BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25050.1 Length=2041 Score E Sequences producing significant alignments: (Bits) Value Ahg489360 jgi|Araly1|489360|fgenesh2_kg.6__2494__AT5G25050.1 2643 0.0 > Ahg489360 jgi|Araly1|489360|fgenesh2_kg.6__2494__AT5G25050.1 Length=1918 Score = 2643 bits (1431), Expect = 0.0 Identities = 1770/1926 (92%), Gaps = 53/1926 (3%) Strand=Plus/Plus Query 23 tcttcttcttcAAT-GGTCATTTGTTGTTCATACGAAAACAGGGTCAAC---G---AATG 75 |||||||||||||| ||| |||||||||||||||||||||| ||||||| | |||| Sbjct 1 TCTTCTTCTTCAATGGGT-ATTTGTTGTTCATACGAAAACA-GGTCAACGAAGCTTAATG 58 Query 76 TGTGCAAATTTCATTTTTGTTTCTTGAG-TTTAATTCAAGATTCATCATATTTGATTCCC 134 | ||| ||| |||| |||||||||||| |||||||||||||||||||| |||||||||| Sbjct 59 TCTGCCGATTCCATTCTTGTTTCTTGAGCTTTAATTCAAGATTCATCATTTTTGATTCCC 118 Query 135 AAATCTTTGATTTTTGACTTGCTTACATC-AAAAGATTCATCCtttttttAATAATCTGA 193 ||||||||| ||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 119 AAATCTTTGTTTTTTGACTTGCTTACATCAAAAAGATTCATCCTTTTTTT-ATGATCTGA 177 Query 194 GCTCAATCCAATCCAAGACATACCAACTTCAAACAACTCTCTTGTCCTCGCCCCTCG--G 251 |||||||||||||||||| ||||||||||||||||| |||||||||||| || | Sbjct 178 GCTCAATCCAATCCAAGAGATACCAACTTCAAACAA--CTCTTGTCCTCGGATCT-GTTT 234 Query 252 ATCTGTTTTTCAGACCAAACCCATATCAAAAGTTTCAACATTTAAGCTCAAAACAGAGCC 311 || | |||| |||||||||| ||||||||||||||||||| |||||||| ||||||| Sbjct 235 TTCAG-AGTTCAAACCAAACCCACATCAAAAGTTTCAACATTTGAGCTCAAACCAGAGCC 293 Query 312 AAATCTTGAATCTTTCTCCTCCTTGCAAGTTATGGTAGTAGAAGAGCAAAGCCTTGAAAA 371 |||||||||| | || || | | || | | ||||||||||| ||||||||| Sbjct 294 AAATCTTGAA------T-CT--TT-C--G-TA--G-A--AGAAGAGCAAAACCTTGAAAA 335 Query 372 CGGCGGATCCGTACATGTGGTCAAAGGAGAAAGTAATTTCCGTAATGTGGTGTGTGGTCC 431 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 336 CGGTGGATCCGTACATGTGGTCAAAGGAGAAAGTAATTTCCGTAATGTGGTGTGTGGTCC 395 Query 432 TGTACGGTGGCTAAAGATGTTGTCTTCAGAGCTTCATTGGAGCTTTGTGTTTGGTGTAGT 491 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 396 TGTGCGGTGGCTAAAGATGTTGTCTTCAGAGCTTCATTGGAGCTTTGTGTTTGGTGTGGT 455 Query 492 CTCACTATATGGAATTAACCAAGGGCTTGGTGGCTCATTAGGTCGTGTAGCTACAGAGTA 551 |||||| || || || ||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 456 CTCACTGTACGGTATAAACCAAGGGCTTGGTGGCTCATTGGGTCGTGTTGCTACAGAGTA 515 Query 552 TTATATGAAAGATGTTCAAAAAGTTCAGCCTTCTGAATCTCAAGCTCTCACTGCAATCAC 611 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 516 