BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25120.1
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489366 jgi|Araly1|489366|fgenesh2_kg.6__2500__AT5G25130.1 2182 0.0
Ahg489370 jgi|Araly1|489370|fgenesh2_kg.6__2504__AT5G25180.1 1160 0.0
> Ahg489366 jgi|Araly1|489366|fgenesh2_kg.6__2500__AT5G25130.1
Length=1589
Score = 2182 bits (1181), Expect = 0.0
Identities = 1443/1570 (92%), Gaps = 16/1570 (1%)
Strand=Plus/Plus
Query 141 GAAGCAAAATGAGTTTGTGGTATATCATTGTTGCATTCGTCTTCTTTTCAACTATAATCA 200
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GAAGCAAAATGAGTTTGTGGTATATCATTGTTGCATTCGTCTTCTTTTCTTCTATAATCA 60
Query 201 TTGTAAGGAACACTAGAAAGACAAAGAAGAATCTACCTCCCGGACCCCCAAGACTTCCTA 260
||||||||||||| |||| |||||||| |||||||||||| ||||| |||||||||||||
Sbjct 61 TTGTAAGGAACACGAGAACGACAAAGACGAATCTACCTCCTGGACCACCAAGACTTCCTA 120
Query 261 TTATTGGAAACTTGCACCAATTGGGATCTAAACCTCATAGTTCAATGTTCAAATTATCCG 320
| ||||| ||||| |||||||||||||| ||||||||| |||| |||||||| |||||||
Sbjct 121 TAATTGGTAACTTACACCAATTGGGATCCAAACCTCATCGTTCGATGTTCAAGTTATCCG 180
Query 321 AAAAATATGGA-CCTCTAATGGCTCT-AAGGTTT-GGAAGTGTGTCTACTGTTGTGGCTT 377
|||| |||||| | | ||||| || | || |||| |||| |||||||||||||||||| |
Sbjct 181 AAAAGTATGGATCGT-TAATGTCTTTGAA-GTTTGGGAA-TGTGTCTACTGTTGTGGCAT 237
Query 378 CTACACCAGAGACAGTAAAGGAAGTTTTAAAAACATTTGACGCAGAATGTTGTTCGCGGC 437
|||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |
Sbjct 238 CTACACCAGAGACAGTGAAGGAAGTCTTAAAAACATTTGACGTAGAATGTTGTTCGCGAC 297
Query 438 CTTATATGACTTATCCTGCAAGACTTACATACAATTTAAAAGATATTGGCTTTTGTCCCT 497
| ||||||||||||||||||||| |||||||||||||||||||| | ||||||| |||||
Sbjct 298 CATATATGACTTATCCTGCAAGATTTACATACAATTTAAAAGATCTCGGCTTTTCTCCCT 357
Query 498 ACACCAAATATTGGAGGGAGGTACGAAAGATGACAGTTGTTGAACTCTACACTGCAAAAA 557
| | |||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 358 ATAGCAAATATTGGAGAGAGGTACGAAAGATGACTGTTGTTGAACTCTACACCGCAAAAA 417
Query 558 GGGT-ACAATCATTTCAACATACAAGAAAAGAAGAAGTTGCATCACTCGTTGATTTCATC 616
| || | ||||||||||||| |||||||||||||||||||| || |||||||||||| ||
Sbjct 418 GAGTGA-AATCATTTCAACACACAAGAAAAGAAGAAGTTGCTTCCCTCGTTGATTTCTTC 476
Query 617 ACACAAGCTGCGTCATTGGAGAAACCGGTTAACTTGAACACGAAGTTAATGAAACTATCA 676
| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||
Sbjct 477 AAACAAGCTGCGTCATTGGAGAAATCGGTTAACTTGAACAATAAGTTAATGAAACTAGCA 536
Query 677 GGAAGTGTGATTTGTAGAGTTGTATTTGGTATCAATCTTAAAGGAAGTAAACTTGAGAAT 736
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 537 GGAAGTGTGATTTGTAGAGTTGCATTTGGTATCAATCTTAAAGGAAGTAAGCTTGAGAAT 596
Query 737 -CTTTATGAGGAAGTTATTCAAGGAACCATGGAGGTGGTGGGGAGTTTTGCAGCAGCAGA 795
| |||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 597 AC-TTATGAGGAAGTCATTCAAGGAACTATAGAGGTGGTGGGGAGTTTCGCAGCAGCAGA 655
Query 796 TTACTTCCCGATCATTGGTAGAATCATCGATAGGATCACAGGGTTACATAGCAAATGTGA 855
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 656 TTACTTCCCGGTCATTGGTAGAATTATCGATAGGATCACAGGGTTACATAGCAAATGTGA 715
Query 856 GAAGATTTTCAAGGCAATGGATGCATTTTTTGATCAATCTATAAAGCATCATCTAGAAGA 915
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 716 GAAGAATTTCAAGGCAATGGATGCATTTTTTGATCAATCTATAAAGCATCACCTAGAAGA 775
Query 916 TGAGAGTATTAAGGATGATATCATTGACTTGCTCCTCAAGATGGAAAGGGGAGAGATTGA 975
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TGAGAGTATTAAAGATGATATCATTGACTTGCTCCTCAAGATGGAAAGGGGAGAGATTGG 835
Query 976 ACTTGGGGAGTTTCAACTTACTCGAGACAACACCAAAGGAATTCTTTTCAATATTCTTAA 1035
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 836 ACTTGGGGAGTTTCAACTTACTCGAGACCACACCAAAGGAATTCTTTTCAATATTCTTAA 895
