BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25100.2
Length=2485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942065 jgi|Araly1|942065|scaffold_602609.1 3199 0.0
Ahg940557 jgi|Araly1|940557|scaffold_601101.1 2097 0.0
Ahg478776 jgi|Araly1|478776|fgenesh2_kg.3__1477__AT3G13772.1 643 0.0
> Ahg942065 jgi|Araly1|942065|scaffold_602609.1
Length=1975
Score = 3199 bits (1732), Expect = 0.0
Identities = 1911/1995 (96%), Gaps = 21/1995 (1%)
Strand=Plus/Plus
Query 142 TCTGTGGAACCGCCATAGCTATGGAGTTTTATAGAAGTTCTAGAAGATTACAAATTCTTG 201
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TCTGTGGAACCGCCATAGCTATGGAGTTTTATAGAAGTTCTAGAAGATTACAAATTCTCG 60
Query 202 GATCTGTGATTCTTCTGCTCTCTATTCATGTCGCTCACTCTTTTTACCTTCCTGGTGTTG 261
|||||||||||||||| |||| ||| |||| |||| ||||||||||||||||||||||||
Sbjct 61 GATCTGTGATTCTTCTTCTCTTTATCCATGGCGCTTACTCTTTTTACCTTCCTGGTGTTG 120
Query 262 CTCCTCAGGATTTCGAAAAGGATTCAATTAGCGAAGCAATCGGAGATGAATTGAAAGTGA 321
|||||||||||||| | | | ||| |||||||||||||||||||
Sbjct 121 CTCCTCAGGATTTC------G-----A--A---AAG-----GGAGATGAATTGAAAGTGA 159
Query 322 AAGTAAACAAGTTGACATCTATAAAGACTCAGCTTCCATATTCGTATTACTCTCTTCCTT 381
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 160 AAGTAAACAAGTTGACATCTATTAAGACTCAGCTTCCGTATTCGTATTACTCTCTTCCTT 219
Query 382 TTTGTCGTCCTAAGAAGATTGTGGACAGTACTGAGAATCTTGGTGAAGTTCTTCGTGGTG 441
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 220 TTTGCCGTCCTAAGAAGATTGTCGACAGTACTGAGAATCTTGGTGAAGTGCTTCGCGGTG 279
Query 442 ACCGAATCGAAAATGCTCCTTATTCGTTTAAAATGCGTGAGGCGCAAATGTGTAATGTTC 501
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 280 ACCGAATCGAAAATGCTCCTTATTCGTTTAAAATGCGTGAGGCACAAATGTGCAATATTC 339
Query 502 TCGGTCGTGTTATGCTTGATGCAAAGTCTGCCAAAGCGTTTAAAGAGAAGATTGATGATG 561
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TCGGCCGTGTTACGCTTGATGCAAAGTCTGCCAAAGCGTTTAAAGAGAAGATTGATGATG 399
Query 562 AGTATCGAGTTAACATGATCCTTGATAATCTTCCTCTAGTGGTTCCGATCGAAAGAATTG 621
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 400 AGTACCGGGTTAACATGATCCTTGATAATCTTCCTCTAGTGGTTCCAATCGAAAGAATTG 459
Query 622 ATCCGGGTCAGGGTTCTCCTTCTGTTGTGTATCAGCTAGGATATCATGTTGGTCTTAAAG 681
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 460 ATCCGGGTCAGGGTTCTCCTTCTGTTGTGTATCAGCTAGGCTATCATGTTGGTCTTAAAG 519
Query 682 GCCAGTATGAAGGGAGCAAAGAGCAAAAGTATTTTATGCACAATCACTTGGCATTCACTG 741
