BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24850.1
Length=1789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894396 jgi|Araly1|894396|Al_scaffold_0006_2392 2580 0.0
> Ahg894396 jgi|Araly1|894396|Al_scaffold_0006_2392
Length=1701
Score = 2580 bits (1397), Expect = 0.0
Identities = 1583/1673 (95%), Gaps = 11/1673 (1%)
Strand=Plus/Plus
Query 1 AAACCCACTTCGCAGATTCACTCTTCACCATCTTCACCTCTCAAAGAAACCCCTTTCTTC 60
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 39 AAACCCACTTCGCAGATTCACTCTTCACCATCTTCACCTCTCAAACAAACCCTTTTCTTC 98
Query 61 CTCTTCTCTGTTCCTCTGCTCCGCCGCAAAAATGAACGACCATATCCACCGTGTTCCGGC 120
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 99 TTCTTCTCTGTTCCTCTGCTCCGTCGCAACAATGAACGACCATATCCACCGTGTTCCAGC 158
Query 121 TCTCACCGAGGAAGAGATTGACTCCGTCGCCATAAAAACATTTGAGAGATACGCATTACC 180
||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 159 TCTCAACGAGGAAGAGATTGATTCAGTCGCCATAAAAACATTTGAGAGATACGCATTACC 218
Query 181 TTCTTCTTCCTCCGTTAAGAGAAAGGGGAAAGGAGTAACGATTCTCTGGTTCAGAAACGA 240
|||||||||| || || ||||| || |||||| |||||||||| ||||| ||||||||
Sbjct 219 TTCTTCTTCC-ACG--AAAAGAAACGGCAAAGGAATAACGATTCTTTGGTTTAGAAACGA 275
Query 241 TCTCAGAGTTCTTGACAATGACGCATTGTACAAAGCTTGGTCTTCCTCTGATACCATTTT 300
||| ||||||||||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 276 TCTTAGAGTTCTTGATAACGACGCATTGTACAAAGCTTGGTCTTCCTCTGATACCCTTTT 335
Query 301 GCCTGTTTACTGTCTCGATCCTCGTCTCTTTCACACTACTCATTTCTTCAACTTCCCTAA 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 336 GCCTGTTTACTGTCTCGATCCTCGTCTCTTTCACACTACTCATTTCTTTAACTTCCCTAA 395
Query 361 AACCGGAGCTTTAAGAGGCGGTTTTCTTATGGAATGTTTGGTTGATTTGAGAAAGAATCT 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 396 AACCGGAGCTTTAAGAGGTGGTTTTCTTATGGAATGTTTGGTTGATTTGAGAAAGAATCT 455
Query 421 TATGAAACGAGGATTGAATCTTCTTATTAGAAGTGGTAAACCAGAAGAGATTCTTCCTTC 480
||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 456 TATGAAAAGAGGATTGAATCTTCTTATTCGAAGTGGTAAACCTGAAGAGATTCTTCCTTC 515
Query 481 TCTTGCTAAAGATTTTGGAGCTCGTACAGTTTTTGCGCATAAAGAAACGTGTAGTGAGGA 540
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||
Sbjct 516 TCTTGCTAAAGATTTTGGAGCTCATACAGTCTTTGCTCATAAAGAAACGTGTAGTGAGGA 575
Query 541 GGTAGACGTTGAAAGACTTGTGAATCAAGGTTTGAAAAGG-GTTGGAAATAGTACTAAGC 599
| || | ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||
Sbjct 576 GCTACATGTTGAAAGACTTGTGAATCAAGGTTTG-AAAGGAGTTGGAAATGGTACTAAGC 634
Query 600 TTGAGCTCATTTGGGGAAGTACTATGTATCACAAAGATGATCTTCCTTTTGATGTTTTTG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 TTGAGCTCATTTGGGGAAGTACTATGTATCACAAAGATGATCTTCCTTTTGATGTTTTTG 694
Query 660 ACTTGCCTGATGTCTACACTCAGTTTCGTAAGTCGGTGGAAGCTAAGTGTAGTATCAGAA 719
| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 695 ATTTGCCTGATGTTTACACTCAGTTTCGTAAGTCCGTGGAAGCCAAGTGTAGTATCAGAA 754
Query 720 GCTCTACTCGCATTCCACTATCTCTAGGGCCAACACCTTCTGTTGATGATTGGGGAGATG 779
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 755 GCTCCACTCGCATTCCACTTTCTCTAGGGCCAACACCTTCTGTTGATGATTGGGGAGATG 814
Query 780 TTCCAACTCTTGAGAAACTTGGGGTTGAGCCTCAAGAGGTAACCAGAGGAATGCGATTCG 839
