BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25060.1
Length=3219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942061 jgi|Araly1|942061|scaffold_602605.1 4824 0.0
Ahg325618 jgi|Araly1|325618|fgenesh1_pm.C_scaffold_6000838 887 0.0
> Ahg942061 jgi|Araly1|942061|scaffold_602605.1
Length=2887
Score = 4824 bits (2612), Expect = 0.0
Identities = 2792/2879 (97%), Gaps = 11/2879 (0%)
Strand=Plus/Plus
Query 217 AGTTGGATGCTGAAACAATGAGTTCATTCTCGATCACTCGTAAGAAAACACCATTCCAGA 276
||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 4 AGTTGGATGCTAAAACTATGAGTTCATTCTCGATCACTCGAAAGAAAACGCCATTCCAGA 63
Query 277 AACACagagaagaagaagaagctaggaagaagaaagCAGAGGATGAAACGGCTCGTTTGT 336
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 64 AACACAGAGAAGAAGAAGAAGCTCGGAAGAAGAAAGCGGAGGATGAAACGGCTCGTTTGT 123
Query 337 ATCAAGAATTCGTGGAATCGTTTCAAGGGGATAATGCAACTACTAAGACTTTTGTTCGAG 396
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 124 ATCAAGAATTCGTGGAATCGTTTCAAGGAGATAATGCAACTACTAAGACTTTTGTTCGAG 183
Query 397 GTGGGACGATAAATCCTGGTGACAAGCCTAAGGTTGATTCTGAAGGTGAAAAGTCCAAAG 456
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 184 GTGGGACGATAAATCCTGGTGACAAGCCTAAGGTTGATTCTGAAGGTGAAAAGTCCGAAG 243
Query 457 ATGGGGGTTCGGTTTCAAAGAAGGGGAGTAGGTATGTTCCCTCTTTCCTTCCACCACCAC 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 ATGGGGGTTCGGTTTCAAAGAAGGGGAGTAGGTATGTTCCCTCTTTCCTTCCACCACCAC 303
Query 517 TGGCATCCaagggtaaagaaccggagaagaagagggaggaggagaggcctagggaaagag 576
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 304 TGGCATCTAAGGGTAAAGAACCGGAGAAGAAGAGGGAGGAGGAGAGGCCTAGGGAGAGAG 363
Query 577 aaaagggaaagaCTCGAAATATAGATAATTTCATGGAGGAGTTGAAACGTGAACAAGAAA 636
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 364 AAAAGGGAAAGACTCGAAATATAGATCATTTCATGGAGGAGTTGAAACGTGAACAAGAAA 423
Query 637 TGAGAGAAAGACGAAACCAGGATCGTGACCGTCAGGGCGATAGCTCGCCATCTAGCCGCT 696
||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 424 TGAGAGAGAGACGAAACCAGGATCGTGACCGTCAGGGTGATAACTCGCCATCTAGCCGCT 483
Query 697 TTGATGAGCTACCTGATGATTTTGATCCCAGTGGGAGGCCAGGATCGTTTGACGATGGTG 756
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 484 TTGATGAGCTACCTGATGATTTTGATCCCAGTGGAAGGCCAGGATCGTTTGACGATGGTG 543
Query 757 ACCCACAAACTACGAATCTGTATGTTGGGAATCTGTCCCCAAAGGTTGATGAGAATTTCC 816
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 544 ACCCACAAACTACAAATCTATATGTTGGGAATCTGTCCCCAAAGGTTGATGAGAATTTCC 603
Query 817 TTCTGCGCACTTTCGGAAGATTTGGGCCCATAGCTAGTGTCAAGATTATGTGGCCAAGAA 876
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 604 TTCTGCGCACTTTCGGAAGATTTGGACCCATAGCTAGTGTCAAGATTATGTGGCCAAGAA 663
