BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25080.1
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489362 jgi|Araly1|489362|fgenesh2_kg.6__2496__AT5G25080.1 1345 0.0
> Ahg489362 jgi|Araly1|489362|fgenesh2_kg.6__2496__AT5G25080.1
Length=983
Score = 1345 bits (728), Expect = 0.0
Identities = 925/1013 (91%), Gaps = 41/1013 (4%)
Strand=Plus/Plus
Query 2 TTCAACACTTGTCGGCGACTCAGAGAATCTAACCGGAAACCTAATCTCTTTACCTCTGAG 61
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1 TTCAACACTTGTCGGCGACTAAGAGAATCTAACCGGAAACCTAAACTCTTTACCTCTGA- 59
Query 62 TCTATCTACGCCGGATTTTTCAATTTTCAAATTCTCGATTCGATTGAAGATGGAAGGAGG 121
| | | | | || ||||||| | |||||||||||||||||||||||||||||
Sbjct 60 T-T-T-T---TC-GA-TTTTCAA---T----TTCTCGATTCGATTGAAGATGGAAGGAGG 104
Query 122 TGGAGGAAGTA---GCGGCG-GA-----GGAGCTGGAGGAGTGGTTCCGGAATCAGCGAT 172
||||||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 105 TGGAGGAAGTAGCGGCGGCGCGACGGCGGGAGCTGGAGGAGTGGTTCCGGAATCAGCGAT 164
Query 173 TGAAGCGGTGAATCAAACACTTGCGTACCTCAAGGAACTGAAGCCACAGCTTGAGCAGAT 232
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 165 TGAAGCGGTGAATCAAACACTTGCGTACCTCAAGGAACTGAAACCACAGCTTGAGCAGAT 224
Query 233 GCTGACTTTAGCTGAGCCAGAGGTTCTCGCTGCAATGCAACCATTACAGCGAGCTAAGAC 292
||||||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||||||||
Sbjct 225 GCTGACTTTGGCTGAGCCAGAAGTTCTTGCTGCAATGCAGCCATTGCAGCGAGCTAAGAC 284
Query 293 TATGCACTTGCTAGCTGAAGCCACCACTACTCTTTACGAACTGAGGTTGAGATGTACTGG 352
|||| |||||||||||| |||||| |||||||||||||||||||||||||| ||||||||
Sbjct 285 TATGTACTTGCTAGCTGGAGCCACAACTACTCTTTACGAACTGAGGTTGAGGTGTACTGG 344
Query 353 TGTTGATCCTGATGATCATCGTGTAAAATCTGAAATTGAGCGGATAAACGTGTACAGAGA 412
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 345 TGTTGATCCTGATGATCATCGTGTGAAATCTGAAATTGAGCGGATAAATGTGTACAGAGA 404
Query 413 GAAGTTTCAGAAGTGTGTTG-ATCAAAGTAAAGGACCTTTGCGCCCGACCACTGTCTTAA 471
||||||||||||||| ||| |||||||||||| ||| ||||||||||| |||||| |||
Sbjct 405 GAAGTTTCAGAAGTGC-TTGGATCAAAGTAAAGAACCATTGCGCCCGACTACTGTCCTAA 463
Query 472 ACCGTCAGGCAGCAACCCGTTTCATCGAACATTCTCTACCTGATCTTACATCGACCCAAA 531
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 464 ACCGTCAGGCAGCAACCCGTTTTATCGAACATTCTCTACCTGATCTTACATCGACCCAAA 523
Query 532 AGCAAAGCATTAGAGACCTCAGTAAAGGAGAGAAATCGAGGATCAGGTATTCTGAAACAT 591
|||||| ||||||||||||||||| |||||||||||| ||| ||||| |||| ||||||
Sbjct 524 AGCAAAACATTAGAGACCTCAGTAGAGGAGAGAAATCAAGGTTCAGGAATTCGGAAACAA 583
Query 592 CTGCGAGAAAGAGGAAATACCAATCAAATGAGAAACAGTCTGTTCAGTCAGCTGCGAAGG 651
||||||||||||||||||||||||||| | | ||||| ||||| |||||||
Sbjct 584 CTGCGAGAAAGAGGAAATACCAATCAA--------C--T--GTTCAATCAGCCGCGAAGG 631
Query 652 ACTTTCTTGAAAAGGCAGCTCGTGAGATTATCGGTCACAATGAAAATGGTTTGAAGGGCC 711
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 632 ACTTTCTTGAAAAAGCAGCTCGTGAGATTATCGGTAACAATGAAAATGGTTTGAAGGGAC 691
Query 712 CTTTAGTAGCGGCAGCTGATGGTTCAGATGATGTCGAAGTTGGTACAGCCTGATTTATTA 771
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 692 CTTTAATGGCGGCAGCTGATGGTTCAGATGATGTTGAAGTTGGTACAGCCTGATTTACTA 751
Query 772 CCAATATATCATGCTGCTGCTACATTTTCTGGAACGTAGTTGTGGCATTCGTCATCGTCG 831
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 752 CCAATATATCATGCTGCTGCTACATCTTCTGGATCGTAGTTGTGGCATTCGTCATCGTCG 811
Query 832 ACATTGCAGAGAAGTTGGTTTTGTCAAGTTTTAAAATTTTTGGACCTAGTTAGTGTTGTG 891
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 CCATTGCAGAGAAGTTGGTTTTGTCAAGTTTTAAAATTTTTGGACCTAGTTAGTGTTGTG 871
Query 892 GTGTATGCTGTTTGTACATTGCATTGTGTT-AGTTACTGTTTTCGGAAAGCTCTTGAAGT 950
||||||||||| |||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct 872 GTGTATGCTGTATGTACATTGCATTGTGTTTAGCAACTGCTTTCGGAAAGCTCTTGAAGT 931
Query 951 TGGTGCATTTTGTATTCGGAAATAACATTAATATTTAAAAGGCAAAAGAATTC 1003
||||| |||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 932 TGGTGAATTT-GTATTCGGAAATAACATTAATCTTCAAAAGGCAAAAGAATTC 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37436704494
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5