BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24940.1
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489354 jgi|Araly1|489354|fgenesh2_kg.6__2488__AT5G24940.1 1580 0.0
Ahg487908 jgi|Araly1|487908|fgenesh2_kg.6__1042__AT5G10740.1 998 0.0
> Ahg489354 jgi|Araly1|489354|fgenesh2_kg.6__2488__AT5G24940.1
Length=1341
Score = 1580 bits (855), Expect = 0.0
Identities = 968/1023 (95%), Gaps = 5/1023 (0%)
Strand=Plus/Plus
Query 1 ATGGGATATATGGACTTGGCGTTATCTTATTCGAATCAAATGCGGATTGTTGAAGCTCCC 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGATATATGGACTTGGCGTTATCGTATTCGAATCAAATGCGGATTGTTGAAGCTCCC 60
Query 61 GCAAGCGGAGGTGGTCTCAGTCAGAATGGAAAATTTAGCTATGGATATGCAAGCTCAGCT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GCAAGCGGAGGTGGTCTCAGTCAGAATGGAAAATTCAGCTATGGATATGCAAGCTCAGCT 120
Query 121 GGAAAAAGGTCATCTATGGAAGACTTTTTTGAGACAAGGATCGACGGTATCGATGGAGAA 180
|| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGGAAGAGATCATCTATGGAAGACTTTTTTGAGACTAGGATCGACGGTATCGATGGAGAA 180
Query 181 ATCGTTGGTCTATTTGGAGTCTTTGATGGTCATGGTGGATCCAGAGCAGCTGAGTATGTG 240
||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 181 ATCGTCGGTCTATTTGGAGTCTTTGATGGACATGGTGGAGCAAGAGCAGCTGAGTATGTG 240
Query 241 AAGCGTCACCTTTTCAGCAATCTTATTACTCATCCTAAGTTCATCTCTGACACCAAATCT 300
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 AAGCGTCATCTTTTCAGCAATCTTATTACTCATCCTAAGTTCATCTCTGATACCAAATCT 300
Query 301 GCAATAGCTGATGCCTATACTCATACAGACTCTGAACTTCTCAAGTCAGAAAATAGTCAT 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCAATAGCTGATGCATATACTCATACAGACTCTGAACTTCTCAAGTCAGAAAATAGTCAC 360
Query 361 ACTAGAGATGCTGGTTCAACTGCTTCCACAGCTATTCTCGTTGGTGATCGTTTACTTGTT 420
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ACTAGAGATGCTGGTTCTACTGCTTCCACAGCTATTCTTGTTGGTGATCGTTTACTTGTT 420
Query 421 GCTAATGTTGGTGATTCCAGAGCTGTTATATGTCGTGGCGGAAATGCATTTGCTGTTTCA 480
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 421 GCTAATGTTGGTGATTCCAGAGCTGTTATATGTCGAGGCGGAAATGCCTTTGCTGTGTCA 480
Query 481 AGAGACCATAAACCTGACCAAAGTGATGAGCGTGAACGGATTGAGAATGCTGGTGGTTTT 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 AGAGACCATAAACCTGACCAAAGTGATGAACGTGAACGGATTGAGAATGCTGGTGGTTTT 540
Query 541 GTGATGTGGGCAGGGACTTGGAGAGTTGGAGGAGTTCTTGCAGTTTCCCGCGCGTTTGGT 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 541 GTGATGTGGGCAGGGACTTGGAGAGTTGGAGGAGTTCTTGCAGTTTCTCGCGCCTTTGGT 600
Query 601 GATCGATTGCTTAAACAATATGTTGTTGCTGATCCAGAAATTCAGGAAGAGAAGATTGAT 660
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GATCGATTGCTGAAACAGTATGTTGTTGCTGATCCAGAAATTCAGGAAGAGAAGATTGAT 660
Query 661 GATTCTCTTGAGTTTCTGATTCTTGCCAGCGATGGACTATGGGATGTTTTCTCCAATGAG 720
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GATTCTCTTGAATTTCTGATTCTTGCTAGCGATGGACTATGGGATGTTTTCTCCAATGAG 720
