BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25070.1
Length=2494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489361 jgi|Araly1|489361|fgenesh2_kg.6__2495__AT5G25070.1 3367 0.0
> Ahg489361 jgi|Araly1|489361|fgenesh2_kg.6__2495__AT5G25070.1
Length=2338
Score = 3367 bits (1823), Expect = 0.0
Identities = 2087/2216 (94%), Gaps = 12/2216 (1%)
Strand=Plus/Plus
Query 184 CGGAGGCGACACTGATCACGGCTACTTCTCAGCCAGATATTACGGAGGCTTTGGACGAGA 243
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 128 CGGAGGCGACACTGATCACGGCTCCTTCTCAGCCAGATATGACGGAGGCTTTGGACGAGA 187
Query 244 ATCTGTTTTCAGACTTAACGATTGTGACTCCGGTTCAACACCAACCTGAGCCGATGGAGG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 188 ATCTGTTTTCAGACTTAACGATTGTGACTCCGGTTCAACACCAACCTGAGCCGATCGAGG 247
Query 304 CAGTTATCACTACTCATCAATCTCCGGCGAAGAATTATGGACGTCAGGTGTCACGGAGGA 363
||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 248 TAGTTA-C--TACTCATCAATCTCCGGCGAAGAATTATGGACGTCAGGTTTCACGGAGGA 304
Query 364 AGAAGAGAGCGGCTGGATTAAGAATTGGATACGGTAGGCACGAAACCAACAATCTCGACG 423
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 305 AGAAAAGAGCAGCTGGATTAAGAATTGGATACGGTAGGCACGAAACCAACAATCTCGAGG 364
Query 424 AAGACGAAGATGATGCCGTTAGTCAACAATCCGATTCCGTTAGTCAAGTATCAGATTCAG 483
|||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 365 AAGACGAAGATGATTCCGTTAGTCAACAGTCCGATTCCGTTAGTCAAGTATCGGATTCCG 424
Query 484 TTAGTCAAATATCTGATTCCGTCGCGCAAGTGTTTGATTCCGGTAATCAATCTTTAGACT 543
||| |||| | | ||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 425 TTACTCAAGTGTTTGATTCCGTCGCGCAAGTGATTGATTCCGGTAATCAATCTTTGGACT 484
Query 544 CTCCTGTTGTTACTGTGGTTGTTGGTAATGGTAGCTCAAGGTTGGAGTTAGTTAAGGCTC 603
|||||| ||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 485 CTCCTGCTGTTAGTGTTGTTGTTGGTAATGGTAGCTCAAGGTTGGAATTAGTCAAGGCTC 544
Query 604 AGATCGAAGCGAAGCTAAATCGTTCTCGTGATTTGGCTGCTTCGGTTACTTCTGCTCGTA 663
|||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |
Sbjct 545 AGATCGAAGCGAAGCTAAATCGAGCTCGTGAATTGGCCGCTTCGGTTACTTCTGCTCGCA 604
Query 664 AGAATGCGATTAGGAAGAAAAGGCAAGCATCTGAGAATCTCAGATTAGCTTCTACGACGC 723
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 605 AGAATGCGATTAGGAAGAGAAGGCAAGCATCTGAGAATCTCAGATTAGCTTCTACGACTC 664
Query 724 ACGAAGAGCTCGAGAAGCAGCTTGAGGAAGCGATCGAGACAGAGGATTTCGATGCGGCTG 783
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 665 ACGAAGAGCTCGAGAAGCAGCTTGAGGAAGCGATCGAGGCCGAGGATTTCGATGCGGCTG 724
Query 784 AGAGGATTAGCGAAAGCCTCGCTGCTAAGGAAAGAGATAGGCTAGCATTGTTGGCATTGC 843
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 725 AGAGGATTAGCGAAAGCCTCGCGGCTAAGGAAAGAGATAGGCTAGCTTTGTTGGCATTGC 784
Query 844 TTCGCCAAGCGGAATCTGATTGCGATGCTATTGAGTCGAAAATGGAAGAGGTTCTTCTTT 903
|||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 785 TTCGCCAAGCAGAATCTGATTGTGACGCTATTGAGTCGAAAATGGAGGAGGTTCTTCTTT 844
Query 904 CTCAGATTGCAGCTGAAGAAGAATCTGCCTGTCTGCTTCGTAG-TTTTGGCACGGATGCT 962
||||||||||||||||||||||||| |||| ||||||||| || ||||| ||| ||||||
