BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25090.1
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489363 jgi|Araly1|489363|fgenesh2_kg.6__2497__AT5G25090.1 850 0.0
> Ahg489363 jgi|Araly1|489363|fgenesh2_kg.6__2497__AT5G25090.1
Length=690
Score = 850 bits (460), Expect = 0.0
Identities = 623/700 (89%), Gaps = 18/700 (3%)
Strand=Plus/Plus
Query 31 CTCTATATAGCTCATACACAAACTTCATTCTAATGGCTCAGAGAACTC-T-T-GTTGCAA 87
|||| |||| ||| ||||||||||| |||||||||||||||||||||| | | | || |
Sbjct 1 CTCTCTATATCTCTTACACAAACTTAATTCTAATGGCTCAGAGAACTCTTATCGAAGCTA 60
Query 88 CATTT-T-TTCTAATCTTCTTCTTGTTGACTAATCTCGTC-TGTAGCAAAGAGATTATTG 144
| ||| | |||| |||||||||| ||| ||||| | | | ||| ||||||||||| | |
Sbjct 61 CTTTTCTATTCT--TCTTCTTCTTCTTGGCTAATTTTG-CATGTTGCAAAGAGATTCTCG 117
Query 145 TCGGAGGCAAAACCAGCTCCTGGAAGATCCCTTCTTCGCCTTCTGAGTCCCTAAACAAAT 204
| ||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 118 TTGGAGGCAAAACCAGCGCCTGGAAAATCCCTTCTTCGCCTTCCGAGTCCCTAAACAAAT 177
Query 205 GGGCTGAGAGTTTACGGTTTCGCGTTGGCGACACTCTCGTGTGGAAGTACGAT-GAGGAA 263
||||||||||||||||||||| ||| ||||| |||||||||||||||||||| || |||
Sbjct 178 GGGCTGAGAGTTTACGGTTTCACGTCGGCGATTCTCTCGTGTGGAAGTACGATGGA-GAA 236
Query 264 AAGGACTCGGTTTTGCAAGTGACGAAAGATGCATACATTAACTGCAACACCACAAACCCA 323
||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||
Sbjct 237 AAGGACTCGGTTTTGCAAGTGACAAAAGAAGCGTACATTAACTGTAACACCACAAACCCA 296
Query 324 GCAGCTAACTACAGCAATGGAGATACTAAAGTGAAGCTAGAGAGATCTGGTCCTTACTTC 383
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 297 GCAGCTAATTACAGCAATGGAGACACTAAAGTGAAGCTAGAGAGATCCGGTCCTTACTTC 356
Query 384 TTCATCAGCGGCTCTAAAAGCAACTGCGTTGAAGGTGAGAAGCTTCATATTGTTGTCATG 443
|||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct 357 TTCATCAGCGGCTCCAAAAGTAACTGTGTTGAAGGTGAGAAGCTTCACATTGTAGTCATG 416
Query 444 TCCTCTCGTGGTGGCCACACCGGTGGtttttttACTGGTTCTTCTCCTTCTCCTGCACCA 503
||| ||||||||||||||||||||||||| ||||| || ||| |||||||||| |||||
Sbjct 417 TCCACTCGTGGTGGCCACACCGGTGGTTTCTTTACCGGCTCTGCTCCTTCTCCCGCACCT 476
Query 504 TCTCCAGCTTTGTTAGGAGCTCCCACTGTGGCTCCAGCCAGTGGTGGCTCTGCTTCTTCT 563
||||| |||||| |||||||| |||| ||||| |||| |||| | |||||||||||
Sbjct 477 TCTCCTGCTTTG---GGAGCTCCTGCTGTTGCTCCTGCCACTGGT-G--CTGCTTCTTCT 530
Query 564 TTAACTCGCCAAGTTGGGGTTTTGGGATTTGTTGGATTATTAGCGATTGTTTTGCTTTGA 623
|| |||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||
Sbjct 531 TTGACTCGCCAAGTTGGGGTTTTGGTATTTGTTGGATTATTAGGGGTTGTTTTGCTCTGA 590
Query 624 -TTTAACCTGCTTTGTTCAACTTCTATCTCTGCTTTTTGATTCTTTGATCCACAAGATTT 682
|||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 591 TTTTAACCTACTTTGTTCAAATTTTATCTCTGCTTTTTGATTCTTTGATCCACAAGATTT 650
Query 683 GTTGAATTCTTTTGCCTTTTAAATATTAATGTTATTTCCG 722
|||||||||||||||||||| | ||||||||||||||||
Sbjct 651 GTTGAATTCTTTTGCCTTTTGGAGATTAATGTTATTTCCG 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26571673149
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5