACCAGCGGTCGCATACGAA 927 ||||||||||||||||| |||||||||| |||||||||||||||| | |||||||||||| Sbjct 862 CTCTACGAGGAGGTGAAAGAAGAGCTAATGGCGCAGATTGGACCAACAGTCGCATACGAA 921 Query 928 GTGAACGAACTAATGTGTTTCACAACCGAGGTTGGGTTAGAGATAGATTCATTGCCTAAA 987 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 922 GTGAACGAACTAATGTGTTTCACAACCGAGGTTGGGTTAGATATAGATTCATTGCCCAAA 981 Query 988 CTCACTCTTCATTTCCAAGGATTA-GATTACACTATCTCAAACAAAGGACTTTATCTCCA 1046 |||||| ||||||||||||||| | |||||||| ||||||||||||||||| ||||||| Sbjct 982 CTCACTTTTCATTTCCAAGGAT-ACGATTACACAATCTCAAACAAAGGACTCTATCTCCG 1040 Query 1047 AGACAGCCCATCTTCTCTCTGCACGGCTTTGGTCAGATCATCGATGAAAGATGAGGAAAG 1106 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1041 AGACAGCCCATCTTCTCTCTGCACAGCTTTGGTCAGATCATCGATGAAAGATGAGGAAAG 1100 Query 1107 GATTAATGTGCTTGGAGCATCAGCTTTTGTTGATCATGCAGTTGGGTATGACACTTCACA 1166 |||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 1101 GATTAATGTGATTGGAGCATCAGCTCTTGTTGATCATGCAGTTGGGTACGACACTTCACA 1160 Query 1167 GAGGATGCTTGCCTTTCAACAAAGGGATTGTTTGGCCGATTTCGTAGATGGTATGTA 1223 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1161 GAGGATGCTTGCCTTTCAACAAAGGGATTGTTTATCCGATTTCGTAGATGGTATGTA 1217 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45709377483 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5