BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25050.1
Length=2041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489360 jgi|Araly1|489360|fgenesh2_kg.6__2494__AT5G25050.1 2643 0.0
> Ahg489360 jgi|Araly1|489360|fgenesh2_kg.6__2494__AT5G25050.1
Length=1918
Score = 2643 bits (1431), Expect = 0.0
Identities = 1770/1926 (92%), Gaps = 53/1926 (3%)
Strand=Plus/Plus
Query 23 tcttcttcttcAAT-GGTCATTTGTTGTTCATACGAAAACAGGGTCAAC---G---AATG 75
|||||||||||||| ||| |||||||||||||||||||||| ||||||| | ||||
Sbjct 1 TCTTCTTCTTCAATGGGT-ATTTGTTGTTCATACGAAAACA-GGTCAACGAAGCTTAATG 58
Query 76 TGTGCAAATTTCATTTTTGTTTCTTGAG-TTTAATTCAAGATTCATCATATTTGATTCCC 134
| ||| ||| |||| |||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 59 TCTGCCGATTCCATTCTTGTTTCTTGAGCTTTAATTCAAGATTCATCATTTTTGATTCCC 118
Query 135 AAATCTTTGATTTTTGACTTGCTTACATC-AAAAGATTCATCCtttttttAATAATCTGA 193
||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 119 AAATCTTTGTTTTTTGACTTGCTTACATCAAAAAGATTCATCCTTTTTTT-ATGATCTGA 177
Query 194 GCTCAATCCAATCCAAGACATACCAACTTCAAACAACTCTCTTGTCCTCGCCCCTCG--G 251
|||||||||||||||||| ||||||||||||||||| |||||||||||| || |
Sbjct 178 GCTCAATCCAATCCAAGAGATACCAACTTCAAACAA--CTCTTGTCCTCGGATCT-GTTT 234
Query 252 ATCTGTTTTTCAGACCAAACCCATATCAAAAGTTTCAACATTTAAGCTCAAAACAGAGCC 311
|| | |||| |||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 235 TTCAG-AGTTCAAACCAAACCCACATCAAAAGTTTCAACATTTGAGCTCAAACCAGAGCC 293
Query 312 AAATCTTGAATCTTTCTCCTCCTTGCAAGTTATGGTAGTAGAAGAGCAAAGCCTTGAAAA 371
|||||||||| | || || | | || | | ||||||||||| |||||||||
Sbjct 294 AAATCTTGAA------T-CT--TT-C--G-TA--G-A--AGAAGAGCAAAACCTTGAAAA 335
Query 372 CGGCGGATCCGTACATGTGGTCAAAGGAGAAAGTAATTTCCGTAATGTGGTGTGTGGTCC 431
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CGGTGGATCCGTACATGTGGTCAAAGGAGAAAGTAATTTCCGTAATGTGGTGTGTGGTCC 395
Query 432 TGTACGGTGGCTAAAGATGTTGTCTTCAGAGCTTCATTGGAGCTTTGTGTTTGGTGTAGT 491
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 396 TGTGCGGTGGCTAAAGATGTTGTCTTCAGAGCTTCATTGGAGCTTTGTGTTTGGTGTGGT 455
Query 492 CTCACTATATGGAATTAACCAAGGGCTTGGTGGCTCATTAGGTCGTGTAGCTACAGAGTA 551
|||||| || || || ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 456 CTCACTGTACGGTATAAACCAAGGGCTTGGTGGCTCATTGGGTCGTGTTGCTACAGAGTA 515
Query 552 TTATATGAAAGATGTTCAAAAAGTTCAGCCTTCTGAATCTCAAGCTCTCACTGCAATCAC 611
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 516 TTATATGAAAGATGTTCAAAAAGTTCAGCCTTCAGAATCTCAAGCTCTCACTGCAATCAC 575
Query 612 TAAGATTCCATGGATCATTAAACCACTTTGGGGCATTCTCACTGATGTTCTTCCCATCTT 671
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 576 TAAGATTCCATGGATCATTAAGCCTCTTTGGGGCATTCTCACTGATGTTCTTCCCATCTT 635
Query 672 TGGTTTCCATAGACGTCCTTACTTCATTTTAGCAGGGGTGCTTGGAGTGGTTTCATTGTT 731
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 636 TGGTTTCCATAGACGTCCTTACTTCATTTTAGCCGGGGTGCTTGGAGTGGTTTCATTGTT 695
Query 732 GTTTATTTCACTGCATAGTAATCTACACCTTTACTTGGCACTGTTTTGGATGACAATATC 791
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 696 GTTTATTTCACTGCATAGTAATCTACACCTTTACTTGGCACTGTTGTGGATGACAATATC 755
Query 792 AAGTGCTGCAATGGCGATTGCTGATGTAACCATTGATGCTTGTACTGCTTACAATAGTAT 851
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 756 AAGTGCTGCAATGGCGATTGCCGATGTAACTATTGATGCTTGCACTGCTTACAATAGTAT 815
Query 852 CAAACATCCTTCTCTTGCATCGGATATGCAGAGTTTATGCAGTTTAAGCTCTTCCATTGG 911
|||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 816 CAAACACCCTTCTCTTGCATCGGATATGCAGAGCTTATGTAGCTTAAGCTCTTCCATTGG 875
Query 912 AGCACTTCTTGGTTTCTTTATGAGTGGCATCTTAGTTCATCTTGTTGGCTCTAAGGGTGT 971