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 520 GCCAGTATGAAGGGAGCAAAGAGCAAAAGTACTTTATGCACAATCACTTGGCATTTACTG 579
Query 742 TCCGGTATCATAGAGATATGCAAACCGATGCTGCAAGGATTGTGGGATTTGAGGTCAAAC 801
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 580 TCCGGTATCACAGAGATATGCAAACCGATGCTGCAAGGATTGTGGGATTTGAGGTTAAAC 639
Query 802 CATACAGTGTCAAGCATGAATACGAGGGACAATGGAGTGAGAAGACCCGTTTGACTACCT 861
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 640 CATACAGTGTTAAGCATGAATACGAGGGACCATGGAGTGAGAAGACCCGTTTGACTACCT 699
Query 862 GTGATCCCCACACTAAGCGACTGGTTGTTAGCTCAGCTACCCCTCAAGAAGTCGAAAATA 921
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GTGATCCCCACACAAAGCGCCTGGTTGTTAGCTCAGCTACCCCTCAAGAAGTCGAAAATA 759
Query 922 AGAAAGAAATTATCTTCACATATGATGTTGACTTTCAGGAAAGTGAAGTGAAGTGGGCGT 981
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 AGAAGGAAATTATCTTCACATATGATGTTGACTTTCAGGAAAGTGAAGTGAAGTGGGCGT 819
Query 982 CTAGATGGGATGCTTATCTTTTGATGAGCGACAATCAAATTCACTGGTTTTCTATTGTCA 1041
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 820 CTAGATGGGATGCTTATCTTCTGATGAGCGACAATCAAATTCACTGGTTCTCTATCGTCA 879
Query 1042 ACTCTCTTATGATCGTCCTCTTCCTCTCTGGTATGGTAGCGATGATTATGCTAAGGACCC 1101
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 880 ACTCTCTGATGATCGTCCTCTTCCTTTCTGGTATGGTAGCGATGATTATGCTAAGGACCC 939
Query 1102 TTTACCGTGACATTTCACGGTACAACGAGCTTGAGACTCAAGAGGAAGCTCAAGAAGAGA 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 TTTACCGTGACATTTCACGGTACAACGAGCTTGAGACTCAAGAGGAAGCTCAAGAAGAGA 999
Query 1162 CTGGGTGGAAACTCGTCCATGGTGATGTTTTCAGGCCTCCAGCCAATTCAGATCTTCTCT 1221
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1000 CTGGGTGGAAACTCGTCCATGGCGATGTTTTCAGGCCTCCAACCAATTCAGATCTTCTCT 1059
Query 1222 GCGTCTATGTTGGCACAGGTGTCCAGTGTTTAGGCATGGTACTTGTCACTATGATCTTCG 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 GCGTCTATGTTGGCACAGGTGTCCAGTGTTTAGGCATGGTACTTGTCACTATGATCTTCG 1119
Query 1282 CCATGCTCGGATTTTTATCACCTTCCAACCGTGGAGGTCTTATGACAGCCATGCTCCTCC 1341
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1120 CCATGCTCGGATTTCTATCACCTTCCAACCGTGGAGGTCTTATGACAGCCATGCTCCTTC 1179
Query 1342 TCTGGGTCTTCATGGGACTCTTTGCCGGTTACGCCTCTTCACGTCTCTACAAAATGTTCA 1401
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 TCTGGGTCTTCATGGGCCTCTTTGCCGGTTACGCCTCTTCACGTCTCTACAAAATGTTCA 1239
