BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G24970.2
Length=2506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489356 jgi|Araly1|489356|fgenesh2_kg.6__2490__AT5G24970.1 3402 0.0
> Ahg489356 jgi|Araly1|489356|fgenesh2_kg.6__2490__AT5G24970.1
Length=2335
Score = 3402 bits (1842), Expect = 0.0
Identities = 2027/2115 (96%), Gaps = 18/2115 (1%)
Strand=Plus/Plus
Query 361 ATTGTAGCGTTCCGTGATGACAATACTATTTGTCTGTC--TCCAAGCTTGAAGAATAATG 418
||||||||||| |||||||| || |||| ||| || || || || |||| ||||||
Sbjct 236 ATTGTAGCGTTACGTGATGATAAAACTA-TTGACT-TCAAGCCCAGAGGGAAGGATAATG 293
Query 419 AACTCTCAAGACAGACAAATTCATGGGTTTCACCATTTTGCTTGCAACGCAGAGCGTATT 478
|||||||||||||||||| |||||||||||||||||||||||||| || || |||||
Sbjct 294 GGCTCTCAAGACAGACAAATACATGGGTTTCACCATTTTGCTTGCAA--CACAG-GTATT 350
Query 479 CGACGGGTTTCACCAGCGTACATGGTGGAATACCTACGGCAGAGTATGCAAAGTTGCGGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CGACGGGTTTCACCAGCGTACATGGTGGAATACCTACGGCAGAGTATGCAAAGTTGCGGA 410
Query 539 GAGAATCCCTTGAAACTGAATTTGGACATGCTCTAGGAGCATATAGCTCGAAAAGTTTTT 598
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 411 GAGAATCCCTTGAAACTGAATTTGGGCATGCCCTAGGAGCATATAGCTCGAAAAGTTTTT 470
Query 599 CTGCAGTGTATCGTTTTGGACCCTTTTTGGCTTTGTATAGAGCTGCAATCATTTCGTATC 658
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 471 CTGCAGTGTACCGTTTTGGCCCCTTTTTGGCTTTGTATAGAGCTGCAATCATTTCCTACC 530
Query 659 ATGTGGTGAAGCTTGCCTTTTGGCAGCTGTTTGTTCAGGATATGAGGAAACGGGCTGTCA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 ATGTGGTGAAGCTTGCCTTTTGGCAGCTGTTTGTTCAGGATATGAGGAAACGGGCTGTCA 590
Query 719 AGTTCCGTGAGACTCTTATCAGCTTGGGGCCTTTCTACATTAAGCTGGGACAGGCACTGA 778
||||||| ||||||||||||||||||||||||||||||| | | | |||||||||
Sbjct 591 AGTTCCGCGAGACTCTTATCAGCTTGGGGCCTTTCTACA-T----T---A-AGGCACTGA 641
Query 779 GCACGAGACCAGACATATTACCATCTATATACTGTCAGGAACTTTCAAAATTGCAGGACC 838
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 642 GCACGAGACCAGACATATTACCATCTATATATTGTCAGGAACTTTCAAAGTTGCAGGACC 701
Query 839 AGATTCCTCCATTTCCAACTACTGTTGCCATGCGATGTATTGAAGAGCAACTGGGTGCTC 898
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 702 AGATTCCTCCATTTCCAACTACTATTGCCATGCGATGTATTGAAGAGCAACTGGGTGCTC 761
Query 899 CAGTGTCAAAACTTTTTGCAGATATTAGTCTTAAACCTGTTGCTGCTGCATCCCTGGGTC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CAGTGTCAAAACTTTTTGCAGATATTAGTCTTAAACCTGTTGCTGCTGCATCCCTGGGTC 821
Query 959 AGGTATACAAAGCTCATCTGCATTCTGGACAATTGGTAGCCGTTAAGGTTCAGAGACCTG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 AGGTATACAAAGCTCATCTGCATTCTGGACAATTGGTAGCCGTTAAGGTTCAGAGACCTG 881
Query 1019 GAATGTCACTCATTCTAACACGTGATGCCCTCTTATTCAAAATGATTGGGGGACAACTGA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GAATGTCACTCATTCTAACACGTGATGCCCTCTTATTCAAAATGATTGGGGGACAACTGA 941
Query 1079 AACGATTTGCTAAAGCCCGTAAGGATCTTTTGGTAGCGGTGAATGAGATGGTCAGGCATA 1138
