BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G24879.1

Length=114
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942048 jgi|Araly1|942048|scaffold_602592.1                        206    3e-53


> Ahg942048 jgi|Araly1|942048|scaffold_602592.1
Length=279

 Score =  206 bits (111),  Expect = 3e-53
 Identities = 113/114 (99%), Gaps = 0/114 (0%)
 Strand=Plus/Plus

Query  1    ATGAGAATCGATTACTTATGTGATTGTAAAACGGAGCTTAAATCTCGCAATTGCTTGGGT  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  145  ATGAGAATCGATTACTTATGTGATTGTAAAACGGAGCTTAAATCTCGCAATTTCTTGGGT  204

Query  61   GGTAATGGTGGTGGAGGCCATCAATCTCCTAACAAATTTAAAATCAAAAACTAA  114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  205  GGTAATGGTGGTGGAGGCCATCAATCTCCTAACAAATTTAAAATCAAAAACTAA  258



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 3516325836


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5