Query 1402 AAGGAACAGAATGGAAGAGAATTGCCTTCAGAACAGCCTTCTTGTTCCCTGCAGTCGTCT 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 AAGGAACAGAATGGAAGAGAATTGCCTTCAGAACAGCCTTCTTGTTCCCTGCAGTCGTCT 1299
Query 1462 CAGCCATCTTCTTTGTCCTAAACGCTCTCATCTGGGGACAAAAATCATCCGGAGCTGTTC 1521
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1300 CAGCTATCTTCTTTGTCCTAAACGCACTCATCTGGGGACAAAAATCATCTGGAGCTGTTC 1359
Query 1522 CCTTTGGAACAATGTTTGCTCTGATCTTCCTCTGGTTTGGAATCTCGGTCCCTCTTGTCT 1581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 CCTTTGGAACAATGTTTGCTCTGATCTTCCTCTGGTTTGGAATCTCGGTCCCTCTTGTCT 1419
Query 1582 TTGTCGGCGCTTACCTCGGATTCAAGAAGCCACCGCTCGATGACCCCGTGAAAACCAACA 1641
|||| ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 1420 TTGTTGGCGCGTACCTCGGATTCAAGAAGCCACCACTTGATGATCCCGTGAAAACCAACA 1479
Query 1642 AAATCCCACGTCAAATCCCGGAGCAAGCTTGGTACATGAACCCAATTTTCTCAATCCTCA 1701
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1480 AAATCCCACGTCAAATCCCAGAGCAAGCTTGGTACATGAACCCAGTTTTCTCAATCCTCA 1539
Query 1702 TTGGAGGAATCTTACCGTTCGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCACATCCA 1761
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1540 TTGGAGGAATCTTACCATTCGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTAACATCCA 1599
Query 1762 TCTGGCTCAACCAGTTCTACTACATCTTCGGTTTCCTCTTCCTCGTCTTTGTGATCCTTA 1821
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1600 TCTGGCTTAACCAGTTCTACTACATCTTCGGATTCCTCTTCCTCGTCTTTGTGATCCTTA 1659
Query 1822 TGGTCACCTGCGCCGAGATCACCATTGTTCTCTGCTACTTCCAGCTTTGCAGTGAAGACT 1881
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 TGGTCACATGCGCTGAGATCACCATTGTTCTCTGCTACTTCCAGCTTTGCAGTGAAGACT 1719
Query 1882 ATCTCTGGTGGTGGAGGTCTTACCTCACCTCAGGCTCTTCTGCGGTCTATCTCTTCCTCT 1941
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1720 ATCTCTGGTGGTGGAGGTCTTACCTCACCTCAGGTTCTTCTGCGGTCTATCTCTTCCTCT 1779
Query 1942 ACGCAGCCTTCTATTTCTTCACAAAGCTCCAGATCACTAAGCTCGTCTCAGCTATGCTCT 2001
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1780 ACGCAGCCTTCTATTTCTTCACAAAGCTCCAGATCACTAAGCTCGTCTCGGCCATGCTCT 1839
Query 2002 ACTTTGGATACATGCTCATCGCCTCTTACGCGTTTTTCGTGCTGACCGGAACAATCGGGT 2061
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1840 ACTTCGGATACATGCTTATCGCCTCTTACGCGTTTTTTGTGCTGACCGGAACAATCGGGT 1899
Query 2062 TCTACGCTTGTCTCTGGTTCACAAGACTCATCTATTCCTCGGTAAAGATCGATTGATTCA 2121
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1900 TCTACGCTTGTCTCTGGTTCACAAGGCTCATCTATTCCTCGGTAAAGATCGATTGATTCA 1959