Query 877 CAGATGAGGAGAAGAGGCGACAAAGAAACTGTGGCTTTGTTTCCTTCATGAATAGGGCTG 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CAGATGAGGAGAAGAGGCGACAAAGAAACTGTGGCTTTGTTTCCTTCATGAATAGGGCTG 723
Query 937 ATGGACAAGCTGCAAAAGATGAAATGCAAGGGATCATCGTGTACGAGTATGAACTGAAAA 996
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 724 ATGGACAAGCTGCAAAAGATGAAATGCAAGGGATCATTGTGTATGAGTATGAACTGAAAA 783
Query 997 TTGGATGGGGTAAAGCAGTTTCTCTACCGTCACAAGCATTACCCGCTCCACCACCTGGAC 1056
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 784 TTGGATGGGGTAAAGCAGTTTCTCTACCGTCACAAGCATTACCCGCTCCTCCACCTGGAC 843
Query 1057 ATATGGCTATTCGGAGTAAGGAGGGCTGCAACTTGGTTTTTTCTGGTCAAACGGGTCCAC 1116
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 844 ATATGGCTATTCGGAGTAAAGAGGGCTGCAACTTGGTTTTTTCTGGTCAAACGGGTCCAC 903
Query 1117 CGATAATAACTTCTGTTCCAAATCAAAATTCTGAGCTGGTTCTTACCCCTAATGTTCCGG 1176
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 904 CAATTATAACTTCTGTTCCAAATCAAAATTCTGAGCTGGTTCTTACCCCTAACGTTCCGG 963
Query 1177 ATATCACTGTTGTTACCCCTGAGGACGAGCACCTCAGACATGTCATTGATACATTGGCAC 1236
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 964 ATATCACTGTTGTTACCCCTGAGGACGAGCACCTCAGACATGTGATTGATACATTGGCTC 1023
Query 1237 TCTATGTTCTGGATGGTGAATGTGCTTTTGAACAAGCTATCATGGAGAGGGGCCGTGGGA 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 TCTATGTTCTGGATGGTGAATGTGCTTTTGAACAAGCTATCATGGAGAGGGGCCGTGGGA 1083
Query 1297 ATCCACTGTTCAAGTTTATGTTCGAGCTTGGCTCAAAGGAGCATACTTACTACGTCTGGA 1356
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 ATCCACTGTTTAAGTTTTTGTTCGAGCTTGGCTCAAAGGAGCATACTTACTACGTCTGGA 1143
Query 1357 GACTATATTCCTTCGCTCAGGGTGATACACTTCAAAGGTGGAGAACAGAGCCGTATATCA 1416
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1144 GACTCTATTCCTTCGCTCAGGGTGATACACTTCAAAGGTGGAGGACAGAGCCGTATATCA 1203
Query 1417 TGATAACTGGTAGTGGAAGATGGATACCGCCACCACTGCCTGTAACTAGGACCCAGGAGC 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TGATAACTGGTAGTGGAAGATGGATACCGCCACCACTGCCTGTAACTAGGACCCAGGAGC 1263
Query 1477 ACGAAAAAGAGTCTGCCAGCACTTATGCGGCGGGAAGAACCAGACGTGCGGAAGTTGAGA 1536
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1264 ACGAAAAAGAGTCTGCCAGCACATATGCAGCGGGAAGAACCAGGCGTGCGGAAGTTGAGA 1323
Query 1537 GGACTCTGACCGATCCTCAGAGGGATGAGTTCGAGGACATGTTGCGTGCTCTTACTTTAG 1596
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1324 GGACTCTGACCGACCCTCAGAGGGATGAGTACGAGGACATGTTGCGTGCTCTTACTTTAG 1383
Query 1597 AAAGGAGTCAGATAAAAGAAGCTATGGGTTTCGCTTTAGATAATGCAGATGCAGCTGGAG 1656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 AAAGGAGTCAGATAAAAGAAGCTATGGGTTTCGCTTTAGATAATGCAGATGCAGCTGGAG 1443