|||||||||||||| ||||||| |||| || |||||||| ||| |||||||||||||||
Sbjct 815 TTCCAACTCTTGAGCAACTTGGAATTGAACCACAAGAGGTGACCCGAGGAATGCGATTCG 874
Query 840 TTGGTGGTGAAAGTGCAGGAGTAGGCAGAGTATTTGAGTACTTTTGGAAAAAGGATCTAT 899
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 875 TGGGTGGTGAAAGTGCAGGAGTAGGCAGAGTATTTGAGTACTTTTGGAAGAAGGATCTAT 934
Query 900 TGAAAGTATACAAAGAGACGAGGAACGGAATGTTAGGACCTGATTATTCGACGAAATTCT 959
|||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 935 TGAAAGTATATAAAGATACGAGAAACGGAATGTTGGGACCTGATTATTCGACGAAATTCT 994
Query 960 CTCCTTGGCTTGCCTTTGGGTGTATCTCTCCTCGTTTTATCTATGAAGAGGTCCAAAGAT 1019
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 CACCATGGCTTGCCTTTGGGTGTATCTCTCCTCGTTTTATCTATGAAGAGGTCCAAAGAT 1054
Query 1020 ATGAAAAGGAAAGAGTAGCAAATAATTCAACATACTGGGTACTTTTTGAACTAATATGGA 1079
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1055 ATGAAAAGGAAAGAGTAGCAAACAATTCAACATACTGGGTACTTTTTGAATTAATATGGA 1114
Query 1080 GAGATTACTTCAGGTTTCTTTCAATTAAGTGTGGAAACTCACTTTTTCATCTAGGTGGCC 1139
| || ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1115 GGGACTACTTTAGGTTTCTTTCAATTAAGTGTGGAAACTCCCTCTTTCATCTAGGTGGCC 1174
Query 1140 CGAGAAATGTGCAAGGGAAGTGGAGCCAAGATCAGAAACTATTTGAGTCTTGGAGAGATG 1199
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1175 CGAGAAATGTGCAAGGGAAGTGGAGTCAAGATCAAAAACTATTTGAGTCTTGGAGAGATG 1234
Query 1200 CCAAGACAGGGTATCCTCTTATAGATGCAAACATGAAGGAGTTATCCACTACAGGTTTCA 1259
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1235 GCAAGACAGGGTATCCTCTTATAGATGCAAACATGAAGGAGTTATACACTACAGGTTTCA 1294
Query 1260 TGTCAAATCGAGGCCGACAGATTGTTTGTTCGTTTCTTGTCCGGGACATGGGGTTGGATT 1319
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1295 TGTCAAATCGAGGCCGACAGATAGTTTGTTCGTTTCTTGTCCGGGACATGGGGTTGGATT 1354
Query 1320 GGCGTATGGGTGCAGAATGGTTTGAGACATGTCTATTAGACTATGATCCTTGTTCTAATT 1379
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1355 GGCGCATGGGTGCAGAATGGTTTGAGACATGTCTATTAGACTATGATCCATGTTCTAATT 1414
Query 1380 ATGGAAACTGGACCTATGGAGCAGGAGTTGGAAATGATCCACGGGAAGACCGGTACTTCA 1439
| || ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 1415 ACGGTAACTGGACCTATGGAGCAGGAGTCGGAAATGATCCCCGAGAAGACCGGTACTTCA 1474
Query 1440 GCATTCCCAAGCAAGCACAAAACTATGATCCAGAAGGAGAATACGTTGCGTTTTGGCTGC 1499
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1475 GCATTCCCAAACAAGCACAAAATTATGATCCAGAAGGAGAATACGTTGCGTTTTGGCTGC 1534
Query 1500 AGCAGCTACGTCGGCTTCCGAAAGAGAAAAGACATTGGCCAGGGAGATTGATGTATATGG 1559
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 AGCAGCTACGCCGGCTTCCGAAAGAGAAAAGACATTGGCCAGGGAGATTGATGTATATGG 1594
Query 1560 ACACAGTTGTGCCATTGAAGCATGGTAATGGTCCAATGGCTGGAGGGTCAAAGTCTGGGG 1619
|||||||||||||||||||||||||| | ||||||||||||||| |||||||| |
Sbjct 1595 ACACAGTTGTGCCATTGAAGCATGGTCA------AATGGCTGGAGGGTCCAAGTCTGGTG 1648
Query 1620 GTGGCTTCAGAGGGAGTCACAGTGGGAGACGTTCTAGACACAATGGTCCTTAG 1672
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 GTGGTTTCAGAGGGAGTCACAGTGGGAGACGTTCTAGACACAATGGTCCTTAG 1701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67153101935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5