Query 2122 GAAAAACATTCAAGA 2136
|||||||||||||||
Sbjct 1960 GAAAAACATTCAAGA 1974
> Ahg940557 jgi|Araly1|940557|scaffold_601101.1
Length=1995
Score = 2097 bits (1135), Expect = 0.0
Identities = 1667/1920 (87%), Gaps = 51/1920 (3%)
Strand=Plus/Plus
Query 208 TGATTCTTCTGCTC-TCTATTCATGTCGCTCACTCTTTTTACCTTCCTGGTGTTGCTCCT 266
|||||||||||||| || || |||| |||| ||||||| || || || ||||||||||||
Sbjct 87 TGATTCTTCTGCTCTTC-ATCCATGGCGCTAACTCTTTCTATCTCCCAGGTGTTGCTCCT 145
Query 267 CAGGATTTCGAAAAGGATTCAATTAGCGAAGCAATCGGAGATGAATTGAAAGTGAAAGTA 326
|||||||||||||||| | | | | ||| | || | | |||||||| || |
Sbjct 146 CAGGATTTCGAAAAGG-GT-GA-T---G-AGC--T--GA-A-G--GTGAAAGTG-AA-T- 187
Query 327 AACAAGTTGACATCTATAAAGACTCAGCTTCCATATTCGTATTACTCTCTTCCTTTTTGT 386
| || || || || |||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 188 -A-AA-TTAACTTCCATAAAGACTCAGCTTCCATACTCCTATTACTCCCTTCCTTTTTGT 244
Query 387 CGTCCTAAG-AAGATTGTGGACAGTACTGAGAATCTTGGTGAAGTTCTTCGTGGTGACCG 445
|||||| || ||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 245 CGTCCT-AGCAAGATTGTGGACAGTACTGAGAATCTTGGAGAAGTGCTTCGGGGTGACCG 303
Query 446 AATCGAAAATGCTCCTTATTCGTTTAAAATGCGTGAGGCGCAAATGTGTAATGTTCTCGG 505
|| || ||||| || || |||||||||||||| ||||| |||||||| ||| ||||| |
Sbjct 304 GATAGAGAATGCCCCATACTCGTTTAAAATGCGGGAGGCACAAATGTGCAATATTCTCTG 363
Query 506 TCGTGTTA-TGCTTGATGCAAAGTCTGCCAAAGCGTTTAAAGAGAAGATTGATGATGAGT 564
|| || | | |||||||||||| | || ||||| |||||||| ||||| ||||||||||
Sbjct 364 CCGGGTCACT-CTTGATGCAAAGACAGCAAAAGCTTTTAAAGAAAAGATCGATGATGAGT 422
Query 565 ATCGAGTTAACATGATCCTTGATAATCTTCCTCTAGTGGTTCCGATCGAAAGAATTGATC 624
| || || ||||||||||| || || ||||||||||| ||||| |||||||| | | |
Sbjct 423 ACCGGGTCAACATGATCCTCGACAACCTTCCTCTAGTTGTTCCAATCGAAAG-A--G-T- 477
Query 625 CGGGTCAGGGTTCTCCTTCTGTTGTGTATCAGCTAGGATATCATGTTGGTCTTAAAGGCC 684
| | ||||||||||| |||||||| |||||||| || ||||||||||||||||||||||
Sbjct 478 C-GACCAGGGTTCTCCCTCTGTTGTTTATCAGCTTGGTTATCATGTTGGTCTTAAAGGCC 536
Query 685 AGTATGAAGGGAGCAAAGAGCAAAAGTAT-TTTATGCACAATCACTTGGCATTCACTGTC 743
| || || |||||||||||||| |||| | ||||||||||||||||||||||| || |||
Sbjct 537 AATACGAGGGGAGCAAAGAGCAGAAGT-TCTTTATGCACAATCACTTGGCATTTACAGTC 595
Query 744 CGGTATCATAGAGATATGCAAACCGATGCTGCAAGGATTGTGGGATTTGAGGTCAAACCA 803
|| ||||| |||||||| ||||| ||||||||||| || ||||||||||||||||||||
Sbjct 596 CGCTATCACAGAGATATCCAAACTGATGCTGCAAGAATCGTGGGATTTGAGGTCAAACCT 655