Query 1657 AGGTTGTTGAAGTTTTGACGGAGTCCCTGACTCTAAAAGAGACATCAATTCCAACCAAAG 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 AGGTTGTTGAAGTTTTGACGGAGTCCCTGACTCTAAAAGAGACATCAATTCCAACCAAAG 1503
Query 1717 TTGCTAGACTCATGCTTGTGTCTGATATTCTTCATAATAGCAGTGC-ACGTGTTAAAAAT 1775
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1504 TTGCTAGACTCATGCTTGTGTCTGATATTCTTCATAATAGCAGTGCCA-GTGTTAAAAAT 1562
Query 1776 GCATCTGCATACCGAACCAAATTCGAAGCAACTCTACCTGATATAATGGAAAGCTTCAAT 1835
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1563 GCATCTGCATACCGAACCAAATTCGAAGCAACTCTACCCGATATAATGGAAAGCTTCAAT 1622
Query 1836 GATCTGTACCGAAGCATAACTGGAAGAATTACTGCTGAGGCTCTAAAAGAACGGGTTCTC 1895
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 GATCTGTATCGAAGCATAACTGGAAGAATTACTGCTGAGGCTCTAAAAGAACGGGTTCTC 1682
Query 1896 AAAGTACTGCAAGTATGGGCAGATTGGTTTCTCTTTTCAGACGCATACATATATGGACTA 1955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 AAAGTACTGCAAGTATGGGCAGATTGGTTTCTCTTTTCAGACGCATACATATATGGACTA 1742
Query 1956 CGTTCCACATTTCTCCGATCAGGAGTCTCTGGTGTTACCTCATTTCATTCTATCTGCGGT 2015
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 CGATCCACATTTCTCCGATCAGGAGTCTCTGGTGTTACCTCATTTCATTCTATCTGCGGT 1802
Query 2016 GATGCACCTGAAATAGAGAACAAAAGTTACGCTGACAATATGAGTGATATTGGAAAGATA 2075
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1803 GATGCACCTGAAATAGAGAACAAAAGTTACGCTGACAATATGAGTGATATTGGGAAGATC 1862
Query 2076 AATCCAGATGCTGCACTGGCAATAGGCAAAGGAGCTGCAAGGCAAGAGCTGATGAATTTA 2135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1863 AATCCAGATGCTGCACTGGCAATAGGCAAAGGAGCTGCAAGGCAAGAGCTGATGAATTTA 1922
Query 2136 CCAATTGCTGAGCTTGAGAGGCGTTGTCGGCACAACGGACTGTCTCTTGTAGGAGGTAGA 2195
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1923 CCAATTGCTGAGCTTGAGAGGCGTTGCCGGCACAACGGACTGTCTCTTGTAGGAGGTAGA 1982
Query 2196 GTAATGATGGTTACCCGGCTACTAAGCCTTGAAGACACAGAGAAACAACGCGGCTATGAA 2255
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1983 GTAATGATGGTTGCCCGGCTACTAAGCCTTGAAGACACAGAGAAACAACGTGGCTATGAA 2042
Query 2256 GCAGTGGATGAAATTCCAAAGCATCCGCAAAACCATTCAACTTGGGAAGAAGTTAAGAGT 2315
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043 TCAGTGGATGAAATTTCAAAGCATCCGCAAAACCATTCAACTTGGGAAGAAGTTAAGAGT 2102
Query 2316 GAGCGGGAGCATATCAAGAACAGCTACGCAGAGGTTGAAATGAAAGAGCCTGTGAATCTA 2375
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 2103 GAGCGGGAGCATATCAAGAACAGCTACGCAGAGGTTGAAATGAAAGAGCCTATTAATCTG 2162
Query 2376 CCCACGACAATACCAATCCCACAGCCTGAGCTGAAAGCCTTTGTGGGAAAAGAGAAGAAT 2435