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 AACGATTTGCGAAAGCCCGTAAGGATCTTTTGGTAGCGGTGAATGAGATGGTCAGGCATA 1001
Query 1139 TGTTTGACGAAATAGATTACGTTCTCGAGGCAAAAAATGCAGAACGATTTGCCTCTCTAT 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1002 TGTTTGACGAAATAGATTACGTTCTCGAGGCAAAAAATGCAGAACGATTTGCTTCTCTAT 1061
Query 1199 ACAGTTTTGACTCAGGGAATGAGCAGATTGATGATAACGCTGGACCTAGGAATATGTCCA 1258
||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||
Sbjct 1062 ACAGTTTTGACTCAGGGAATGAGCAGATTAATGTTAACGATGGACCTAGGAATAAGTCCA 1121
Query 1259 GGAATCACAGAGCAGAGAACATCAAAGTCCCTAAAATTTACTGGAATTTTACACGCACAG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 GGAATCACAGAGCAGAGAACATCAAAGTCCCTAAAATTTACTGGAATTTTACACGCACAG 1181
Query 1319 CAGTGCTCACAATGGAATGGATCGATGGCATAAAATTAACAGATGAAATTAAGCTGAAAA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CAGTGCTCACAATGGAATGGATCGATGGCATAAAATTAACAGATGAAATTAAGCTGAAAA 1241
Query 1379 GGGCTTCCCTTGATAGAAGGGACTTGATCGATCAGGGCTTATCCTGTTCATTAAAGCAGC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1242 GGGCTTCCCTTGATAGAAGGGACTTGATCGATCAGGGCTTATCCTGTTCATTAAAACAGC 1301
Query 1439 TTCTTGAGGTTGGATTCTTTCATGCTGATCCGCACCCAGGAAATCTTGTGGCTACTAAAG 1498
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1302 TTCTTGAGGTTGGGTTCTTTCACGCTGATCCGCACCCAGGAAATCTTGTCGCTACTAAAG 1361
Query 1499 AAGGGTCTCTTGTTTACTTTGACTTCGGAATGATGGGGAATATTCCACGCCATTACCGTG 1558
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1362 AAGGGTCTCTTGTTTACTTTGACTTCGGAATGATGGGAAATATTCCACGCCATTACCGTG 1421
Query 1559 TGGGACTTATTCAAATTCTGGTGCATTTTGTCAACCGTGATTCTCTAAGTTTGGCAAATG 1618
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 TTGGACTTATTCAAATTCTGGTGCATTTTGTCAACCGTGATTCTCTAAGTTTGGCAAATG 1481
Query 1619 ATTTCCTGTCCTTGGGATTTTTGCCTGAAGGGGTTGATATACAAGCAGTTTCAAATGCTT 1678
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1482 ATTTCCTGTCCTTGGGATTTTTGCCTGAAGGGGTCGATATACAAGCAGTTTCAAATGCTT 1541
Query 1679 TGCGTACTTCATTTGGTTCTACTACGAGAATATCACAAGATTTCCAGGGGGTGATGGAAC 1738
||||| ||||||||||||| |||||||| |||||||||||||||||||||| |||||||
Sbjct 1542 TGCGTGCTTCATTTGGTTCGACTACGAGGTTATCACAAGATTTCCAGGGGGTAATGGAAC 1601
Query 1739 AATTATATGATGTTATGTACGAGTTCAACTTTTCGCTGCCTCCAGACTATGCTCTTGTTA 1798
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1602 AATTATATGATGTTATGTACGAGTTCAACTTTTCGCTGCCTCCAGATTATGCTCTTGTTA 1661
Query 1799 TAAGATCTCTTGGTTCACTGGAAGGCACGGCTAAGATTCTTGATCCAGAGTTTAAAGTGA 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 TAAGATCTCTTGGTTCACTGGAAGGCACGGCTAAGATTCTTGATCCAGAGTTTAAAGTGA 1721
Query 1859 TTGAGAGTGCATATCCATTTGTTATCGGGAGGCTATTAGCAGATCCAAGCCCAGATATGA 1918
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 TCGAGAGCGCATATCCATTTGTTATCGGGAGGCTATTAGCAGATCCAAGCCCAGATATGA 1781
Query 1919 GGAAAATACTAAGGGAGCTTGTCATTTGTAATGATGGATCAATAAGGTGGAATCGTCTTG 1978