Query 721 GAAGCAGTTGCAGTAGTAAAAGAAGTTGAAGATCCGGAAGAGTCCACCAAGAAACTTGTG 780
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAAGCGGTTGCAGTGGTGAAAGAAGTTGAAGATCCGGAAGAGTCCACCAAGAAACTTGTG 780
Query 781 GGAGAAGCAATTAAAAGAGGAAGTGCAGACAATATTACATGTGTAGTTGTACGTTTCTTG 840
|| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 GGCGAAGCAATTCGGAGAGGAAGTGCAGACAATATTACATGTGTAGTCGTACGTTTCTTG 840
Query 841 GAGAGCAAGTCAGCTAACAACAACGGTTCCAGCTCATCCGAGGAAGCAAATCAAGTGCCA 900
||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 841 GAGAGCAAGACTGCTAACAACAATGGTTCCAGCTCATCCGAGGAAGCAAATCAAGTTCAA 900
Query 901 ACCGCTGTTAGAAATGACTCAGACCACAAGATCTCAGCCAAAGAAACCAATCAAGACCAT 960
||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 901 ACCGCTGTTAGAAATGACTCAGACCACAAGAACTTAACCAAAGAAACCAATCAAGACCAT 960
Query 961 ACCACAGTAAACA-AGGACTTGGAC--C-GCAACACTGACAGTCAAAGCCTGAACCAAAA 1016
| ||||| ||| || |||||||| | ||||| |||||| | ||| ||||||||||||
Sbjct 961 ATTGCAGTACACAGAG-ACTTGGACTGCAGCAACGCTGACAATGAAAACCTGAACCAAAA 1019
Query 1017 GCC 1019
|||
Sbjct 1020 GCC 1022
Score = 220 bits (119), Expect = 2e-56
Identities = 247/304 (81%), Gaps = 28/304 (9%)
Strand=Plus/Plus
Query 1047 GAACCAAAAACCAATCGCGACTACAGCAACAGGACACAGCGTTTCTTCAGAACAGAGTGG 1106
||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct 1011 GAACCAAAAGCCAATCGCGGTTACAGCAGCAGGACGCAGCGTTTCTTCAGAACAGAGTGG 1070
Query 1107 TTTAACCGGGGAAAAGAGTCAAATGCCAATCAAAATTCGCAGCGACTCAGAGC-CTAAGA 1165
|||| ||| |||||||| ||||||||||||| ||||||||||| |||||| | | ||||
Sbjct 1071 TTTAGCCGAGGAAAAGAATCAAATGCCAATCGCAATTCGCAGCGGCTCAGATCTC-AAGA 1129
Query 1166 G-T--TCAGCCAAGGTACCTAATCAAACGCAAAGCACAGTACACAACGACTTG-GACAGT 1221
| | ||| ||||||||||||||||| | ||| ||||||||||||||| || ||||||
Sbjct 1130 GCTCATCAACCAAGGTACCTAATCAAGGGAAAATCACAGTACACAACGA-TTCCGACAGT 1188
Query 1222 AGCACTGCGAA---GAAGCCGGC--C-GCAACA---------------GAACAGAGCGGA 1260
|||| |||||| |||||||| | |||||| ||||||||||||
Sbjct 1189 AGCATTGCGAATCAGAAGCCGGTAGCAGCAACACACACCTCTTCCTTAGAACAGAGCGGA 1248
Query 1261 TCAACGGGTGAAAGGAATCGAAAACCAATCAAAGTTCATAGTGATTCCGCCGCAAGAAAG 1320
||||| |||||| |||||||||| ||||| |||||||||| |||||| ||||||| | |
Sbjct 1249 TCAACCAGTGAAAAGAATCGAAAATCAATCCAAGTTCATAGCGATTCCCCCGCAAGCAGG 1308
Query 1321 ACAA 1324
||||
Sbjct 1309 ACAA 1312
> Ahg487908 jgi|Araly1|487908|fgenesh2_kg.6__1042__AT5G10740.1
Length=1526
Score = 998 bits (540), Expect = 0.0
Identities = 758/863 (88%), Gaps = 16/863 (2%)
Strand=Plus/Plus
Query 1 ATGGGATATATGGACTTGGCGTTATCTTATTCGAATCAAATGCGGATTGTTGAAGCTCCC 60
||||||||| |||||||||| || || ||||| || || || || |||||| |||||
Sbjct 216 ATGGGATATCTGGACTTGGCCTTGTCGTATTCCAACCAGCCGCAGACTGTTGACGCTCCA 275
Query 61 GCAAGCGGAGGTGGTCTCAGTCAGAATGGAAAATTTAGCTATGGATATGCAAGCTCAGCT 120
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 276 GCGAGCGGAGGAGGTCTCAGCCAGAATGGAAAATTTAGCTATGGATATGCAAGCTCAGCT 335
