BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24840.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489346 jgi|Araly1|489346|fgenesh2_kg.6__2480__AT5G24840.1 1243 0.0
> Ahg489346 jgi|Araly1|489346|fgenesh2_kg.6__2480__AT5G24840.1
Length=867
Score = 1243 bits (673), Expect = 0.0
Identities = 806/870 (93%), Gaps = 10/870 (1%)
Strand=Plus/Plus
Query 65 TGATAATGGACAATGAGACGAAAGCAACCACCTTCAGCAAATCAACAGGGCTTCCTAGGA 124
|||||||||| | |||||||||| ||||||||||||||||||| || ||||||||| |||
Sbjct 1 TGATAATGGATAGTGAGACGAAACCAACCACCTTCAGCAAATCTACGGGGCTTCCTCGGA 60
Query 125 AGAGATTCTACAGAGCAAGAGCTCATAGTAACCCACTTAGCGATTCTCACTTCCCAATCC 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 61 AGAGATTCTACAGAGCAAGAGCTCATAGTAACCCACTTAGTGATTCTCACTTCCCGATAC 120
Query 185 CCATATCTCCAGCTCATGTCGACTATTCACTTCACTTCCCCAAATTCGTTGAAGCTGACA 244
| || ||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||
Sbjct 121 CGATTTCTCCGGCTCATGTCGATTTTTCACTTCACTTTCCCAAATTCGTTGAAGCTGACA 180
Query 245 ACAAATTCAT-CAAGAAGGTTGAGTTTGCGGATATCGGATGCGGGTTTGGTGGCCTACTA 303
||||| | || |||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 181 ACAAAAT-ATCCAAGAAGGTTGAGTTTGCGGATATTGGATGCGGGTTTGGTGGTTTGCTA 239
Query 304 ATCTCCCTTGCGACGCTTTTCCCCGATACGCTAATGATCGGTATGGAGCTCAGAGATAAA 363
|| |||||||||||||| ||||| ||||| |||||||||||||||||| | |||||||||
Sbjct 240 ATTTCCCTTGCGACGCTGTTCCCTGATACTCTAATGATCGGTATGGAGTTGAGAGATAAA 299
Query 364 GTGACGGAGTACGTTAAAGAACGGATCTTAGCTTTAAGGAGAACAAGCTCGGAGGGACAG 423
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 GTGACGGAATACGTTAAGGAACGGATCTTAGCTTTAAGGAGAACGAGCTCGGAGGGACAG 359
Query 424 TATGAGAACATCTCCGTTGTTAGGACAAACTCGATGAAGTACATTCCGAATTACTTCGAG 483
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 360 TACGAGAACATCTCTGTTGTTAGGACAAACTCGATGAAGTACATTCCGAATTATTTTGAG 419
Query 484 AAAGGACAGCTTTCGAAGATGTTTTTCCTCTTCCCTGATCCACATTTTAAGGAGAAGAAT 543
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 420 AAAGGACAGCTTTCGAAGATGTTTTTCCTCTTCCCTGATCCACATTTCAAGGAGAAGAAT 479
Query 544 CATAGGAGGAGAGTGATTAGTACTCATTTGTTAGATGAGTATGCTTATGTTCTTAGAGCT 603
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CACAGGAGGAGAGTGATTAGTACTCATTTGTTAGATGAGTATGCTTATGTTCTTAGAGCT 539
Query 604 GGTGGGATTATTTACACAATCACTGATGTAGAGGAGCTTGGAGAGTGGATGAAGTCTTGC 663
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 540 GGTGGGATTATTTACACAATCACTGATGTGGAGGAGCTTGGAGAGTGGATGAAGGCTTGC 599
Query 664 TTAGAGAAACATCCGATGTTTGAATCTCTAACACAAGAAGAGCTTGTTTCGGATCCTGTT 723
|||||||| ||||||||||||||||| || |||||||||||||||| ||||||||| |||
Sbjct 600 TTAGAGAAGCATCCGATGTTTGAATCACTTACACAAGAAGAGCTTGATTCGGATCCCGTT 659
Query 724 GTTGAGCTTCTATGCAGTGCTACTGAGGAAGGACAGAAAGTTGCTAGAAATGGTGGACAG 783
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 660 GTCGAGCTTCTATGCAGTGCTACTGAGGAAGGACAGAAAGTTGCCAGAAATGGAGGACAG 719
Query 784 ACTTTCAGAGCAGTTTTTAGACGCATTGCATATGTTTCTTGAATTCTTTATTTCTCGTTG 843
|||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 720 ACTTTCAGAGCAGTTTTTAGACGCATTGCATATGTTTCTTGAATTCAGTCTTTCTC-TTG 778
Query 844 -TAGTAATCTT-T-GTTGTAACACA-GCTTCTTTCTTAAT-TTCAAAATTTTGGGATAAT 898
|||||||||| | ||||||||| | |||||||||||||| || |||||||||||||| |
Sbjct 779 GTAGTAATCTTATTGTTGTAACAAAAGCTTCTTTCTTAATCTT-AAAATTTTGGGATAGT 837
Query 899 ATT-ACAGAAGTTGAGAAATTATTGTTCTA 927
|| |||||| || |||||||||| |||||
Sbjct 838 GTTTACAGAAATTTAGAAATTATTCTTCTA 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5