BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24950.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894405 jgi|Araly1|894405|Al_scaffold_0006_2401 2095 0.0
Ahg481994 jgi|Araly1|481994|fgenesh2_kg.4__1054__AT2G30770.1 706 0.0
> Ahg894405 jgi|Araly1|894405|Al_scaffold_0006_2401
Length=1491
Score = 2095 bits (1134), Expect = 0.0
Identities = 1379/1498 (92%), Gaps = 14/1498 (1%)
Strand=Plus/Plus
Query 1 ATGGAAATCATAATCATCTCTCTCTGCCTAGCAACAATCCTAGCCTTTCTTCTCCTAAAA 60
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAATGATAATCATCTCTGTCTGCCTAGCAACAATCCTAGCCTTTCTTCTCCTAAAA 60
Query 61 CCACTTCTGAATCGAACCGTTGCCAAAGACAACCTACCACCGTCTCCGTGGCGAGTTCCG 120
||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||
Sbjct 61 CCACTTCTGAATCGAACCGCTGCCAAAGTCAATCAACCACCGTCTCCGTGGCGAGTTCCG 120
Query 121 GTAATCGGAAACCTCCACCAGCTAAGCCTCCACCCTCACCGCTCCCTTCGTTCCCTCAGC 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 GTAATCGGAAACCTCCACCAGCTAAGCCTCCACACTCACCGCTCCCTTCGTTCCCTCAGC 180
Query 181 CACCGCTACGGGCCACTCATGCTCCTTCATTTTGGCCGTGTCCCGATCCTCGTAGTCTCT 240
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 181 CACCGCTACGGGCCACTCATGCTCCTTCATTTTGGGCACGTCCCGATCCTCGTAGTCTCC 240
Query 241 TCCTCTGACGTAGCTCATGACCTCATGAAAACACACGACCTTAAGGTTGCGAACCGCCCG 300
|||||||||||||||||||||||| | |||||| |||||||||||||||| ||||| |||
Sbjct 241 TCCTCTGACGTAGCTCATGACCTCCTCAAAACATACGACCTTAAGGTTGCAAACCGACCG 300
Query 301 CGA-TTAAAAGTGATTGAA-ACAA-TCCTCAACGGTGGGAGAGAAGTGGTTTTTTCCCCT 357
| | ||||||||| | || | || | | |||||||| ||||||||| ||||||||||
Sbjct 301 C-AGTTAAAAGTG-GTCAATA-AACTTTTTAACGGTGGTCGAGAAGTGGCTTTTTCCCCT 357
Query 358 TACGGAGACTATTGGAGGCAGATTAAGACTGTATGCGTCGTCCATCTACTCAATAAGAAA 417
|| ||||| |||||||||||||| |||| ||||||| || |||||||||||||||| |||
Sbjct 358 TATGGAGAATATTGGAGGCAGATGAAGAGTGTATGCATCATCCATCTACTCAATAAAAAA 417
Query 418 ATGGTACAATCCTTTGCAAAAGTAAGAGAAGAAGAGAGAAGTGTAATGATGGAGAAGGTC 477
|||||||| || |||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 418 ATGGTACAGTCTTTTGAAAAAGTAAGAGAAGAAGAGATAAGTGTAATGATGGAGAGGGTG 477
Query 478 GAGAAAGCAAGTTCCGATTCTTCACCACTAAATCTAAGCAAGCTTCTTATAACACTTACA 537
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 478 GAGAAAGCAAGTTCCGATTCTTCACCACTAAATCTAAGCGAGCTTCTTATAACACTTACA 537
Query 538 AGCGATGTGGCAAGTAGAGTTTCTTTTGGGAA-AAAACATAGCAACGAGGCAAGCATGAG 596
||||||||| ||||||||||||||||| |||| ||||||||||||||||| |||||||||
Sbjct 538 AGCGATGTGACAAGTAGAGTTTCTTTT-GGAAGAAAACATAGCAACGAGGAAAGCATGAG 596
Query 597 CGATTTCAAGAATCAAGTGAGAAAAATCACT-GAGCTGGTAGGCGGATTTCCGGTTAGCG 655
|||||||||||| |||||||| ||||||| | ||||||||||||| || ||| |||||||
Sbjct 597 CGATTTCAAGAACCAAGTGAGGAAAATCA-TGGAGCTGGTAGGCGAATATCCTGTTAGCG 655
Query 656 AATATATCCCGTGTTTGGCGTGGATAGATCAAATTCGTGGTCTGTATAATAGAGCGGAGG 715
