BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24820.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489345 jgi|Araly1|489345|fgenesh2_kg.6__2479__AT5G24820.1 1853 0.0
> Ahg489345 jgi|Araly1|489345|fgenesh2_kg.6__2479__AT5G24820.1
Length=1218
Score = 1853 bits (1003), Expect = 0.0
Identities = 1134/1197 (95%), Gaps = 10/1197 (1%)
Strand=Plus/Plus
Query 32 TTCTTCTTCTGCTCCTCTTCACT-GTACTAACTCATAACTCTAGCCTTGAAGATGATCTC 90
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 26 TTCTTCTTCTGCTCCTCTTCA-TAGTACTAACTCATAACTCTAGCCTTGAAGATGATCTC 84
Query 91 CCGAATGATATACCGAACGGCTTTTTCTTACCTTTCGAATCTAATCTTTACGTTGAGATC 150
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 85 CCGAATGATATACCAAACGGCTTCTACTTACCTTTCGAATCTAATCTTTACGTTGAGATC 144
Query 151 ACCATTGGAACCCCAACACGAACCTTTAACCTCAAGCTAGACTCTTCTACACATCTCACA 210
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 145 ACCATTGGAACCCCAACGCGAACCTTTAACCTCAAACTAGACTCGTCTACACATCTCACA 204
Query 211 TGCCTCGATAATGATGATGACCACCAATGCTCCCTCTCAGACAAATCTTCCAACACTTTC 270
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 205 TGCCTTGATAATGATGATGACCACCAATGCTCACTCTCAGACAAATCTTCCAACACTTTC 264
Query 271 TCTACAATCTCTTGCAATAACTCTTCTCTTTGTCCTCATGTCTCCACCAATTACACTAAC 330
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 265 TCTACAATCTCTTGCAATAACTCTTCTCTTTGTCCTCATGTCTCCACCAATTCCACTAAC 324
Query 331 TATTTcaacgcaacaacaac-aaacacaacaacTTCTGTCTCTCTTCTCTGCACTCCTTC 389
|||||||| |||||||||| ||| |||||||||||| | ||||||||||||||||||||
Sbjct 325 CATTTCAACACAACAACAACGAAA-ACAACAACTTCTCTATCTCTTCTCTGCACTCCTTC 383
Query 390 CGATTTCTGCCGCTACGAGGCCTCTCCCTCTAGCTCCGGCTACCTTGTCTCCGACACACT 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 CGATTTCTGCCGCTACGAGGCCTCTCCCTCTAGCTCCGGCTACCTTGTCTCCGACACACT 443
Query 450 TCAGTTAACTTCCTCAATCACCGACCAAGAAAACTCTCTCTCTATAG-TGCGAGGGTTTG 508
|||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 444 TCAGTTAACTTCCTCAATCACCGACCAAGAAAACTCTCTCTCCATAGCT-CGAGGGTTTG 502
Query 509 TCTTTGGCTGCGGGGCTAGAAACCGTGCGACGCCGGAGGAAGACGGTGGTGGCGTCGACG 568
||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 503 TCTTTGGCTGCGGGGCTAGTAACCGTGCGACGCCGGAGGAAGACGGAGGAGGCGTCGATG 562
Query 569 GGAGACTT-AGTCTAACGACTCACCGTTTCTCGCTCCTCTCTCAGCTACGTCTCACAAGA 627
||||| || |||||||| ||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 563 GGAGA-TTGAGTCTAACAACTCATCGTTTCTCTTTCCTCTCTCAGCTTCGTCTCACAAGA 621
Query 628 TTTTCACACTGTCTTTGGCCTTCCGCAGCCGGGTCGCGTAACTACATCCGTCTCGGATCA 687
|||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 622 TTTTCACATTGTCTTTGGCCTTCCTCCGCCGGGTCGCGTAACTACATCCGTCTCGGATCA 681
Query 688 GCGGCTTCGTACGGCGGCGATATGGTGTTGGTTCCGATGTTAAACATGACGGGGACGGAA 747
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 682 GCGGCTTCCTACGGCGGCGATATGGTGTTGGTTCCGATGTTAAACACGACGGGGACGGAA 741
Query 748 GCTTACTCGTATCACGTTGCTCTCTTCGGGATCAGTCTTGGCCAACAGAGAATGAGAAGC 807
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 742 GCTTACTCGTATCACGTTGCTCTCTTCGGGATCAGTCTTGCCCAACAGAGAATGAGAAGC 801
Query 808 AATGAGAGTAGTGGAATAGCAATAGACGTTGGGACTTACTACACGAGTCTAGAGCCATCA 867
| ||||| ||||||| |||||||||| | || || ||||||||||||||||||||||||
Sbjct 802 AGTGAGACTAGTGGACTAGCAATAGATATCGGAACCTACTACACGAGTCTAGAGCCATCA 861
Query 868 CTCTACGAGGAGGTGAAGGAAGAGCTAACGGCGCAGATTGGACCAGCGGTCGCATACGAA 927
||||||||||||||||| |||||||||| |||||||||||||||| | ||||||||||||
Sbjct 862 CTCTACGAGGAGGTGAAAGAAGAGCTAATGGCGCAGATTGGACCAACAGTCGCATACGAA 921
Query 928 GTGAACGAACTAATGTGTTTCACAACCGAGGTTGGGTTAGAGATAGATTCATTGCCTAAA 987
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 922 GTGAACGAACTAATGTGTTTCACAACCGAGGTTGGGTTAGATATAGATTCATTGCCCAAA 981
Query 988 CTCACTCTTCATTTCCAAGGATTA-GATTACACTATCTCAAACAAAGGACTTTATCTCCA 1046
|||||| ||||||||||||||| | |||||||| ||||||||||||||||| |||||||
Sbjct 982 CTCACTTTTCATTTCCAAGGAT-ACGATTACACAATCTCAAACAAAGGACTCTATCTCCG 1040
Query 1047 AGACAGCCCATCTTCTCTCTGCACGGCTTTGGTCAGATCATCGATGAAAGATGAGGAAAG 1106
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1041 AGACAGCCCATCTTCTCTCTGCACAGCTTTGGTCAGATCATCGATGAAAGATGAGGAAAG 1100
Query 1107 GATTAATGTGCTTGGAGCATCAGCTTTTGTTGATCATGCAGTTGGGTATGACACTTCACA 1166
|||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1101 GATTAATGTGATTGGAGCATCAGCTCTTGTTGATCATGCAGTTGGGTACGACACTTCACA 1160
Query 1167 GAGGATGCTTGCCTTTCAACAAAGGGATTGTTTGGCCGATTTCGTAGATGGTATGTA 1223
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1161 GAGGATGCTTGCCTTTCAACAAAGGGATTGTTTATCCGATTTCGTAGATGGTATGTA 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5