BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G24860.1 Length=672 Score E Sequences producing significant alignments: (Bits) Value Ahg942046 jgi|Araly1|942046|scaffold_602590.1 610 4e-174 > Ahg942046 jgi|Araly1|942046|scaffold_602590.1 Length=372 Score = 610 bits (330), Expect = 4e-174 Identities = 356/368 (97%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 24 AAGGAGAGGAAGAAGAAGATCATGTCAGGCGTGTGGGTCTTCAAGAACGGAGTGATAAGA 83 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 AAGGAGAGGAAGAAGAAGATCATGTCAGGCGTGTGGGTGTTCAAGAACGGAGTGATAAGA 60 Query 84 CTTGTGGAGAACCCTAACCAGTCAGGATCCGACACACAGAACCGAAGGAAAGTGATGGTC 143 ||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| Sbjct 61 CTTGTGGAGAACCCTGACCAGTCAGGATCCGACACACACAGCCGAAGGAAAGTGATGGTC 120 Query 144 TATTTACCGACAGGAGAAGTGGTCTCATCTTACTCGACGCTCGAGCAGATCCTCCAGAGT 203 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 TATTTACCGACAGGAGAAGTTGTCTCATCTTACTCGACGCTCGAGCAGATCCTCCAGAGT 180 Query 204 CTTGGATGGGAGAGATACTTTGGCGGCGGCGACACAGATCTCCTCCAATTCCACAAACGC 263 |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 181 CTTGGATGGGAGAGGTACTTT---GGCGGCGACACAGATCTCCTCCAATTCCACAAACGC 237 Query 264 TCCTCCATTGATCTCATTTCCCTGCCTAGAGATTTCACCAAATTCAACTCCGTTTACATG 323 ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct 238 TCCTCCATTGATCTCATCTCTCTTCCTAGAGATTTCACCAAATTCAACTCCGTTTACATG 297 Query 324 TACGATATCGTCGTCAAGAACCCTAATTACTTCCATGTCCGAGACTCCCATTGATTCTTC 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 TACGATATCGTCGTCAAGAACCCTAATTACTTCCATGTCCGAGACTCCCATTGATTCTTC 357 Query 384 TTTtgtgt 391 |||||||| Sbjct 358 TTTTGTGT 365 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24665527299 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5