BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24910.1
Length=1790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913562 jgi|Araly1|913562|Al_scaffold_0001_3816 276 5e-73
Ahg908167 jgi|Araly1|908167|Al_scaffold_0002_1248 276 5e-73
Ahg893976 jgi|Araly1|893976|Al_scaffold_0006_1972 274 2e-72
Ahg916534 jgi|Araly1|916534|Al_scaffold_0008_1285 267 3e-70
Ahg947464 jgi|Araly1|947464|scaffold_703693.1 165 1e-39
Ahg347161 jgi|Araly1|347161|fgenesh1_pg.C_scaffold_5000553 165 1e-39
Ahg895432 jgi|Araly1|895432|Al_scaffold_0006_3428 150 3e-35
> Ahg913562 jgi|Araly1|913562|Al_scaffold_0001_3816
Length=297
Score = 276 bits (149), Expect = 5e-73
Identities = 167/175 (95%), Gaps = 3/175 (2%)
Strand=Plus/Plus
Query 822 AGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCAGCCTCAATGGCTTCAC- 880
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 83 AGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCA-CCTCAATGGCTTCACA 141
Query 881 TGATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAGCTAGAGAGACA 940
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 142 T-ATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAACTAGAGAGGCA 200
Query 941 CATTGAGTCTTTGATATGGGAAACCGTTAAAGAAAGAGAAAGGGAATGTGTGGGA 995
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 201 TATTGAGTCTTTGATATGGGAAACTGTTAAGGAAAGAGAAAGGGAATGTGTGGGA 255
> Ahg908167 jgi|Araly1|908167|Al_scaffold_0002_1248
Length=306
Score = 276 bits (149), Expect = 5e-73
Identities = 167/175 (95%), Gaps = 3/175 (2%)
Strand=Plus/Plus
Query 822 AGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCAGCCTCAATGGCTTCAC- 880
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 83 AGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCA-CCTCAATGGGTTCACA 141
Query 881 TGATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAGCTAGAGAGACA 940
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 142 T-ATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAGCTAGAGAGGCA 200
Query 941 CATTGAGTCTTTGATATGGGAAACCGTTAAAGAAAGAGAAAGGGAATGTGTGGGA 995
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 201 TATTGAGTCTTTGATATGGGAAACTGTTAAGGAAAGAGAAAGGGAATGTGTGGGA 255
> Ahg893976 jgi|Araly1|893976|Al_scaffold_0006_1972
Length=1212
Score = 274 bits (148), Expect = 2e-72
Identities = 166/174 (95%), Gaps = 4/174 (2%)
Strand=Plus/Plus
Query 822 AGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCAGCCTCAATGGCTTCACT 881
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 80 AGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCA-CCTCAATGGCTT--CT 136
Query 882 GATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAGCTAGAGAGACAC 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 137 -ATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAGCTAGAGAGGCAT 195
Query 942 ATTGAGTCTTTGATATGGGAAACCGTTAAAGAAAGAGAAAGGGAATGTGTGGGA 995
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 196 ATTGAGTCTTTGATATGGGAAACTGTTAAGGAAAGAGAAAGGGAATGTGTGGGA 249
> Ahg916534 jgi|Araly1|916534|Al_scaffold_0008_1285
Length=189
Score = 267 bits (144), Expect = 3e-70
Identities = 164/173 (95%), Gaps = 3/173 (2%)
Strand=Plus/Plus
Query 824 ATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCAGCCTCAATGGCTTCAC-TG 882
||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
Sbjct 1 ATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCA-CCCCAATGGCTTCACAT- 58
Query 883 ATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAGCTAGAGAGACACA 942
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 59 ATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAACTAGAGAGGCATA 118
Query 943 TTGAGTCTTTGATATGGGAAACCGTTAAAGAAAGAGAAAGGGAATGTGTGGGA 995
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 119 TTGAGTCTTTGATATGGGAAACTGTTAAGGAAAGAGAAAGGGAATGTGTGGGA 171
> Ahg947464 jgi|Araly1|947464|scaffold_703693.1
Length=1176
Score = 165 bits (89), Expect = 1e-39
Identities = 155/182 (85%), Gaps = 23/182 (13%)
Strand=Plus/Plus
Query 814 CTAAGCTTAGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCAGCCTCAATG 873
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 66 CTAAGCTTAGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCA-CCTCAATG 124
Query 874 GCTTCACTGATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAGCTAG 933
| | ||| || |||||||||||||||||||||||||||||||
Sbjct 125 G-----C----------TTC---AC----AAGCATGGGAACGGGAAGATTGATGAGCTAG 162
Query 934 AGAGACACATTGAGTCTTTGATATGGGAAACCGTTAAAGAAAGAGAAAGGGAATGTGTGG 993
|||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 163 AGAGGCATATTGAGTCTTTGATATGGGAAACTGTTAAGGAAAGAGAAAGGGAATGTGTGG 222
Query 994 GA 995
||
Sbjct 223 GA 224
> Ahg347161 jgi|Araly1|347161|fgenesh1_pg.C_scaffold_5000553
Length=453
Score = 165 bits (89), Expect = 1e-39
Identities = 155/182 (85%), Gaps = 23/182 (13%)
Strand=Plus/Plus
Query 814 CTAAGCTTAGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCAGCCTCAATG 873
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 211 CTAAGCTTAGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCA-CCTCAATG 269
Query 874 GCTTCACTGATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAGCTAG 933
| | ||| || |||||||||||||||||||||||||||||||
Sbjct 270 G-----C----------TTC---AC----AAGCATGGGAACGGGAAGATTGATGAGCTAG 307
Query 934 AGAGACACATTGAGTCTTTGATATGGGAAACCGTTAAAGAAAGAGAAAGGGAATGTGTGG 993
|||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 308 AGAGGCATATTGAGTCTTTGATATGGGAAACTGTTAAGGAAAGAGAAAGGGAATGTGTGG 367
Query 994 GA 995
||
Sbjct 368 GA 369
> Ahg895432 jgi|Araly1|895432|Al_scaffold_0006_3428
Length=213
Score = 150 bits (81), Expect = 3e-35
Identities = 91/96 (95%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 900 AAGAAGCATGGGAACGGGAAGATTGATGAGCTAGAGAGACACATTGAGTCTTTGATATGG 959
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 100 AAGAAGCATGGGAACGGGAAGATTGATGAGCTAGAGAGGCATATTGAGTCTTTGATATGG 159
Query 960 GAAACCGTTAAAGAAAGAGAAAGGGAATGTGTGGGA 995
||||| ||||| |||||||||| |||||||||||||
Sbjct 160 GAAACTGTTAAGGAAAGAGAAAAGGAATGTGTGGGA 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67191192180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5