Query 804 TACAGTGTCAAGCATGAATACGAGGGACAATGGAGTGAGAAGACCCGTTTGACTACCTGT 863
|||||||| |||||||| || |||||| | |||||||||||||||||| |||| || |||
Sbjct 656 TACAGTGTGAAGCATGAGTATGAGGGAGAGTGGAGTGAGAAGACCCGTCTGACAACATGT 715
Query 864 GATCCCCACACTAAGCGACTGGTTGTTAGCTCAGCTACCCCTCAAGAAGTCGAA-AATAA 922
||||| || || || || ||||| |||||||| ||||||||||||||||| ||| || ||
Sbjct 716 GATCCTCATACGAAACGCCTGGTCGTTAGCTCGGCTACCCCTCAAGAAGTTGAACAA-AA 774
Query 923 GAAAGAAATTATCTTCACATATGATGTTGACTTT-CAGGAAAGTGAAGTGAAGTGGGCGT 981
||| || |||||||||||||||||||| || ||| ||||||||||||||||||||||| |
Sbjct 775 GAAGGAGATTATCTTCACATATGATGTCGA-TTTCCAGGAAAGTGAAGTGAAGTGGGCAT 833
Query 982 CTAGATGGGATGCTTATCTT-TTGATGAGCGACAATCAAATTCACTGGTTTTCTATTGTC 1040
||||||||||| |||||||| || ||||| || || |||||||||||||| ||||| |||
Sbjct 834 CTAGATGGGATACTTATCTTCTT-ATGAGTGATAACCAAATTCACTGGTTCTCTATCGTC 892
Query 1041 AACTCTCTTATGATCGTCCTCTTCCTCTCTGGTATGGTAGCGATGATTATGCTAAGGACC 1100
|| ||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| ||||||
Sbjct 893 AATTCTCTGATGATCGTCCTATTCCTGTCTGGTATGGTGGCAATGATAATGCTGAGGACC 952
Query 1101 CTTTACCGTGACATTTCACGGTACAACGAGCTTGAGACTCAAGAGGAAGCTCAAGAAGAG 1160
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 953 CTTTACCGTGACATTTCACGATACAACGAGCTCGAGACTCAAGAAGAAGCTCAAGAAGAG 1012
Query 1161 ACTGGGTGGAAACTCGTCCATGGTGATGTTTTCAGGCCTCC-AGCCAATTCAGATCTTCT 1219
|| || ||||| || |||||||||||||||||||||| ||| | ||||||| ||||| ||
Sbjct 1013 ACAGGATGGAAGCTTGTCCATGGTGATGTTTTCAGGCTTCCTA-CCAATTCTGATCTGCT 1071
Query 1220 CTGCGTCTATGTTGGCACAGGTGTCCAGTGTTTAGGCATGGTACTTGTCACTATGATCTT 1279
|||||| || ||||| ||||| ||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1072 CTGCGTTTACGTTGGAACAGGGGTCCAGTGTCTAGGCATGGTATTTGTCACAATGATCTT 1131
Query 1280 CGCCATGCTCGGATTTTTATCACCTTCCAACCGTGGAGGTCTTATGACAGCCATGCTCCT 1339
|||||||||||||||| | || |||||||| || || ||||| ||||| || |||||| |
Sbjct 1132 CGCCATGCTCGGATTTCTCTCCCCTTCCAATCGGGGTGGTCTGATGACTGCAATGCTCTT 1191
Query 1340 CCTCTGGGTCTTCATGGGACTCTTTGCCGGTTACGCCTCTTCACGTCTCTACAAAATGTT 1399
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1192 GCTCTGGGTCTTCATGGGACTCTTTGCTGGTTACGCCTCTTCACGTCTCTACAAAATGTT 1251
Query 1400 CAAAGGAACAGAATGGAAGAGAATTGCCTTCAGAACAGCCTTCTTGTTCCCTGCAGTCGT 1459
|||||||||||| ||||||||||| || |||||||||||||||||||| |||||||| ||
Sbjct 1252 CAAAGGAACAGAGTGGAAGAGAATCGCTTTCAGAACAGCCTTCTTGTTTCCTGCAGTTGT 1311