|||||||||| |||||||||||||| ||| |||| ||||||||| || ||| | |||| |
Sbjct 656 AATATATCCCATGTTTGGCGTGGATCGATAAAATACGTGGTCTGGATGATAAAACGGAAG 715
Query 716 AAGTGAGTAAAATTTTTGGAGATCTTATGGATAAAGTGGTGCAAGAGCATTTAGATGCTA 775
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 716 AAGTGAGTAAAAATTTTGGAGATCTTATGGACAAAGTGGTGCAAGAGCATTTAGATTCCA 775
Query 776 CAA-ATAAACCAACAAAGGATTTCGTCGATATATTGTTGTCCTTTGAAAGACAGAGTAAA 834
|| |||||||||||| |||||| |||||||||||| | ||||| |||||||||| ||||
Sbjct 776 -AAGATAAACCAACAATGGATTTTGTCGATATATTGCTATCCTTCGAAAGACAGAATAAA 834
Query 835 GATGGAATAGAAGTTCGACGAAGCGACATTAAGTTCATAATCTTGGATATATTTTTAGGA 894
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 835 GATGGAATAGAAATTCGACGAAGCGACATTAAGTTCATAATCTTGGATATGTTTTTAGGA 894
Query 895 GGAACGACAACAACTAACTCACTACTAGAATGGACAATGACGGAGCTTATTAGACATCCG 954
|||||| | |||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 895 GGAACGGCGACAACTTACGCACTATTAGAATGGACAATGACGGAGCTTATTAGACATCCG 954
Query 955 GAATGCATGAAGAAACTCCAAGACGAGATTCGCGGCGATGCGACAAACCTT-ACTATATA 1013
|||||||||||||||||||||||||||||| |||| || | ||||| ||| || |||||
Sbjct 955 GAATGCATGAAGAAACTCCAAGACGAGATTTGCGGTGACGAAACAAAGCTTAAC-ATATA 1013
Query 1014 TAGATCACATGAAGAAGTTGAAGATATGAAGTACTTAAAAGCGGTTATTAAGGAGGGTCT 1073
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1014 TAGATCACAAGAAGAAGTTGAAGATATGAAGTACTTAAAAGCGGTTATAAAGGAGGGGCT 1073
Query 1074 TCGGTTACATCCCCCTTTTCCATTACTAGTACTAAGACTATTGACTCAAGATGTCAAATT 1133
|||||| |||| |||||||||||||||||| | ||| ||| ||||| ||||||||||| |
Sbjct 1074 TCGGTTGCATCTCCCTTTTCCATTACTAGTTCCAAGGCTACTGACTGAAGATGTCAAACT 1133
Query 1134 AAAAGGATATGACATAGCTGCAGGCACACAGGTAATAACCAATGCTTGGGCTATTCAAAG 1193
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1134 AAAAGGATATGACATAGCTGCAGGCACACAGGTAATAATCAATGCTTGGGCTATTCAACG 1193
Query 1194 AGACATTGTGACATGGGGGATAGATGCAGAAGAATTTAGGCCAGAGAGACACTTAGATTC 1253
||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1194 AGACACTGTGACATGGGGGATGGATGCAGAAGAGTTTAGGCCAGAGAGGCACTTAGATTC 1253
Query 1254 ACCTCTGGACTTTCGAGGAACAAATTTCGAATACATTCCATTTGGATCTGGAAGAAGGAT 1313
|||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1254 ACCTTTGGACTTTCGGGGAACTAATTTCGAATACATTCCATTTGGATCTGGGAGAAGGAT 1313
Query 1314 TTGTCCTGGAATTGGATTTGCTATGGCTTTGGTTGAGGTGACACTAGCCAACCTTGTGAA 1373
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TTGTCCTGGAATCGGATTTGCTATGGCTTTGGTTGAGGTGACACTAGCCAACCTTGTGAA 1373
Query 1374 CCGATTTAACTGGAGAATGGATGCTCGGCTTTCGGGGGATGAATATGATCTAGCTGAAGC 1433
||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 1374 CCGATTTAACTGGAGAATGGATGTTCGGTTTTCAGGGGATGAATATGATCTAGCTGAAGC 1433
Query 1434 AACGGGAATCGATGTTTGCCGCAAATTTCCTCTTATTGTATTTCCATCTAATGCCTAA 1491
| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1434 ACCGGGAATCGATGTTTGCCGCAAATTTCCTCTTATTGTCTTTCCATCTAATGCTTAA 1491
> Ahg481994 jgi|Araly1|481994|fgenesh2_kg.4__1054__AT2G30770.1
Length=1545
Score = 706 bits (382), Expect = 0.0
Identities = 1102/1438 (77%), Gaps = 95/1438 (7%)
Strand=Plus/Plus
Query 91 AACCTACCACCGTCTCCGTGGCGAGTTCCGGTAATCGGAAACCTCCACCAGCTAAGCCTC 150
|||| |||||| ||||| |||||| ||||||| || ||||||||||||||||| ||||||
Sbjct 117 AACCGACCACCATCTCCATGGCGACTTCCGGTGATTGGAAACCTCCACCAGCTCAGCCTC 176
Query 151 CACCCTCACCGCTCCCTTCGTTCCCTCAGCCACCGCTACGGGCCACTCATGCTCCTTCAT 210
||||||||||| ||||| || |||||||||| | | ||||| || |||||||||||||||
Sbjct 177 CACCCTCACCGTTCCCTCCGGTCCCTCAGCCTCAGGTACGGACCTCTCATGCTCCTTCAT 236
Query 211 TTTGGCCGTGTCCCGATCCTCGTAGTCTCTTCCTCTGACGTAGCTCATGACCTCAT-GAA 269
|||||||||||||| || ||||||||||| ||| ||| | |||||| || | || |||
Sbjct 237 TTTGGCCGTGTCCCCATACTCGTAGTCTCCTCCGGTGAAGCAGCTCAAGAGGT-ATTGAA 295
Query 270 AACACACGACCTTAAGGTTGCGAACCGCCCGCGATTAAAAGT-GAT--TGAAACAATCCT 326
|||||| || | |||| |||||||||||||| ||| ||||| | | || | | |
Sbjct 296 AACACATGATCATAAGTTTGCGAACCGCCCGAGATCAAAAGCCGTTCGTGGG-CT-TA-T 352
Query 327 CAACGGTGGGAGAGAAGTGGTTTTTTC-CCCTTACGGAGACTATTGGAGGCAGATTAAGA 385
|| |||||| | || ||||| ||| | |||| | ||||| |||||||| ||||| ||||
Sbjct 353 GAATGGTGGGCGTGATGTGGTGTTTGCTCCCT-ATGGAGAATATTGGAGACAGATGAAGA 411
Query 386 CTGTATGCGT-CGTCCATCTACTCAATAAGAAAATGGTACAATCCTTTGCAAAAG-TAAG 443
||||||| | | || |||| |||| || |||||||| ||||||||| | ||| ||||
Sbjct 412 GTGTATGCATTC-TCAATCTGCTCACCAACAAAATGGTTGAATCCTTTG-AGAAGGTAAG 469
Query 444 AGAAGAAGAGAG-AAGTGTAATGATGGAGAAGGTCGAGAAAGCAAGTTCCGATTCTTCAC 502
|||||||||| | || || ||||||||||||| | ||||||||||||| |||||||
Sbjct 470 AGAAGAAGAG-GTAACTGCAATGATGGAGAAGCTGGAGAAAGCAAGTTGTTCTTCTTCAT 528
Query 503 CACTAAATCTAAGC-AAG-CTTCTTATAACACTTAC-AAGCGATGTGGCAAGTAGAGTTT 559
|| |||||| || || ||| | || || || || ||||||||| | ||||| |||
Sbjct 529 CAGAAAATCTGAGTGAAATCTT-T-ATTACTCT-ACCAAGCGATGTTACGAGTAGGGTTG 585
Query 560 CTTTTGGGAA-AAAACATAGCAACGAGGCAA--GCATGAGCGAT-TTCAAGAATCAAGTG 615
| || ||||| |||||||||| | || | || ||| | | ||| || ||||| | ||||
Sbjct 586 CCTT-GGGAAGAAAACATAGCGAGGACGAAACCGCAAG-G-GATCTT-AAGAAGCGAGTG 641
Query 616 AGAAAAATCACTG-AGCTGGTAGGCGGATTTCCGGTTAGCG-AATATATCCCG-TGTTTG 672
|| | |||| || |||| |||||| | |||| | | | | ||||| |||| | ||||
Sbjct 642 AGGCAGATCA-TGGAGCTTTTAGGCG-AGTTCCCGATCGGGGAATATGTCCCCAT-TTTG 698
Query 673 GCG-TGGATAGATCAAATTCGTGGTCTGTATAATAGAGCGGA-GGAAGTGAGTAAAATTT 730
| | ||||||||| || |||||| | |||||| || | |||||||||| |
Sbjct 699 G-GATGGATAGATGGGATCCGTGGTTTCAATAATA-AGATTAAGGAAGTGAGTCGCGGGT 756
Query 731 TTGGAGATCTTATGGATAAAGTGGTGCAAGAGCATTTAGATGCT-ACAAATAAACCAA-C 788