Sbjct 845 CTCAGATTGCAGCTGAAGAAGAATCCGCCTCTCTGCTTCGGAGGTTTTG-CACCGATGCT 903
Query 963 GAGAATGATGCTGGATCGATTCTGGAGAAAGCAGAAGCTTTTTATTCAGATGAAATGGAG 1022
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 904 GAGAATGATGCTGGATCGATTCTGGAGAAGGCAGAAGCTTTTTATTCAGATGAAATGGAG 963
Query 1023 AAATGGCATTCATGTTCTGAAGATGTTGAGGTTAGAAAAGTCGAATTGGATATAGAATCT 1082
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 964 AAATGGCATTCTTGTTCTGAAGATGTGGAAGTTAGAAAAGTCGAATTGGATATAGAATCT 1023
Query 1083 GTTGTTGTTGATAACGTTCGGTTGTCGTTGAATGGTATTCTTGAGGGATCTGTTGAACAA 1142
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1024 GTTGTTGTTGATAACGTTCGGTTGTCGTTGAATGGTACTCTTGAGGGATCCGTTGAACAA 1083
Query 1143 GATATGAAAGAGAAGGAGATACTGCAGAAGAAGAAAGAACATTTGGCAAATGAACTTGAG 1202
||||||||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||
Sbjct 1084 GATATGAAAGAAAAGGAGATGCTGCGGAAGAAGAAAGAACATTTGTCAAATGAACTTGAG 1143
Query 1203 GAGCTGCTTGCTTTGGTGAAGGCAAAGGAGAAGGAGATTGACGAGAACGATTCGCAAATA 1262
||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1144 GAGTTGCTTGCTCTGGTGAAGGCTAAGGAGAAGGAGATTGACGAGAACGATTTGCAAATA 1203
Query 1263 GAGGCAGTTGAGGAAAGAATTAACAATGTGGTGACTGGCTTCAAGGAATTGCAAACAAGT 1322
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1204 GAGGCAGTTGAGGAAAGAATTAACAATGTGGTGACTGGCTACAAGGAATTGCAAACAAGC 1263
Query 1323 ATGGATAAAATGTTAAACGATGTGCAAGCTGGTCTCACTGAGGTTGACAAGGAAACTGAA 1382
||||||||||||||||||||||||||||| |||||||| || |||| ||||||| ||||
Sbjct 1264 ATGGATAAAATGTTAAACGATGTGCAAGCGGGTCTCACCCAGATTGATAAGGAAAGTGAA 1323
Query 1383 GATTTATCAAGGAAGAAGAAAGACGTGGACGAGTTCATGACATCTGAGAAGGAGAGAGGA 1442
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GAATTATCAAGGAAAAAGAAAGACGTGGACGAGTTCATGACATCTGAGAAGGAGAGAGGA 1383
Query 1443 GCCAAACTTCGTGATCTTGCCCGTGTTTCAGCGGATGAAGCTTGTGAATATGAGGAAGTT 1502
|||||||| ||||||||||||| ||||||| | |||||||| ||||||||||||||||||
Sbjct 1384 GCCAAACTCCGTGATCTTGCCCTTGTTTCAACAGATGAAGCATGTGAATATGAGGAAGTT 1443
Query 1503 ATTAAATTGCGGAAAGGTTTGATGTCATATGTGTCTAAAACTAGAGAAGAGAGAGCTAAG 1562
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1444 ATTAAATTGCGAAAAGGTCTGATGTCATATGTGTCTAAAACTAGAGAAGAGAGAGCCAAG 1503
Query 1563 CTTGTAAATATCGAAGAGAAGCTTTCTGAGGAAGTACAGAAGCTACAAGAGGAGGTTTCC 1622
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 CTTGTAAATATCGAAGAGAAGCTTTCTGAGGAAGTACAGAAGCTACAAGAGGAGGTTTCT 1563
Query 1623 AGTACCCGAGAGTTACTTAAGGAGCGATCTTCTAAAAAGTCGATCATCCAACAGAACATT 1682
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1564 AGTACCCGAGAGTCACTAAAGGAGCGATCTTCTAAAAAGTCGATCATCCAACAGAATATT 1623
Query 1683 ACATCTTTCATGGATAAAATTATGTTCATAGAGAAAAGGATGCCGGAGCTTGAAGCAGAG 1742
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 ACATCTTTTATGGATAAAATTATGTTCATAGAGAAAAGGATGCCGGAGCTTGAAGCAGAG 1683
Query 1743 AAGAAAGTGGCTGCATCAACGAGAAATTTTAAAGAAGCTGGAAGAATAGCTGCAGAAGCC 1802
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1684 AAGAAAGTTGCCGCATCAACGAGAAATTTCAAAGAAGCTGGAAGAATAGCTGCAGAAGCC 1743
