BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G24860.1

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942046 jgi|Araly1|942046|scaffold_602590.1                        610    4e-174


> Ahg942046 jgi|Araly1|942046|scaffold_602590.1
Length=372

 Score =  610 bits (330),  Expect = 4e-174
 Identities = 356/368 (97%), Gaps = 3/368 (1%)
 Strand=Plus/Plus

Query  24   AAGGAGAGGAAGAAGAAGATCATGTCAGGCGTGTGGGTCTTCAAGAACGGAGTGATAAGA  83
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1    AAGGAGAGGAAGAAGAAGATCATGTCAGGCGTGTGGGTGTTCAAGAACGGAGTGATAAGA  60

Query  84   CTTGTGGAGAACCCTAACCAGTCAGGATCCGACACACAGAACCGAAGGAAAGTGATGGTC  143
            ||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct  61   CTTGTGGAGAACCCTGACCAGTCAGGATCCGACACACACAGCCGAAGGAAAGTGATGGTC  120

Query  144  TATTTACCGACAGGAGAAGTGGTCTCATCTTACTCGACGCTCGAGCAGATCCTCCAGAGT  203
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  TATTTACCGACAGGAGAAGTTGTCTCATCTTACTCGACGCTCGAGCAGATCCTCCAGAGT  180

Query  204  CTTGGATGGGAGAGATACTTTGGCGGCGGCGACACAGATCTCCTCCAATTCCACAAACGC  263
            |||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||
Sbjct  181  CTTGGATGGGAGAGGTACTTT---GGCGGCGACACAGATCTCCTCCAATTCCACAAACGC  237

Query  264  TCCTCCATTGATCTCATTTCCCTGCCTAGAGATTTCACCAAATTCAACTCCGTTTACATG  323
            ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct  238  TCCTCCATTGATCTCATCTCTCTTCCTAGAGATTTCACCAAATTCAACTCCGTTTACATG  297

Query  324  TACGATATCGTCGTCAAGAACCCTAATTACTTCCATGTCCGAGACTCCCATTGATTCTTC  383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  TACGATATCGTCGTCAAGAACCCTAATTACTTCCATGTCCGAGACTCCCATTGATTCTTC  357

Query  384  TTTtgtgt  391
            ||||||||
Sbjct  358  TTTTGTGT  365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24665527299


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5