BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24880.1
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489351 jgi|Araly1|489351|fgenesh2_kg.6__2485__AT5G24880.1 1779 0.0
Ahg940535 jgi|Araly1|940535|scaffold_601079.1 241 1e-62
> Ahg489351 jgi|Araly1|489351|fgenesh2_kg.6__2485__AT5G24880.1
Length=1314
Score = 1779 bits (963), Expect = 0.0
Identities = 1221/1341 (91%), Gaps = 36/1341 (3%)
Strand=Plus/Plus
Query 1 ATGGCAACGACGTCAAGCACGACAAAAGCAAAACCGGACAACCAAAACCTAAGCAGAACA 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1 ATGGCAACGACGTCAAGCACGACAAAAGCAAAACCGGATAACCAAAACCTAACCAGAACC 60
Query 61 AAATCTCTCGGTAGAAAACCAAAGCAACCTTTGTCGACTGCGTCATCAGAAGATGGGTCG 120
||||||||||||||||||||||||| ||||| ||| || | ||||||||||||| || |
Sbjct 61 AAATCTCTCGGTAGAAAACCAAAGCTACCTTCGTCCACGGGGTCATCAGAAGAT-GG--G 117
Query 121 TCTGATCAGAAACCGGAGAAGCCTTTGCCAAACTATTTGAAACCAACAATCAGTTCAAGA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 118 TCTGATCAGAAACCGGAGAAGCCTTTGCCAAACTATTTGAAACCAACAATCAGTTCGAGA 177
Query 181 CCCGACGCAGGCAAGCTCTTGAAGAAGAACAACAATAGTCTTGATGATAACCAAAAGCTT 240
|||||| ||| |||| | |||||||||||||||| |||||||||||||||||| ||||||
Sbjct 178 CCCGACCCAGTCAAGTTATTGAAGAAGAACAACAGTAGTCTTGATGATAACCAGAAGCTT 237
Query 241 CTCCGTAGAAGATCTTTTGATCGACCTCCTTCTTCTTTGACTTCTCCTTCTACTTCTGCT 300
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTTCGTAGAAGATCCTTTGATCGACCTCCTTCTTCTTTGACTTCTCCTTCTACTTCTGCT 297
Query 301 TCTCCGCGTATCCAAAAATCCCTCAACGTCTCTCCTTCTCGCTCACGAGACAGACCAGCG 360
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 298 TCTCCGCGTATCCAAAAATCCCTCAACGTATCTCCTTCTCGCTCACGAGATAGACCAGCG 357
Query 361 GTTCCAAGAGAGAAGCCTGTCACAGCTCTACGCTCTTCGTCTTTCCATGGAAGTAGAAAC 420
|||| |||||||||||||| ||||||| |||||||||||||||||||||||| ||| |
Sbjct 358 TTTCCTAGAGAGAAGCCTGTTACAGCTCAACGCTCTTCGTCTTTCCATGGAAGCAGAGGC 417
Query 421 GTTCCAAAAGGAGGTAATACTGCGAAATCGCCTCCTGTGGCGCCAAAGAAGAGCGGTTTG 480
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 418 GTTCCAAGAGGAGGTACTACTGTGAAATCGCCTCCTGTGGCGCCAAAGAAGAGCGGTTTG 477
Query 481 AACAGTAGCAGCACTTCTTC-AAAGAGCAAAAAGGAAGGCTCTGAAAATGTTAGGA-TAA 538
| |||||||||||||||||| ||| ||||||| |||||| ||||||||||||| | |||
Sbjct 478 AGCAGTAGCAGCACTTCTTCGAAA-AGCAAAAGGGAAGGTTCTGAAAATGTTACAAATAA 536
Query 539 AGAAAGCATCTGATAAAGAGATT---GCCTTGGATTCTGCTTCTATGTCGTCTGCTCAGG 595
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 537 -GAAAGCATCTGATAAAGAGATTAATGCCTTGGATTCTGCTTCTATGTCGTCTGCTCAGG 595
Query 596 AGGATCATCAAGAGGAGATTCTCAAGGTCGAGAGTGATCATTTACAAGTTTCTGATCATG 655
|||||||||||||||||||||| ||||| |||||||| ||| | |||||| ||||||||
Sbjct 596 AGGATCATCAAGAGGAGATTCTGAAGGTTGAGAGTGACCATGTGCAAGTTGCTGATCATA 655
Query 656 ATATAGAAGAACCAAAATATGAGAAAGAAGAGAAAGAGGTTCAAGAAAAGGTTGTCCAAG 715
||||||||||||||||| |||| ||| |||| |||||||| ||||||| |||||| ||||
Sbjct 656 ATATAGAAGAACCAAAAGATGAAAAACAAGATAAAGAGGTGCAAGAAACGGTTGTGCAAG 715
Query 716 CCAATGAATCCGTTGAAGAGAAGGCTGAGAGTAGTGGACCAACACCGGTTGCTTCTCCTG 775
||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||