Query 121 GGAAAAAGGTCATCTATGGAAGACTTTTTTGAGACAAGGATCGACGGTATCGATGGAGAA 180
|| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 336 GGGAAGAGATCATCTATGGAAGACTTTTTTGAGACTAGGATCGACGGTATCGATGGAGAA 395
Query 181 ATCGTTGGTCTATTTGGAGTCTTTGATGGTCATGGTGGATCCAGAGCAGCTGAGTATGTG 240
||||||||||| |||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 396 ATCGTTGGTCTCTTTGGAGTTTTTGATGGTCATGGTGGAGCCAGAGCAGCTGAGTACGTG 455
Query 241 AAGCGTCACCTTTTCAGCAATCTTATTACTCATCCTAAGTTCATCTCTGACACCAAATCT 300
|||||||| |||||||| ||||| || || || || ||||| |||||||||||||||||
Sbjct 456 AAGCGTCATCTTTTCAGTAATCTCATCACCCACCCAAAGTTTATCTCTGACACCAAATCA 515
Query 301 GCAATAGCTGATGCCTATA-CTCATACAGACTCTGAACTTCTCAAGTCAGAAAATAGTCA 359
|| ||| |||||||||||| | ||||||||||| |||||||| |||||||||||||||||
Sbjct 516 GCTATAACTGATGCCTATAAC-CATACAGACTCAGAACTTCTTAAGTCAGAAAATAGTCA 574
Query 360 TACTAGAGATGCTGGTTCAACTGCTTCCACAGCTATTCTCGTTGGTGATCGTTTACTTGT 419
| |||||| |||||||| ||||| || ||||||||||| |||||||| || ||| ||||
Sbjct 575 CAATAGAGACGCTGGTTCGACTGCGTCTACAGCTATTCTTGTTGGTGACCGCTTAGTTGT 634
Query 420 TGCTAATGTTGGTGATTCCAGAGCTGTTAT-ATGTC-GTGGCGGAAATGC-ATTTGCTGT 476
||| |||||||||||||| ||||||||||| | | | | |||||||| || ||| |||||
Sbjct 635 TGCAAATGTTGGTGATTCAAGAGCTGTTATCA-G-CAGAGGCGGAAAAGCCATT-GCTGT 691
Query 477 TTCAAGAGACCATAAACCTGACCAAAGTGATGAGCGTGAACGGATTGAGAATGCTGGTGG 536
||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 692 GTCAAGGGACCATAAACCTGACCAAAGTGATGAACGTGAAAGGATTGAGAATGCTGGTGG 751
Query 537 TTTTGTGATGTGGGCAGGGACTTGGAGAGTTGGAGGAGTTCTTGCAGTTTCCCGCGCGTT 596
||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||
Sbjct 752 ATTTGTGATGTGGGCAGGAACTTGGAGGGTTGGAGGAGTTCTTGCAGTTTCTCGTGCGTT 811
Query 597 TGGTGATCGA-TTGCTTAAACAATATGTTGTTGCTGATCCAGAAATTCAGGAAGAGAAGA 655
||||||||| || || || |||||||||||||||||||||||||| |||||||| ||||
Sbjct 812 TGGTGATCGGCTT-CTGAAGCAATATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGA 870
Query 656 TTGATGATTCTCTTGAGTTTCTGATTCTTGCCAGCGATGGACTATGGGATGTTTTCTCCA 715
|||||||||| ||||||||| |||| || || || |||||||| |||||||||||||| |
Sbjct 871 TTGATGATTCCCTTGAGTTTTTGATCCTAGCAAGTGATGGACTGTGGGATGTTTTCTCTA 930
Query 716 ATGAGGAAGCAGTTGCAGTAGTAAAAGAAGTTGAAGATCCGGAAGAGTCCACC-AAGAAA 774
|||||| |||||||||| | || || |||||||||||||| || ||||| | | |||| |
Sbjct 931 ATGAGGCAGCAGTTGCAATGGTTAAGGAAGTTGAAGATCCAGAGGAGTC-AGCGAAGACA 989
Query 775 CTTGTGGGAGAAGCAATTAAA-AGAGGAAGTGCAGACAATATTACATGTGTAGTTGTACG 833
|||||||| |||||||| ||| ||||||||||||||||| || |||||||| || || ||
Sbjct 990 CTTGTGGGTGAAGCAAT-AAAGAGAGGAAGTGCAGACAACATCACATGTGTTGTCGTTCG 1048
Query 834 TTTCTTGGAGA-GCAAGTCAGCT 855
||||||||||| | ||| |||||
Sbjct 1049 TTTCTTGGAGAAG-AAGACAGCT 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284127523
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5