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2163 GCCACGACAATACCAATCCCACAGCCTGAGCTGAAAGCCTTTGTGGCAAAAGAGAAGAAT 2222
Query 2436 GAACTCATATTGCCAGCTTCAAAATGGGCGAGAGACGATGATGAAGCTGATGATGAACAA 2495
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2223 GACCTCATATTGCCAGCTTCAAAATGGGCGAGAGACGATGACGAAGCTGATGATGAGCAA 2282
Query 2496 AAGAGGAGCTCCTCTTCAGGAAGTGACAATACTGGTGGGATAACTTTCAAGGCCGATGGC 2555
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2283 AAGAGGAGCTCCTCTTCAGGAAGTGACAATACTGGTGGGATAACTTTCAAGGCCGATGAC 2342
Query 2556 GAGGATCTCAAGGGAAATGATTGTGTCCGTGCCCAACCTGACAACGGAATGGACGAGGAA 2615
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2343 GAGGATCTCAAGGGAAATGATTGTGTCCGTGCCCAACCTGACAATGGAATGGACGAGGAA 2402
Query 2616 CAAAGACAAAAGCGGAGACGCATAGAAGTTGCTTTGATAGAGTATCGTGAAACTCTTGAG 2675
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2403 CAAAGACAAAAGCGTAGACGCATAGAAGTTGCTTTGATAGAGTATCGTGAAACTCTTGAG 2462
Query 2676 GAACAGGGGATGAAAAACCCCGAAGAGATAGAGAGAAAAGTAGAAATAAACAGAAAGAGG 2735
|||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2463 GAACAGGGGATGAAAAACTCCGAGGAGATAGAGAGAAAAGTAGAAATCAACAGAAAGAGG 2522
Query 2736 CTTGAAGTCGATTATGGCTTATC-AGGACCTAACGAGGGCAACAGAAATCAGAAATCAAT 2794
|||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 2523 CTTGAAGTTGATTATGGCTTATCCAA-ACCTAACGAGGGCAACAGAAATCAGAAATCAAT 2581
Query 2795 AATAGAGCGGAAGGAGAAGCGTGAAGATTCACAAGAGTCCTCTAAAAAGCGGCACCGTGG 2854
||||||| |||||| |||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 2582 CATAGAGCTGAAGGATAAGCGTGAAGATTCGCAAGAATCTTCTAAAAAGCGGCACCGTGG 2641
Query 2855 GGAAAACAAGAGCCAAAGTCCGCCACGGAAATCATCAACgagggagag--a--ga--tca 2908
||||||| ||||||||||||||||||||||||||||||| |||||||| | || |||
Sbjct 2642 GGAAAACCAGAGCCAAAGTCCGCCACGGAAATCATCAACCAGGGAGAGGGAAAGAGATCA 2701
Query 2909 tgacttggggagagacagggatagagagagacacagagacagagaTAGGCAACATGATTT 2968
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2702 TGACTTGGAGAGAGACAGGGACAGAGAGAGACACAGAGACAGAGATAGGCAACATGATTT 2761
Query 2969 GAACAGGGATCGAGATCGACGTGAAAAGAGTTCAAGCCACGATCGAGACGATAATGATAG 3028
||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 2762 GAACAGGGATCGAGACCGACGTGAAAAGAGTTCAAGCCACGATCGAGATGATCATGATAG 2821
Query 3029 AAGCAAAGAGAGAGACAGGGATTGGCGCAGACGAGGCACGAGATGATAATGATGATTAT 3087
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 2822 AAGCAAAGAGAGAGACAGGGATTGGCGCAGACGAGGCACGAGATGATGATGATG-TTAT 2879
> Ahg325618 jgi|Araly1|325618|fgenesh1_pm.C_scaffold_6000838
Length=2760
Score = 887 bits (480), Expect = 0.0
Identities = 743/868 (86%), Gaps = 25/868 (3%)