Query 1460 CTCAGCCATCTTCTTTGTCCTAAACGCTCTCATCTGGGGACAAAAATCATCCGGAGCTGT 1519
||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 1312 TTCAGCAATCTTCTTTGTCCTAAACGCTCTCATCTGGGGACAGAAGTCATCCGGGGCTGT 1371
Query 1520 TCCCTTTGGAACAATGTTTG-CTCTGATCTTCCTCTGGTTTGGAATCTCGGTCCCTCTTG 1578
|||||||| |||||||||| || ||||||||||||||||||| ||||| || ||||| |
Sbjct 1372 CCCCTTTGGGACAATGTTTGCCT-TGATCTTCCTCTGGTTTGGCATCTCAGTTCCTCTCG 1430
Query 1579 TCTTTGTCGGCGCTTACCTCGGATTCAAGAAGCCA-CCGCTCGATGACCCCGTGAAAACC 1637
||||||| || | |||| |||| |||||||||||| | | | |||||||| |||||||||
Sbjct 1431 TCTTTGTTGGGGGTTACATCGGGTTCAAGAAGCCAGCAG-TTGATGACCCAGTGAAAACC 1489
Query 1638 AACAAAATCCC-ACGTCAAATCCCGGAGCAAGCTTGGTACATGAACCCAATTTTCTCAAT 1696
||||||||||| | | ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 1490 AACAAAATCCCGA-GGCAAATTCCAGAGCAAGCTTGGTACATGAACCCGGTTTTCTCAAT 1548
Query 1697 CCTCATTGGAGGAATCTTACCGTTCGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCAC 1756
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1549 CCTCATTGGAGGAATCTTACCGTTTGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCAC 1608
Query 1757 ATCCATCTGGCTCAACCAGTTCTACTACATCTTCGGTTTCCTCTTCCTCGTCTTTGTGAT 1816
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 1609 ATCCATCTGGCTCAATCAGTTCTACTACATCTTTGGGTTCCTCTTCCTCGTCTTTGTAAT 1668
Query 1817 CCTTATGGTCACCTGCGCCGAGATCACCATTGTTCTCTGCTACTTCCAGCTTTGCAGTGA 1876
||| || || || ||||||||||| ||| | || ||||||||||||||||||||||||||
Sbjct 1669 CCTCATCGTGACTTGCGCCGAGATAACCGTAGTACTCTGCTACTTCCAGCTTTGCAGTGA 1728
Query 1877 AGACTATCTCTGGTGGTGGAGGTCTTACCTCACCTCAGGCTCTTCTGCGGTCTATCTCTT 1936
||||| || ||||||||||| ||||||||||| |||||||| || || |||| |||||
Sbjct 1729 GGACTACCTTTGGTGGTGGAGATCTTACCTCACATCAGGCTCATCAGCTCTCTACCTCTT 1788
Query 1937 CCTCTACGC-AGCCTTCTATTTCTTCACAAAGCTCCAGATCACTAAGCTCGTCTCAGCTA 1995
||||||||| | | ||||| |||||||||||||| ||||| || || || ||||| || |
Sbjct 1789 CCTCTACGCCA-CGTTCTACTTCTTCACAAAGCTTCAGATAACCAAACTGGTCTCGGCGA 1847
Query 1996 TGCTCTACTTTGGATACATGCTCATCGCCTCTTACGCGTTTTTCGTGCTGACCGGAACAA 2055
|||| |||||||| |||||||||||||| |||||||| ||||| ||||| || |||||||
Sbjct 1848 TGCTTTACTTTGGGTACATGCTCATCGCGTCTTACGCATTTTTTGTGCTCACAGGAACAA 1907
Query 2056 TCGGGTTCTACGCTTGTCTCTGGTTCACAAGACTCATCTATTCCTCGGTAAAGATCGATT 2115
| |||||||| |||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 1908 TAGGGTTCTATGCTTGTCTCTGGTTCACAAGGCTCATCTATTCCTCTGTTAAGATCGATT 1967
