BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G24890.1

Length=1123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942050 jgi|Araly1|942050|scaffold_602594.1                        732    0.0  


> Ahg942050 jgi|Araly1|942050|scaffold_602594.1
Length=490

 Score =  732 bits (396),  Expect = 0.0
 Identities = 437/455 (96%), Gaps = 9/455 (2%)
 Strand=Plus/Plus

Query  506  GGCTTCGAGGGTTAGCTTCAATGAGCTCTCTTGAAGATTCTCTACCCTCAAAGAGAGGGT  565
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  1    GGCTTCGAGGGTTAGCTTCAATGAGCTCTCTTGAAGATTCTCTTCCCTCAAAGAGAGGGT  60

Query  566  TATCGAATCATTACAAAGGGAAATCAAAATCATTTGGGAATTTAGGAGAGATTGGAAGTG  625
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TATCCAATCATTACAAAGGGAAATCAAAATCATTTGGGAATTTAGGAGAGATTGGAAGTG  120

Query  626  TTAAAGAAGTAGCGAAACAAGAGAATCCATTGAATAAAAGAAGAAGATTACAGATCTGTA  685
            ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  121  TTAAAGAAGTAGCAAAACAAGAGAATCCATTGAATAAAAGAAGAAGAGTACAGATCTGTA  180

Query  686  ATAAATTAGCAAGAAAATCGTTTTATTCATGGCAAAACCCTAAATCTATGCCTCTGTTAC  745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATAAATTAGCAAGAAAATCGTTTTATTCATGGCAAAACCCTAAATCTATGCCTCTGTTAC  240

Query  746  CAGTAAACgaagatgaagacgatgatgatgaagatgacgatgaagaagatctgaaatctg  805
            ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct  241  CAGTAAACGAAGATGAAGATGATGATGATGATGATGATGATGAAGAAGATCTGAAATCTG  300

Query  806  ggtttgatgagaaTAAATCATCGAGTGATGAAGAAGGAG----T-GA---A-GAAAGTTG  856
            |||||||||||||||||||||||||||||||||||||||    | ||   | ||||||||
Sbjct  301  GGTTTGATGAGAATAAATCATCGAGTGATGAAGAAGGAGGAGGTAGAGTGAAGAAAGTTG  360

Query  857  TTGTAAGGAAAGGATCTTTCAAGAACAGAGCTTATAAGTCTAGGAGTTGTTTTGCACTTT  916
            |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct  361  TTGTAAGGAAAGGATCTTTCAAGAACAGAGCTTACAAGTCTCGGAGTTGTTTTGCACTTT  420

Query  917  CAGATCTGATTGAGGAAGAAGATGATGATGATGAT  951
            |||||||||||||||||||||||||||||||||||
Sbjct  421  CAGATCTGATTGAGGAAGAAGATGATGATGATGAT  455



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41858962866


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5