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 876 AGCACTTCTTGGTTTCTTTATGAGTGGCATCTTAGTTCATATTGTTGGCTCTAAGGTTGT 935
Query 972 CTTTGGATTGCTGACATTCCCATTCGCGTTAGTATCGGTAGTCGGGATCGTGTTTAGTGA 1031
|||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 936 CTTTGGCTTGCTGACGTTCCCATTCGCATTAGTATCAGTAGTCGGGATCGTGTTTAGTGA 995
Query 1032 GCCCCATGTTCCTGGTTTCTCTTACAAACAGGTGAACCAGAAATTTACCGATGCAGGGAA 1091
|||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 996 GCCCCATGTTCCTGGTTTTTCTTACAAACAGGTAAACCAGAAATTTGCCGATGCAGGGAA 1055
Query 1092 AGCGATGTGGAGGACAATGAAGTGTTCAGATGTGTGGCGGCCGAGTTTGTATATGTACAT 1151
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1056 AGCGATGTGGAGGACAATGAAGTGCTCAGATGTGTGGCGGCCGAGTTTGTATATGTACAT 1115
Query 1152 TTCCCTTACTCTTGGTTTGAACATACATGAAGGTCTCTTCTATTGGTTCACAGATTCAAA 1211
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1116 TTCCCTTACTCTTGGTTTGAACATTCATGAAGGTCTCTTCTATTGGTTCACAGATTCGAA 1175
Query 1212 GGATGGTCCTTTGTTTGCTCAGGAAACAGTTGGTTTCATTCTCTCCATTGGTTCAATCGG 1271
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1176 GGATGGTCCTTTGTTTGCTCAGGAAACGGTTGGTTTCATTCTCTCAATTGGTTCAATCGG 1235
Query 1272 ATCGATTCTAGCAGCAACGTTATACCAACTAGTCCTAAAGGATCATCCGTTCCGCGGACT 1331
||||||||||| ||||||| | |||||||||||||| |||||||||||||||||||| ||
Sbjct 1236 ATCGATTCTAGGAGCAACGCTGTACCAACTAGTCCTTAAGGATCATCCGTTCCGCGGCCT 1295
Query 1332 TTGTTTGTGGACTCAACTTCTCTTTGCTCTATCGGGAATGCTTGACCTCATTCTTGTGTT 1391
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
Sbjct 1296 TTGTTTGTGGACTCAACTTCTCTTTGCTTTATCCGGAATGCTTGACCTCATTCTTGTGCT 1355
Query 1392 CCGTCTCAACTTAAAATTTGGTTTACCGGATTATCTCTTCATAGTAGTGGACGAGATAGT 1451
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 ACGTCTCAACTTAAAATTTGGTTTACCGGATTATCTCTTCATAGTAGTGGACGAGATAGT 1415
Query 1452 TTCTCAGATGATCGGACGCTTGAAATGGATGCCGCTGCTTGTCCTCACTTCAAAGCTTTG 1511
|||||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1416 TTCTCAAATGATTGGACGCCTGAAATGGATGCCGCTGCTCGTCCTCACTTCAAAGCTTTG 1475
Query 1512 TCCCCACGGAATTGAAGGGACGTTCTTTGCATTGCTAATGTCAATTGACAATGCAGGCCT 1571
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 TCCTCACGGAATCGAAGGGACGTTCTTTGCATTGCTAATGTCAATTGACAATGCAGGCCT 1535
Query 1572 CATGACCTCATCTTGGCTTGGAGGGATAATGTTGCATGTCCTCAAGGTGACTCGGACTGA 1631
||||||||| |||||||| ||||| ||| ||||||| |||||||||||||||||||||||
Sbjct 1536 CATGACCTCGTCTTGGCTCGGAGGAATATTGTTGCACGTCCTCAAGGTGACTCGGACTGA 1595
Query 1632 GTTTGGTAACCTGTGGCTTGCGGTTTTGGTCAGGAATGTCATGAGACTTTTGCCGCTTTG 1691
|||| |||||| |||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1596 GTTTCATAACCTCTGGCTTGCGGTTTTGGTCAGAAATGTCATGAGACTTTTGCCACTCTG 1655
Query 1692 TTTTCTGTTTCTTGTGCCTAAAGGAGATCAAAACACGTTCAAGCTCCCGGATGAGATAAT 1751
|||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 1656 TTTTCTGTTTCTTGTGCCCAAAGGTGATCAGAACACGTTCAAGCTCCCGGATGAAATAAT 1715
Query 1752 GGGCGAAGATTCGGACGAAGAGAAAGATGAAAAAGAAGGAACTCGGAATTTGGAATTGGC 1811
||||||||| || || || | |||| ||||||||||||||||||||||||||||||||
Sbjct 1716 GGGCGAAGAATCAGAAGATTTGGAAGACGAAAAAGAAGGAACTCGGAATTTGGAATTGGC 1775
Query 1812 TTCTCTTGTTCACTCTGTTGATAGAAGATAGCTAGTGTTCTTTTATTATAGTGTTTGAAG 1871
||||||||||| |||||||||||||||||||| | || | | |||||||||
Sbjct 1776 ATCTCTTGTTCAGTCTGTTGATAGAAGATAGCT--T--------AT-A-A-TGTTTGAAG 1822
Query 1872 CAAATGCTTCAGTTTTT-C-AGCAGTTT-TGCCGAACTTCACTTTTACTTCTGGAAAGTG 1928
||||||||||||||||| | | |||||| | | ||||||||||| |||| ||| |||| |
Sbjct 1823 CAAATGCTTCAGTTTTTTCCAACAGTTTCTAC-GAACTTCACTTGTACTGCTGCAAAGAG 1881
Query 1929 CAAAAG 1934
||||||
Sbjct 1882 CAAAAG 1887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76751843675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5