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 GGAAAATTCTAAGGGAACTTGTCATTTGTAATGATGGATCAATAAGGTGGAATCGTCTTG 1841
Query 1979 AACGCCTGGTAGCAGCAATATCAGAACAGGCTTCTGCGACTTCAGGAGACTCTCCAGAAG 2038
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1842 AACGCCTGGTAGCAGCTATATCAGAACAGGCTTCTGCGACTTCAGGAGACTCTCGAGAAG 1901
Query 2039 ATAAAACGTTGAAGAAATCATCGGAACTGAAATCATTCGACATGCATTCAGTAGTTTCCG 2098
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1902 ATAAAACGTTGAAGAAATCATCGGAACTAAAATCATTCGACATGCATTCAGTAGTTTCCG 1961
Query 2099 CAACAGAAGATCTGCTACTGTTCATATTATCCGAGAAAGGGCAGAGAGTTCGGGTCTTCC 2158
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1962 CCACAGAAGATCTGCTACTGTTCATATTATCAGAGAAAGGGCAGAGAGTTCGAGTCTTCC 2021
Query 2159 TTCTTCAAGACATAATCAGAGTGGTTGATATTTTCCTGGAAGTAGAGGCTCTTGAGCTCA 2218
|||| || |||||||||||||||||||| || |||||||||| || ||||||||| || |
Sbjct 2022 TTCTACAGGACATAATCAGAGTGGTTGACATATTCCTGGAAGAAGCGGCTCTTGATCTTA 2081
Query 2219 ACAAGACCATCAATCTTAAGACGGAAGAAGGGACAATGAAAAGAGTGAGCAATGGATTCA 2278
||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 2082 ACACGACCATCAATCTTAAGAGGGAAGAAGGGACAATGAATAGAGTGAGCAATGGATTCA 2141
Query 2279 AAG-GTCTGAGTGAGGCGGTGAAGCTTGCACCGGGAATGTGGATATCAATGCTTCTTCGG 2337
| | |||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2142 A-GTGTCTGAATGAAGCGGTGAAGCTTGCACCTGGAATGTGGATATCAATGCTTCTTCGG 2200
Query 2338 ATGTCAAGGAAGTCTGAGGTTCATAGTTATGCTTTAGATATTGTTTCTGCATTGTCTACA 2397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2201 ATGTCAAGGAAGTCTGAGGTTCATAGTTATGCTTTAGATATTGTTTCTGCATTGTCTACA 2260
Query 2398 CATTTTGGCCACAAAGTGCCTCACACTTGTTGGATCCTTCTCTCCAAATTGCTCCATCAC 2457
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2261 CATTTTGGCCACAAAGTGCCTCACACTTGTTGGATCCTTTTCTCCAAATTGCTCCATCAC 2320
Query 2458 AATAAGAGCCAATAA 2472
| || ||||||||||
Sbjct 2321 AGTAGGAGCCAATAA 2335
Score = 364 bits (197), Expect = 1e-99
Identities = 225/238 (95%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 1 ACGTGGAGAAAGAGACT-CTCAAAACTTTCTTCGTCTTCTTCGGACGGACAATCTCGTTT 59
||||||||| ||||| | ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1 ACGTGGAGAGAGAGA-TACTCAAAACTTTCTTCTTCTTCTTCGGACGGACGATCTCGTTT 59
Query 60 ACGCATTTTATCGAACAGTTTGTGTGCATAAAAGCTAACGAGTGGTGAATCTAACGGACT 119
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 60 ACGCATTTTATCGAACAGTTTCTGTGCATAAAAGCT-ACGAGTGGTGAATCAAACGGACT 118
Query 120 ATGGGATTTTCGCTTGCTGTTCGACTGAATAGATCTTCGTCTCGTTCGTGTTGTTAGCCG 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 119 ATGGGATTTTCGCTTGCTGTTCGACTGAATAGATCGTCGTCTCGTTCGTGTTGTTAGCCG 178
Query 180 ATGAGGAATGCCGTTGTTGCGCTCCGCCATCACCGTCGTGTTTCGCTGCTCCGGAGAA 237
|||||||||| ||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 179 ATGAGGAATGTCGTTGTTGCTCTCCGCCATCATCGCCGTGTTTCGCTGCTCCGGAGAA 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94463807600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5