BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G24920.1

Length=611
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489352 jgi|Araly1|489352|fgenesh2_kg.6__2486__AT5G24920.1         920    0.0  


> Ahg489352 jgi|Araly1|489352|fgenesh2_kg.6__2486__AT5G24920.1
Length=604

 Score =  920 bits (498),  Expect = 0.0
 Identities = 575/611 (94%), Gaps = 10/611 (2%)
 Strand=Plus/Plus

Query  1    ATGAGGCAATTTCCAAGCATAAGAGGAAACATAAATGAGAAGATGATGACAACAATGGTG  60
            ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct  1    ATGAGGCAATTTCCAAGCATAAGAGGAAACATAGATGAGAAGATGATGACAAGAATGGTG  60

Query  61   GAGTCTCAGACACGGTCTCCGTGGCGTACACCGGTTCCTTACCTATTCGGTGGTTTAGCC  120
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  61   GAGTCTCAGACACGGTCTCCGTGGCATACACCGGTTCCTTACCTATTCGGTGGTTTAGCC  120

Query  121  GCCATGCTTGGACTCATAGCCTTTGCTCTCTTGTTGCTCGCCTGCTCCTACTGGAGGCTC  180
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct  121  GCCATGCTTGGACTCATAGCATTTGCTCTCTTGTTGCTCGCTTGCTCCTACTGGAAGCTC  180

Query  181  TCGCGGCAGACAGAAGATGAAGAGAAACAGACGGAGTCCGGTGAGAAAGTGGTGGCTAAG  240
            ||||||  ||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct  181  TCGCGGGGGACAGAAGACGAAGAGAAACAGAAGGAGTCCGGTGAGAAAGTGGTGGCTAAG  240

Query  241  GCTTTTGAGGAGAAGATTCTTGTGATCATGGCTGGACAAAACAACCCTACCTTCTTAGCC  300
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  241  GTTTTTGAGGAGAAGATTCTTGTGATCATGGCTGGACAAAACAACCCTACCTTCTTGGCC  300

Query  301  ACTCCGGTCGCGGCCAAGATTTGCCTGGATTGTGTTAATATGGAGAAGAAAGAAGGACAA  360
            ||||| ||||| ||||||||||||||||| ||||| |||||||||||||||| ||| |||
Sbjct  301  ACTCCAGTCGCCGCCAAGATTTGCCTGGAATGTGTAAATATGGAGAAGAAAGTAGGGCAA  360

Query  361  AATGGGGAATCTAAAGTAACAGAAGAAAACCACTGACTACTGAGCTCTGTTCTCAAGAGT  420
            ||||||||||||| || |||||||| |||  ||   ||| ||||||||||||||||||||
Sbjct  361  AATGGGGAATCTACAGAAACAGAAG-AAA--AC---CTA-TGAGCTCTGTTCTCAAGAGT  413

Query  421  GTACttttttggattctctgtttttgtcggtttgttt-tttgtttgttggggaagtagtt  479
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  414  GTACTTTTTTGGATTCTCTGTTTTTGTCGGTTTGTTTGTTTGTTTGTTGGGGAAGTAGTT  473

Query  480  ttcctctgtttttgtCGACCTTGAGATTGTAAATTTTCATTAGAGTAGTAAATGTGAAC-  538
            ||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct  474  TTCCTCTGTTTTAATCGACCTTGAGATTGTAAATCTTCATTAGAGTAGTAAATGTGAACC  533

Query  539  AAAAAAGTTGAGAAA-TTTCGGGTTTCTATGTATAAATGTTGGTATATGAATATATTTTG  597
            ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  534  AAAAAAGTTGACAAAGTTTCGGGGTTCTATGTATAAATGTTGGTATATGAATATATTTTG  593

Query  598  CTAAATTAAAG  608
            ||||||| |||
Sbjct  594  CTAAATTGAAG  604



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22340029362


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5