> Ahg478776 jgi|Araly1|478776|fgenesh2_kg.3__1477__AT3G13772.1
Length=2098
Score = 643 bits (348), Expect = 0.0
Identities = 948/1234 (77%), Gaps = 56/1234 (5%)
Strand=Plus/Plus
Query 902 CCCTCAAGAAGTCGA-AAATAAGAAAGAAATTA-TCTTCACATATGATGTTGACTTTCAG 959
|||||||||||| || || | ||||||| || | || |||||||||| | | ||
Sbjct 711 CCCTCAAGAAGTTGAGCAAGGA-AAAGAAA-TAGTGTTTACATATGATG-T--C--TC-- 761
Query 960 GAAAGTGAAGTGAAGTGGGCGTCTAGATGGGATGCTTATCTTT-TGATGAGCGACAATCA 1018
||||||||| | || ||||| ||| | ||||| | || |||| | |||| ||| ||||
Sbjct 762 GAAAGTGAAATCAAATGGGCTTCTCGGTGGGACACGTACCTTTCTCATGAACGATGATCA 821
Query 1019 AATTCACTGGTTTTCTATTGTCAACTCTCTTATGATCGTCCTCTTCCTCTCTGGTATGGT 1078
||| ||||||||||| || | || || |||||||| ||||| ||||| ||||| |||||
Sbjct 822 AATCCACTGGTTTTCCATCATAAATTCACTTATGATTGTCCTTTTCCTTTCTGGAATGGT 881
Query 1079 AGCGATGATTATGCTAAGGACCCTTTAC-CGTGACATTTCACGGTACAA-CGAGCTTGAG 1136
||| ||||| ||| | || || || ||| | || || ||| ||||| | ||||||||
Sbjct 882 AGCCATGATCATGATGAGAACTCTATACAAG-GATATCTCAAACTACAATC-AGCTTGAG 939
Query 1137 ACTCAAGAGGAAGCTCAAGAAGAGACTGGGTGGAAACTCGTCCATGGTGATGTTTTCAGG 1196
|| ||||| || || || ||||||||||| ||||| || || || || ||||| ||||||
Sbjct 940 ACCCAAGATGAGGCCCAGGAAGAGACTGGATGGAAGCTTGTACACGGAGATGTCTTCAGG 999
Query 1197 CCTCCAGCCAATTC-AGATCT-TCTCTGCGTCTATGTTGGCACAGGTGTCCAGTGT-TTA 1253
|| || | || || ||| | | | || || |||||||| |||||||| ||| | ||
Sbjct 1000 CCACCGGTGAACTCTGGAT-TAT-TGTGTGTTTATGTTGGTACAGGTGTTCAG-ATCTTC 1056
Query 1254 GGCATGGT-ACTTGTCACTATGATCTTCGCCATGCTCGGATTTTTATCACCTTCCAACCG 1312
|| || || ||| || || ||||| || || |||| || || ||||| || |||||| |
Sbjct 1057 GGGAT-GTCACTGGTTACAATGATGTTTGCGTTGCTTGGCTTCTTATCTCCATCCAACAG 1115
Query 1313 TGGAGGTCTTATGACAGCCATGCTCCTCCTCTGGGTCTTCATGGGACTCTTTGCCGGTTA 1372
||||| |||||||| |||||| | ||| | ||||| ||||||||| | || || |||||
Sbjct 1116 AGGAGGGCTTATGACTGCCATGGTTCTCTTGTGGGTTTTCATGGGAATATTCGCTGGTTA 1175
Query 1373 CGCCTCTTCACGTC-TCTACAAAATGTTCAAAGG-AACAGAATGGAAGAGAATTG-CCTT 1429
| |||| || || | || |||||||||||||||| |||| | |||||||||| || ||||
Sbjct 1176 CTCCTCGTCTCGCCTTC-ACAAAATGTTCAAAGGAAACA-AGTGGAAGAGAA-TGACCTT 1232
Query 1430 -CAGAACAGCCTTCTTG-TTCCCTGCAGTCGTCTCAGCCATCTTCTTTGTCCTAAACGCT 1487
|| || || ||| || |||| | | || | | || ||||||||||| || || ||
Sbjct 1233 GAAG-ACTGCATTCATGTTTCCGGGTA-TCCTTTTTGCTATCTTCTTTGTTCTGAATGCC 1290
