BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25030.1
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942059 jgi|Araly1|942059|scaffold_602603.1 870 0.0
> Ahg942059 jgi|Araly1|942059|scaffold_602603.1
Length=625
Score = 870 bits (471), Expect = 0.0
Identities = 548/585 (94%), Gaps = 6/585 (1%)
Strand=Plus/Plus
Query 1 ATGGATGTTCAGGAATCTAAAAGGT-TAAGTCGATATAGCAATGAGCAAAAAATACTCGT 59
||||||||||| ||||||| || || |||||||||||||||| |||||||||||||||||
Sbjct 22 ATGGATGTTCACGAATCTAGAA-GTCTAAGTCGATATAGCAACGAGCAAAAAATACTCGT 80
Query 60 GGTCGGAGAAGGAGAGTTTTCATTTTCTTTGTCTTTAGCAAAAGCCTTGGGTTCTGCCAC 119
||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 81 GGTGGGAGAAGGAGAGTTTTCATTTTCTTTGTCTTTAGCCAAAGCATTTGGTTCTGCCAC 140
Query 120 CAACATCACTGCAATATCGCTTGATATTCGAGAGGATCTAGGGCGTAATTACAACAATGG 179
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 141 CAACATCACTGCAATATCGCTTGATATTCGAGAGGAGCTAGGGCGTAACTACAACAATGG 200
Query 180 AAAAGGGAACGTGGAAGAGTTGGAGAGACTTGGTTGCACTGTGGTCCGTGGTGTTAATGT 239
||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct 201 AAAAGTGAACGTGGAAGAGTTGGAGAGACTTGGATGCACGGTGGTCCGCGGTGTTAACGT 260
Query 240 ACACTCCATGAAATCAGACGATCGCTTAGCTCATTACGACATAATCATCTTTAATTTTCC 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 ACACTCCATGGCCTCAGACGATCGCTTAGCTCATTACGACATAATCATCTTTAATTTTCC 320
Query 300 TCATGCAGGGAAACGCAATAAGGTATTTGGAGGATTTATGGAGAGTGCAAGAGAGATGAT 359
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 321 TCATGCAGGGAAACGTGATAAGGTATTTGGAGGATTTATGGAGAGTGCGAGAGAGATGAT 380
Query 360 GAAAGACGAAGATGGAGAGATTCATATCACTCTAAACACACTAAAC-CCATTTAACAAGT 418
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 381 GAAAGACGAAGATGGAGAGATTCATATCACTCTAAACACACTAC-CTCCATTTAACAAGT 439
Query 419 GGGATTTAAAGGCTCTAGCTGAAGAAA-GTGGTTTGCGTTTAATCCAGAGAATGCAATTC 477
||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 440 GGGATATAAAGGCTCTAGCTGAAGAAAAG-GGTTTGCGTTTAATCCAGAGAATGCAATTC 498
Query 478 ATTAAATGGGCATTCCCAAGTTCCTCCAACAAAAGAGAAAGTGGAAGTAATTGTGATTTT 537
| ||||||||||||||||| || ||||||||| |||| |||||||||||| | |||||||
Sbjct 499 ACTAAATGGGCATTCCCAACTTACTCCAACAAGAGAGGAAGTGGAAGTAACTATGATTTT 558
Query 538 ATATATCCTATCGGATCAGCTATCACTTACATGTTTAAGAAATAG 582
|| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 559 ATCTATCCTATCGGATCAGCTATTACTTACATGTTTAAGAAATAG 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21290818662
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5