Query 1803 AAGTCTTTAAATTTAGAAAAGGATAAGACACAGATGGAAACAGGAAAAGCTAACGCTGAG 1862
||||| |||||| ||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1744 AAGTCCTTAAATCTAGAAAAGGATAAGATACAAATGGAAACAGGAAAAGCTAACGCTGAG 1803
Query 1863 CTCGAAAAAGCAGAGCATGAGATTGAAGAAACCATCAAGAGGCTACAAGAGATAGAGAAG 1922
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1804 CTCGAAAAAGCAGAACATGAGATCGAAGAAACCATCAAGAGGCTACAAGAGATAGAGAGG 1863
Query 1923 TTGATTTTGTCGAAAGAAAAAGAATTGGCTATTAGTAGATTCCAGAGGTTGCGGATTGAC 1982
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1864 TTGATTTTGTCAAAAGAAAAAGAATTGGCTATCAGTAGATTCCAGAGGTTGCGGATTGAG 1923
Query 1983 AGTGGAACTGCAAAAGCTGAGAGATCAGCTGCTCTGGAACTGAGCGACCTTGAAGAAGCT 2042
||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1924 AGTGGCACTGCAAAAGCCGAGAGATCAGCTGCTCTGGAACTGAGCGACGTTGAAGAAGCT 1983
Query 2043 AATCTTCTACTTGAGGAAGCGCAAGAAGCAGAATCCGAGGCAGAGAAGCTTAAACTCACA 2102
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1984 AAGCTTCTACTTGAGGAAGCGCAAGAAGCAGAATCCGAGGCAGAAAAGCTTAAACTCACA 2043
Query 2103 GGCGGTCTCAAAGAAGAGGAAGAGGAAGAAGAGAA--AG-CAAA-ATCTAATGAAGTTTT 2158
||||||||||||| |||||||| ||||||| || || |||| | || ||||||||
Sbjct 2044 TGCGGTCTCAAAGAGGAGGAAGAAAAAGAAGAAAACGAGGCAAAGA-CTTGCGAAGTTTT 2102
Query 2159 TGTCTCGATGGAACTCATAGCCACCGTTGGTCTGAAAAAATTACAAGAACTGGTGGAATC 2218
|||||||||||||||||||||||| ||||||||||| |||||||||||| ||| |||||
Sbjct 2103 TGTCTCGATGGAACTCATAGCCACTGTTGGTCTGAAGAAATTACAAGAATTGGCGGAATG 2162
Query 2219 TGTTCCATCTTAACTCTGAAACTGCTTCAGGTTCAATCCTAGGGACTACAGGAATGTCCT 2278
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2163 TGTTCCATCTTAACTCTGAAGCTGCTTCAGGTTCAATCCTAGGGACTACAGGAATGTCCT 2222
Query 2279 GAATCATCAAGGAAAAGAACCGAATGGTTGGTTTTGTAAATCTATCAACAACATTAAGCT 2338
||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 2223 GAATCATCAAGTAAAAGAACCAAATGGTTGGTTTTGTAGATCTATCAACAACATTAAGCT 2282
Query 2339 CCATAACGCAGTCCACGTATATGGTTTTTGTTTGGTTGT--TTTTGGGATCCATGT 2392
|||||||||||||||| ||||||||||||||||| || | |||||||||||||||
Sbjct 2283 CCATAACGCAGTCCACATATATGGTTTTTGTTTGTTTTTGGTTTTGGGATCCATGT 2338
Score = 220 bits (119), Expect = 3e-56
Identities = 158/176 (90%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 21 ATGGATGGTGGCGACGATATGGATTCCCTGTTCGAAGGGATGGAGCTTTTTACACCGGCG 80
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 1 ATGGATGGTGGCGACGATATGGATTCGCTGTTCGAAGGGATGGAGCTTTTTACGCCGGTG 60
Query 81 TCTCAGTTCTCCGGTGACAGCAAGGTAAGCTCACCGCCTCAATCT---G--AA-GAAACC 134
|| || || |||| || | ||||||||||||||||||||||||| | || ||||||
Sbjct 61 GCTGAGCTCACCGGAGATAACAAGGTAAGCTCACCGCCTCAATCTGGAGATAATGAAACC 120
Query 135 AAGGCGGCGGAGGCGACACTGATCACGGCTCCTTCTCAACCAGATGTGACGGAGGC 190
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 121 AAGGCGGCGGAGGCGACACTGATCACGGCTCCTTCTCAGCCAGATATGACGGAGGC 176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94006724660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5