|| | ||||||||||| |||||||||||||| |||||||| || ||||| | | || |
Sbjct 757 TTAGCGATCTTATGGACAAAGTGGTGCAAGAACATTTAGAGGCGGACAAACATA--AAGC 814
Query 789 AAAGGATTTCGTCGATATATTGTTGTCCTTTGAAA--GACAGAGTAA-AGATGGAATAGA 845
||||||||| ||||||||||| || | |||| |||| || || | ||||| | |
Sbjct 815 ---GGATTTCGTGGATATATTGTTATCAATCGAAAAAGACA-AG-AATA-ATGGATTCCA 868
Query 846 AGTTCGACGA-AGCGACATTAAGTTCATAATCTTGGATATATTTTTAGGAGGAACGACAA 904
||||| | || | |||||| || || || ||||||||||| ||| ||||||||||| |||
Sbjct 869 AGTTCAAAGAGA-CGACATCAAATTTATGATCTTGGATATGTTTATAGGAGGAACGTCAA 927
Query 905 CAACTA--ACTCACTACTAGAATGGACAATGACGGAGCTTATTAGACA-TCCGGA-ATGC 960
||||| |||| |||||||||||||||||||||| || || ||| | ||| | | |
Sbjct 928 CAACTTCGACTC--TACTAGAATGGACAATGACGGAACTGATCAGA-AGTCCAAAGA-GT 983
Query 961 ATGAAGAAACTCCAAGACGAGATTCG--CGGCGAT--G-CGACAAACCTTACTATATATA 1015
|||||||| ||||||||||||||||| | | || | | ||| || | ||| |||
Sbjct 984 ATGAAGAATCTCCAAGACGAGATTCGGTCAACCATTAGGCCACATGG-TT-C-ATACATA 1040
Query 1016 GATCACATGAAGAAGTTGAAGATATGAAGTACTTAAAAGCGGTTATTAAGGAGG-GTCTT 1074
| | | ||||||||||| ||||||| ||||| ||||| || ||||| |||| | |||
Sbjct 1041 AAAGAAA--AAGAAGTTGAAAATATGAAATACTTGAAAGCCGTGATTAAAGAGGTG-CTT 1097
Query 1075 CGGTTACATCCCCCTTTTCCATT-ACTAGTACTAAGACTATTGACTCAAGATGTCAAATT 1133
||||| ||||| || ||||| | | || | | ||||| || | | ||||||||||| |
Sbjct 1098 CGGTTGCATCCTTCTCTTCCAATGA-TACTTCCCAGACTCTTAAGTGAAGATGTCAAAGT 1156
Query 1134 AAAAGGATATGACATAGCTGCAGGCACACAGGTAATAACCAATGCTTGGGCTATTCAAAG 1193
||| |||||| ||||||| ||||| ||| |||| || | |||||||||||| || ||| |
Sbjct 1157 AAAGGGATATAACATAGCCGCAGGGACAGAGGTGATCATCAATGCTTGGGCGATCCAACG 1216
Query 1194 AGACATTGTGACATGGGGGATAG-ATGCAGAAGAATTTAGGCCAGAGAGACACTTAGATT 1252
||||| | || |||||| | | |||| |||||||| | || || |||||||||||||
Sbjct 1217 AGACACCGCGATATGGGG-ACCGGATGCTGAAGAATTCAAACCGGAAAGACACTTAGATT 1275
Query 1253 CACCTCTGGACTT-TCGA-GG-AACAAATTTCGAA-TACATTCCATTTGGATCTGGAAGA 1308
|| || |||| || || | || || |||| | ||| ||||||||||| || || || |||
Sbjct 1276 CAGCTTTGGA-TTATC-ACGGGAA-AAATCT-GAACTACATTCCATTCGGTTCAGGGAGA 1331
Query 1309 AGGATTTGTCCTGGAATTGGAT-TTGCTATGGCTTTGGTTGAGGTGACACTAGCCAACCT 1367
||||||||||| || || || ||||| ||| ||||| ||||||||| | ||||||||
Sbjct 1332 AGGATTTGTCCCGGGATAA-ATCTTGCTTTGGGTTTGGCAGAGGTGACAGTGGCCAACCT 1390
Query 1368 TGT-GAACCGATTTAACTGGA-GAATGGATGCTCGG-CTTTCGGGGGATGAATATGATCT 1424
||| | ||||||| |||||| | | || ||| || | |||||| || ||||||
Sbjct 1391 TGTAGG-CCGATTTGACTGGAAGG-TAGAGGCT-GGACCAAATGGGGATCAACCTGATCT 1447
Query 1425 AGCTGAAGCAACGGGAATCGATGTTTGCCGCAAATTTCCTCTTATTGTATTTCCATCT 1482
||||||||| | || ||||||||||||||||| | |||||| |||| ||||||||||
Sbjct 1448 AGCTGAAGCCATTGGTATCGATGTTTGCCGCAAGTCTCCTCTCATTGCATTTCCATCT 1505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5