Query 1488 CTCATCTGGGGACAAAAATCATCCGGAGCTGTTCCCTTTGGAACAATGTTTGCTCTGATC 1547
|| || |||||| | | ||||| ||||| | || ||||| |||||||||||||| ||
Sbjct 1291 CTTATTTGGGGAGAGCAGTCATCTGGAGCCATACCATTTGGTACAATGTTTGCTCTCTTC 1350
Query 1548 TTCCTCTGGTTTGGAATCTCGGTCCCTCTTGTCTTTGTCGG-CGCTTACCTCGGATT-CA 1605
| |||||||||||| ||||| ||||| || ||||| || || || || || || || ||
Sbjct 1351 TGCCTCTGGTTTGGCATCTCAGTCCCACTAGTCTTCGTTGGTAGC-TATCT-GGGTTACA 1408
Query 1606 AGAAGCCACCGCTCGATGACCCCGTGAAAACCAACAAAATCCC-ACGTCAAATCCCGGAG 1664
|||||||| | | || || || || ||||| ||||| ||||| | | ||| | || |||
Sbjct 1409 AGAAGCCAGCAATTGAAGATCCAGTCAAAACAAACAAGATCCCGA-GACAAGTACCAGAG 1467
Query 1665 CAAG-CTTGGTACATGAACCCAATTTTCTCAATCCTCATTGGAGGAATCTTACCGTTCGG 1723
| || | ||||||||||| ||| ||||||| || || |||||||| ||| | ||||| ||
Sbjct 1468 C-AGCCGTGGTACATGAAACCAGTTTTCTCCATACTAATTGGAGGCATCCTCCCGTTTGG 1526
Query 1724 TGCAGTCTTCATCGAGCTCTTCTTCATCCTCACATCCATCTGGCTCAACCAGTTCTACTA 1783
||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct 1527 AGCAGTCTTCATCGAGCTCTTCTTCATCCTGACATCAATATGGCTGAACCAGTTCTACTA 1586
Query 1784 CATCTTCGGTTTCCTCTTCCTCGTCTT-TGTGATCCTT-ATGGTCACCTGCGCCGAGATC 1841
||||||||| ||||| || | || || | ||||| || || |||||||| || |||||
Sbjct 1587 CATCTTCGGGTTCCTTTTTATAGTGTTCT-TGATC-TTGATCGTCACCTGTGCAGAGATT 1644
Query 1842 ACCATTGTT-CTCTGCTACTTCCAGCTTTGCAGTGAAGACTATCT-CTGGTGGTGGAG-G 1898
|| | || | ||||| || ||||||||||| || |||||||| | |||||||||||| |
Sbjct 1645 AC-AGTGGTGCTCTGTTATTTCCAGCTTTGTAGCGAAGACTA-CAACTGGTGGTGGAGAG 1702
Query 1899 TCTTACCTCACCT-CAGGCTCTTCTGCGGTCTATCTCTTCCTCTACGCAGCCTTCTATTT 1957
||||| | || | | ||||| || || |||| |||||||||||| || |||||| ||
Sbjct 1703 -CTTACTTAAC-TGCGGGCTCATCCGCTTTCTACCTCTTCCTCTACTCAATCTTCTACTT 1760
Query 1958 CTTCACAAAGCTCCAGATCACTAAGCTCGTCTCAGCTATGCTCTACTTTGGATACATGCT 2017
|||||||||| | ||||||| ||||| || || | ||||||||||| || |||||| |
Sbjct 1761 CTTCACAAAGTTGGAGATCACAAAGCTAGTATCGGGAATGCTCTACTTCGGGTACATGAT 1820
Query 2018 CATCGCCTCTTACGCGTTTTTCGTGCTGACCGGAACAATCGGGTTCTACGCTTGTCT-CT 2076
|||| ||||||||| || ||||| || || || || ||||| ||||| ||||| || ||
Sbjct 1821 CATCATCTCTTACGCATTCTTCGTCCTAACTGGCACTATCGGTTTCTATGCTTG-CTTCT 1879
Query 2077 GGTTCACAAGACTCATCTATTCCTCGGTAAAGAT 2110
|||| ||| ||||| |||||||| |||||
Sbjct 1880 GGTTTGTGAGAAAGATCTACTCCTCGGTGAAGAT 1913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93663912455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5