Sbjct 716 CCAATGAATCCGTTGAAGAGAAGACTGGGAGTGGTGAACCAACACCGGTTGCTTCTCCTA 775
Query 776 TTGGGAAAGATTGCAATGCTGTCGTCGCAGAATTAGAAGAAAAATTGATCAAGAATGAAG 835
||||||||||||||||||||||| || |||| ||||||||||| ||||||| |||||||
Sbjct 776 TTGGGAAAGATTGCAATGCTGTCATCAAAGAACTAGAAGAAAAAATGATCAATAATGAAG 835
Query 836 ATGATATCGAAGAGAAAACAGAGGAAA-TGAAAGAACAAGACAATAACCAAGCCAACAAA 894
| || ||||||||||||| |||||||| | ||||| |||||||||||||||| |||||
Sbjct 836 AAGAAATCGAAGAGAAAATAGAGGAAACT-AAAGAGCAAGACAATAACCAAGATAACAAG 894
Query 895 AGTGAAGAAGAGGAAGACGTTAAGAAGAAGATTGATGAGAATGAGACACCAGAGAAGGTT 954
||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 895 GGTGAAGAAGAGGAAGACGTTAAGAAGAAGATCGACGAGAATGAGACACCGGAGAAGGTT 954
Query 955 GATACTgaaagcaaagaagttgaaagtgtcgaagagactacacaagaaaaagaagaagaa 1014
|||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 955 GATATTGAAAGCAAAAAAGTTGAAAGTGTTGAAGAAACTACACAAGAAAAAGAAGAAGAA 1014
Query 1015 gtgaaagaagaggggaaggagagggtggaagaggaggagaaggagaaggaaaaggttaaa 1074
| | | ||| ||||||| ||| || || ||||| | |||||||||||||||||
Sbjct 1015 G--A--G--GAG---AAGGAGAAAGTG-AA-AG-AGGAG--G-AGAAGGAAAAGGTTAAA 1059
Query 1075 gaagatgatcaaaaggagaaggtggaaga--agaag-agaaggaaaaggttaagggtgat 1131
||||||| ||| ||||||||| ||||| ||||| |||| ||||||||||||| ||
Sbjct 1060 GAAGATGG--AAA-GGAGAAGGTAGAAGAGGAGAAGGAGAAAGAAAAGGTTAAGG---AT 1113
Query 1132 gaggaaaaggagaaggttaaagaagaagaatcagcagagggaaagaagaaggaagtagtg 1191
||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1114 GAGGAGAAGGAGAAGGTTAAAGAAGAAGAATCAGGAGAGGGAAAGAAGAAAGAAGTAGTG 1173
Query 1192 aaagggaagaaggaaTCTCCATCAGCTTACAACGATGTAATAGCAAGTAAGATGCAAGAG 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 AAAGGGAAGAAGGAATCTCCATCAGCTTACAACGATGTAATAGCAAGTAAGATGCAAGAG 1233
Query 1252 AACCCGAGGAAGAACAAAGTTTTGGCTCTTGCTGGAGCTTTTCAAACCGTTATTGACTAT 1311
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1234 AACCCGAGGAAGAACAAAGTTTTGGCTCTAGCTGGAGCTTTTCAAACTGTTATTGACTAT 1293
Query 1312 GAAACTGCTGCATCTAAGTGA 1332
|||||||||||||||||||||
Sbjct 1294 GAAACTGCTGCATCTAAGTGA 1314
> Ahg940535 jgi|Araly1|940535|scaffold_601079.1
Length=1280
Score = 241 bits (130), Expect = 1e-62
Identities = 173/193 (90%), Gaps = 5/193 (3%)
Strand=Plus/Plus
Query 1144 aaggttaaagaagaagaatcagcaga-g--ggaa-agaagaaggaagtagtgaaagggaa 1199
|||| | ||| |||||||| | |||| | |||| | ||||||||||| ||| |||||||
Sbjct 1069 AAGGCTCAAGTAGAAGAATTACCAGAGGAAGGAACA-AAGAAGGAAGTGGTGCAAGGGAA 1127
Query 1200 gaaggaaTCTCCATCAGCTTACAACGATGTAATAGCAAGTAAGATGCAAGAGAACCCGAG 1259
||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1128 GAAGGAATCTCCAACAGCCTACAACGATGTAATAGCAAGTAAGATGCAAGAGAACTCGAA 1187
Query 1260 GAAGAACAAAGTTTTGGCTCTTGCTGGAGCTTTTCAAACCGTTATTGACTATGAAACTGC 1319
||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1188 GAAGAACAAGGTCTTGGCTCTTGCTGGAGCCTTTCAAACTGTTATTGACTATGAAACTGC 1247
Query 1320 TGCATCTAAGTGA 1332
|||||||||||||
Sbjct 1248 TGCATCTAAGTGA 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49826652519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5