Strand=Plus/Plus
Query 1028 ACAAGCATTACCCGCTCCACCACCTGGACATATGGCTATTCGGAGTAAGGAGGGCTGCAA 1087
||||||| |||| ||||| || ||||| |||||||| || ||||||||||||||||||||
Sbjct 696 ACAAGCACTACCAGCTCCTCCTCCTGGGCATATGGCAATCCGGAGTAAGGAGGGCTGCAA 755
Query 1088 CTTGGTTTTTTCTGGTCA-AACGGGTCCACCGATAATAACTTCTGTTCCAAATCAAAATT 1146
|| ||||||||||| | | |||||||||| ||||||||| ||||||||||||||||
Sbjct 756 TTTAATTTTTTCTGGT-ACATCGGGTCCACC---AATAACTTCCGTTCCAAATCAAAATT 811
Query 1147 CTGAGCTGGTTCTTACCCCTAATGTTCCGGATATCACTGTTGTTACCCCTGAGGACGAGC 1206
| ||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 812 CCGAGCTGGTTCTTACCCCAAATGTTCCGGATATCACTGTTGTTTCTCCTGAGGACGAGC 871
Query 1207 ACCTCAGACATGTCATTGATACATTGGCACTCT-ATGTTCTGGATGGTGAATGTGCTTTT 1265
|||||| |||| | ||||||||| |||| || | |||| |||||||||| || ||||||
Sbjct 872 ACCTCAAACATATTATTGATACAATGGCCCT-TAATGTACTGGATGGTGGCTGCGCTTTT 930
Query 1266 GAACAAGCTATCATGGAGAGGGGCCGTGGGAATCCACTGTTCAAGTT-TATGTTCGAGCT 1324
|||||||| || ||||||||||| ||||| |||||||| || || || | |||| |||||
Sbjct 931 GAACAAGCAATTATGGAGAGGGGGCGTGGTAATCCACTTTTTAACTTCT-TGTTTGAGCT 989
Query 1325 TGGCTCAAAGGAGCATACTTACTACGTCTGGAGACTATATTCCTTCGCTCAGGGTGATAC 1384
||||| ||||||||||| ||||| |||||||| || |||||||| ||||||||||||||
Sbjct 990 GGGCTCGAAGGAGCATACCTACTATGTCTGGAGGCTCTATTCCTTTGCTCAGGGTGATAC 1049
Query 1385 ACTTCAAAGGTGGAGAACAGAGCCGTATATCATGATAACTGGTAGTGGAAGATGGATACC 1444
|||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| ||
Sbjct 1050 CCTTCAAAGATGGAGAACAGAGCCGTACATCATGATAGCTGGAAGTGGAAGATGGATTCC 1109
Query 1445 GCCACCACTGCCTGTAACTAGGA-CCCAGGAGCACGAAAAAGAGTCTGCCA-GCACTTAT 1502
||||| ||||||| |||||| | ||| ||||| | |||||||||| || |||| ||
Sbjct 1110 CCCACCTCTGCCTGCAACTAGAAGTCCA-GAGCATGGAAAAGAGTCT-ACATGCACATAC 1167
Query 1503 GCGGC-GGGAAGAACCA-GACGTGCGGAAGTTGAG-AGGACTCTGACCGA-TCCTCAGAG 1558
|| || ||||| || || || | ||||| |||| | ||||| ||||| ||| || ||
Sbjct 1168 GCAGCAGGGAA-AAGCAGGA-GCATGGAAGCTGAGCA-AACTCTAACCGATTCC-CAAAG 1223
Query 1559 GGATGAGTTCGAGGACATGTTGCGTGCTCTTACTTTAGAAAGGAGTCAGATAAAAGAAGC 1618
|||||| || ||| |||||||||| ||||| ||||||||||||||||| || ||||||||
Sbjct 1224 GGATGAATTTGAGAACATGTTGCGCGCTCTAACTTTAGAAAGGAGTCAAATCAAAGAAGC 1283
Query 1619 TAT-GGGTTTCGCTTTAGATAATGCAGATGCAGCTGGAGAGGTTGTTGAAGTTTTGACGG 1677
||| |||||| ||||| ||||| |||||||||||||||||||||||||||||| |||| |
Sbjct 1284 TATGGGGTTT-GCTTTGGATAACGCAGATGCAGCTGGAGAGGTTGTTGAAGTTCTGACAG 1342
Query 1678 AGTCCCTGACTCTAAAAGAGACATCAATTCCAACCAAAGTTGCTAGACTCATGCTTGTGT 1737
|||| |||| || ||||||||||| ||||| || |||||||| ||||||||||||||||
Sbjct 1343 AGTCATTGACCCTGAAAGAGACATCGATTCCCACTAAAGTTGCAAGACTCATGCTTGTGT 1402