TTATATGAAAGATGTTCAAAAAGTTCAGCCTTCAGAATCTCAAGCTCTCACTGCAATCAC 575 Query 612 TAAGATTCCATGGATCATTAAACCACTTTGGGGCATTCTCACTGATGTTCTTCCCATCTT 671 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 576 TAAGATTCCATGGATCATTAAGCCTCTTTGGGGCATTCTCACTGATGTTCTTCCCATCTT 635 Query 672 TGGTTTCCATAGACGTCCTTACTTCATTTTAGCAGGGGTGCTTGGAGTGGTTTCATTGTT 731 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 636 TGGTTTCCATAGACGTCCTTACTTCATTTTAGCCGGGGTGCTTGGAGTGGTTTCATTGTT 695 Query 732 GTTTATTTCACTGCATAGTAATCTACACCTTTACTTGGCACTGTTTTGGATGACAATATC 791 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 696 GTTTATTTCACTGCATAGTAATCTACACCTTTACTTGGCACTGTTGTGGATGACAATATC 755 Query 792 AAGTGCTGCAATGGCGATTGCTGATGTAACCATTGATGCTTGTACTGCTTACAATAGTAT 851 ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct 756 AAGTGCTGCAATGGCGATTGCCGATGTAACTATTGATGCTTGCACTGCTTACAATAGTAT 815 Query 852 CAAACATCCTTCTCTTGCATCGGATATGCAGAGTTTATGCAGTTTAAGCTCTTCCATTGG 911 |||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||| Sbjct 816 CAAACACCCTTCTCTTGCATCGGATATGCAGAGCTTATGTAGCTTAAGCTCTTCCATTGG 875 Query 912 AGCACTTCTTGGTTTCTTTATGAGTGGCATCTTAGTTCATCTTGTTGGCTCTAAGGGTGT 971 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 876 AGCACTTCTTGGTTTCTTTATGAGTGGCATCTTAGTTCATATTGTTGGCTCTAAGGTTGT 935 Query 972 CTTTGGATTGCTGACATTCCCATTCGCGTTAGTATCGGTAGTCGGGATCGTGTTTAGTGA 1031 |||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 936 CTTTGGCTTGCTGACGTTCCCATTCGCATTAGTATCAGTAGTCGGGATCGTGTTTAGTGA 995 Query 1032 GCCCCATGTTCCTGGTTTCTCTTACAAACAGGTGAACCAGAAATTTACCGATGCAGGGAA 1091 |||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct 996 GCCCCATGTTCCTGGTTTTTCTTACAAACAGGTAAACCAGAAATTTGCCGATGCAGGGAA 1055 Query 1092 AGCGATGTGGAGGACAATGAAGTGTTCAGATGTGTGGCGGCCGAGTTTGTATATGTACAT 1151 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1056 AGCGATGTGGAGGACAATGAAGTGCTCAGATGTGTGGCGGCCGAGTTTGTATATGTACAT 1115 Query 1152 TTCCCTTACTCTTGGTTTGAACATACATGAAGGTCTCTTCTATTGGTTCACAGATTCAAA 1211 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1116 TTCCCTTACTCTTGGTTTGAACATTCATGAAGGTCTCTTCTATTGGTTCACAGATTCGAA 1175 Query 1212 GGATGGTCCTTTGTTTGCTCAGGAAACAGTTGGTTTCATTCTCTCCATTGGTTCAATCGG 1271 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1176 GGATGGTCCTTTGTTTGCTCAGGAAACGGTTGGTTTCATTCTCTCAATTGGTTCAATCGG 1235 Query 1272 ATCGATTCTAGCAGCAACGTTATACCAACTAGTCCTAAAGGATCATCCGTTCCGCGGACT 1331 ||||||||||| ||||||| | |||||||||||||| |||||||||||||||||||| || Sbjct 1236 ATCGATTCTAGGAGCAACGCTGTACCAACTAGTCCTTAAGGATCATCCGTTCCGCGGCCT 1295 Query 1332 TTGTTTGTGGACTCAACTTCTCTTTGCTCTATCGGGAATGCTTGACCTCATTCTTGTGTT 1391 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| | Sbjct 1296 TTGTTTGTGGACTCAACTTCTCTTTGCTTTATCCGGAATGCTTGACCTCATTCTTGTGCT 1355 Query 1392 CCGTCTCAACTTAAAATTTGGTTTACCGGATTATCTCTTCATAGTAGTGGACGAGATAGT 1451 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1356 ACGTCTCAACTTAAAATTTGGTTTACCGGATTATCTCTTCATAGTAGTGGACGAGATAGT 1415 Query 1452 TTCTCAGATGATCGGACGCTTGAAATGGATGCCGCTGCTTGTCCTCACTTCAAAGCTTTG 1511 |||||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 1416 TTCTCAAATGATTGGACGCCTGAAATGGATGCCGCTGCTCGTCCTCACTTCAAAGCTTTG 1475 Query 1512 TCCCCACGGAATTGAAGGGACGTTCTTTGCATTGCTAATGTCAATTGACAATGCAGGCCT 1571 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1476 TCCTCACGGAATCGAAGGGACGTTCTTTGCATTGCTAATGTCAATTGACAATGCAGGCCT 1535 Query 1572 CATGACCTCATCTTGGCTTGGAGGGATAATGTTGCATGTCCTCAAGGTGACTCGGACTGA 1631 ||||||||| |||||||| ||||| ||| ||||||| ||||||||||||||||||||||| Sbjct 1536 CATGACCTCGTCTTGGCTCGGAGGAATATTGTTGCACGTCCTCAAGGTGACTCGGACTGA 1595 Query 1632 GTTTGGTAACCTGTGGCTTGCGGTTTTGGTCAGGAATGTCATGAGACTTTTGCCGCTTTG 1691 |||| |||||| |||||||||||||||||||| |||||||||||||||||||| || || Sbjct 1596 GTTTCATAACCTCTGGCTTGCGGTTTTGGTCAGAAATGTCATGAGACTTTTGCCACTCTG 1655 Query 1692 TTTTCTGTTTCTTGTGCCTAAAGGAGATCAAAACACGTTCAAGCTCCCGGATGAGATAAT 1751 |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| Sbjct 1656 TTTTCTGTTTCTTGTGCCCAAAGGTGATCAGAACACGTTCAAGCTCCCGGATGAAATAAT 1715 Query 1752 GGGCGAAGATTCGGACGAAGAGAAAGATGAAAAAGAAGGAACTCGGAATTTGGAATTGGC 1811 ||||||||| || || || | |||| |||||||||||||||||||||||||||||||| Sbjct 1716 GGGCGAAGAATCAGAAGATTTGGAAGACGAAAAAGAAGGAACTCGGAATTTGGAATTGGC 1775 Query 1812 TTCTCTTGTTCACTCTGTTGATAGAAGATAGCTAGTGTTCTTTTATTATAGTGTTTGAAG 1871 ||||||||||| |||||||||||||||||||| | || | | ||||||||| Sbjct 1776 ATCTCTTGTTCAGTCTGTTGATAGAAGATAGCT--T--------AT-A-A-TGTTTGAAG 1822 Query 1872 CAAATGCTTCAGTTTTT-C-AGCAGTTT-TGCCGAACTTCACTTTTACTTCTGGAAAGTG 1928 ||||||||||||||||| | | |||||| | | ||||||||||| |||| ||| |||| | Sbjct 1823 CAAATGCTTCAGTTTTTTCCAACAGTTTCTAC-GAACTTCACTTGTACTGCTGCAAAGAG 1881 Query 1929 CAAAAG 1934 |||||| Sbjct 1882 CAAAAG 1887 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76751843675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5