Query 1738 CTGATATTCTTCATAATAGCAGTGCACGTGTTAAAAATGCATCTGCATACCGAACCAAAT 1797
|||| ||||||||||||||||| || |||||||||||||| ||||||||||| || ||||
Sbjct 1403 CTGACATTCTTCATAATAGCAGCGCTCGTGTTAAAAATGCCTCTGCATACCGGACAAAAT 1462
Query 1798 TCGAAGCAAC-TCTACCTGATATAATGGAAAGCTTCAATGATCTGTACCGAAGCATAACT 1856
|||||||||| | |||| |||||||||||||||||||| ||||| ||||| ||| |||||
Sbjct 1463 TCGAAGCAACAT-TACCCGATATAATGGAAAGCTTCAACGATCTATACCGCAGCGTAACT 1521
Query 1857 GGAAGAATTACTGCTGAGGCTCTAAAAG 1884
|| || ||||| || |||||||| ||||
Sbjct 1522 GGCAGGATTACCGCGGAGGCTCTTAAAG 1549
Score = 448 bits (242), Expect = 2e-124
Identities = 413/494 (84%), Gaps = 18/494 (4%)
Strand=Plus/Plus
Query 487 GGTATGTTCCCT-CTTTCCTTCCACCACCACTGGCATCCaagggtaaagaaccggagaag 545
|||||||||||| |||| || || |||||| ||||||| |||||||||||||| |||||
Sbjct 187 GGTATGTTCCCTCCTTT-CTCCCCCCACCATTGGCATCTAAGGGTAAAGAACCAGAGAA- 244
Query 546 aagagggaggaggagaggcctagggaaagagaaaagggaaagaCTCGAAATATAGATAAT 605
| ||||| || ||||| | | ||| |||||||||| |||||||||||| |||||| ||
Sbjct 245 TA-AGGGAAGAAGAGAGATCAAAGGAGAGAGAAAAGGTAAAGACTCGAAACATAGATCAT 303
Query 606 TTCATGGAGGAGTTGAAACGTGAACAAGAAATGAGAGAAAGACGAAAC------CA-G-G 657
|| |||||||| ||||||||||||||||||||||||||||| |||||| || | |
Sbjct 304 TTTATGGAGGATTTGAAACGTGAACAAGAAATGAGAGAAAGGCGAAACAAGGATCACGAG 363
Query 658 -A-T--CGTGACCGTCAGGGCGATAGCTCGCCATCTAGCCGCTTTGATGAGCTACCTGAT 713
| | ||||||| | | | |||| | || |||||||||||||||||||||||||||||
Sbjct 364 AATTCCCGTGACCATAATAGTGATAACACGTCATCTAGCCGCTTTGATGAGCTACCTGAT 423
Query 714 GATTTTGATCCCAGTGGGAGGCCAGGATCGTTTGACGATGGTGACCCACAAACTACGAAT 773
||||||||||||||||| ||| ||| || || || |||||||||||||||||||| |||
Sbjct 424 GATTTTGATCCCAGTGGAAGGTTAGGGTCATTGGAAGATGGTGACCCACAAACTACAAAT 483
Query 774 CTGTATGTTGGGAATCTGTCCCCAAAGGTTGATGAGAATTTCCTTCTGCGCACTTTCGGA 833
|| |||||||||||||| || | ||||||||||| ||||| ||||||| ||||| |||
Sbjct 484 CTATATGTTGGGAATCTTTCAGCTAAGGTTGATGAAAATTTTATTCTGCGGACTTTTGGA 543
Query 834 AGATTTGGGCCCATAGCTAGTGTCAAGATTATGTGGCCAAGAACAGATGAGGAGAAGAGG 893
|||||||||| ||||||||||| || ||||||||||||| ||| || || ||||| |||
Sbjct 544 AGATTTGGGCGAATAGCTAGTGTTAAAATTATGTGGCCAATAACGGAGGAAGAGAAAAGG 603
Query 894 CGACAAAGAAACTGTGGCTTTGTTTCCTTCATGAATAGGG-CTGATGGACAAGCTGCAAA 952
||| ||||| | || ||||||||| | ||||||||||| | | || || |||||||||||
Sbjct 604 CGAGAAAGACATTGGGGCTTTGTTGCTTTCATGAATAGAGTC-GACGGGCAAGCTGCAAA 662
Query 953 AGATGAAATGCAAG 966
||||||||||||||
Sbjct 663 AGATGAAATGCAAG 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121622152285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5