Query 1036 CGCTGGAATAGACACTTCTGCACAAGTTATGACATGGGTGATGACATATTTGATTTCAAA 1095
|||||||||||||||| |||||||||| |||||||||||||||||| |||||||| |||
Sbjct 896 CGCTGGAATAGACACTACTGCACAAGTCATGACATGGGTGATGACACATTTGATTAAAAA 955
Query 1096 CCCAAGAGTTATGAAGAAAGCGCAAGCCGAGGTGAGAGAAGTTATAAAAAACAAAGACGA 1155
||||||| || ||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 956 CCCAAGAATTCTGAAGAAAGCGCAAGCCGAGGTGAGAGAAGTGATCAAAAACAAAGATGA 1015
Query 1156 TATCATTGAGGAAGATATAGAACGACTCGAATATCTGAAAATGGTAG-TTAAAGAAACGT 1214
||||| || |||||||||||||||||||| ||| |||||||||| | |||||||||| |
Sbjct 1016 TATCACAGAAGAAGATATAGAACGACTCGAGTATTTGAAAATGGT-GATTAAAGAAACAT 1074
Query 1215 TTAGGGT-ATTACC-GCTCGTTCCACTTCTAATTCCAAGAGAGGCTTCAAAAGATGTAAA 1272
| ||| | | | || |||| | ||| |||| |||||||||||||||||||||||| || |
Sbjct 1075 TAAGGATAAAT-CCAGCTC-TGCCATTTCTGATTCCAAGAGAGGCTTCAAAAGATATAGA 1132
Query 1273 GATTGGAGGTTATGACATTCCAAAGAAAACATGGATCCATGTCAACATATGGGCTATTCA 1332
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1133 GATTGGAGGCTATGACATTCCAAAGAAAACATGGATTTATGTCAACATATGGGCTCTTCA 1192
Query 1333 TAGGAATCCAAACGTTTGGAAAGATCCAGAAGCTTTCATCCCCGAGAGGTTTATGGATAA 1392
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1193 GAGGAATCCAAACGTTTGGAAAGATCCAGAATCTTTCATCCCCGAAAGGTTTATGGATAG 1252
Query 1393 CCAGATTGATTATAAGGGTTTGAACTTTGAGTTTTTGCCGTTTGGTAGCGGAAGGAGAAT 1452
| ||||||| || || ||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 1253 CGAGATTGACTACAAAGGTTTGAACTTTGAGCTATTGCCGTTTGGTAGTGGAAGGAGAAT 1312
Query 1453 GTGCCCTGGTATAGGGATGGGTATGGCTTTGGTACACTTGACTCTTATCAATCTTCTTTA 1512
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1313 GTGCCCTGGTATAGGAATGGGTATGGCTTTGGTACATTTGACTCTTATCAATCTTCTCTA 1372
Query 1513 CCGATTTGATTGGAAGCTTCCGGAAGGAATGGAGGTAGAAGATGTTGATCTTGAAGAATC 1572
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1373 CCGATTTGATTGGAAGCTTCCAGAAGGAATGGAGGTAGAAGATGTTGATCTTGAAGAATC 1432
Query 1573 ATATGGACTTGTCTGTCCTAAGAAAGTTCCACTTCAGCTTATCCCGGTCCTTACCCAATG 1632
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1433 ATATGGACTTGTATGTCCTAAGAAAGTCCCACTTCAGCTTATCCCGGTCCTTACCCAATG 1492
Query 1633 GAGTTGATTTTATATTTTCATAGTTCTAAATGTAACCCTTAAGAAGTATCCTAAAGTTCT 1692
|| ||||||||||||| ||||||||| |||||||| |||| |||| ||| ||||| |||
Sbjct 1493 GACTTGATTTTATATTATCATAGTTCAAAATGTAATCCTTTGGAAGCATCTTAAAGGTCT 1552
Query 1693 TATCCTTATC 1702
|||| |||||
Sbjct 1553 TATCATTATC 1562
> Ahg489370 jgi|Araly1|489370|fgenesh2_kg.6__2504__AT5G25180.1
Length=1469
Score = 1160 bits (628), Expect = 0.0
Identities = 846/952 (89%), Gaps = 12/952 (1%)
Strand=Plus/Plus
Query 694 AGTTGTATTTGGTATCAATCTTAAAGGAAGTAAACTTGAGAAT-CTTTATGAGGAAGTTA 752
||||| |||||| || ||||| |||| || ||||||| |||| | ||||||||||||||
Sbjct 524 AGTTGGATTTGGCATAAATCTCGAAGGGAGCAAACTTGCGAATAC-TTATGAGGAAGTTA 582
Query 753 TTCAAGGAACCATGGAGGTGGTGGGGAGTTTTGCAGCAGCAGATTACTTCCCGATCATTG 812
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||
Sbjct 583 TTCAAGGAACCATGGAGGTGGTGGGAAGTTTCGCAGCAGCGGATTACTTCCCGATTATTG 642
Query 813 GTAGAATCATCGATAGGATCACAGGGTTACATAGCAAATGTGAGAAGATTTTCAAGGCAA 872
|||||||||||||||||||||| ||||||||||||||||| |||| | |||| ||| |||
Sbjct 643 GTAGAATCATCGATAGGATCACGGGGTTACATAGCAAATGCGAGACGGTTTTTAAGTCAA 702
Query 873 TGGATGCATTTTTTGATCAATCTATAAAGCATCATCTAGAAGATGAGAGTATTAAGGATG 932
||||| | ||||| ||| |||||||||||| ||| |||||||||| | |||||| ||||
Sbjct 703 TGGATTCGTTTTTCGATGAATCTATAAAGCGTCACCTAGAAGATGCTAATATTAAAGATG 762
Query 933 ATATCATTGACTTGCTCCTCAAGATGGAAAGGGGAGAGATTGAACTTGGGGAGTTTCAAC 992
|||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 763 ATATCATTGACTTGCTCCTCAAGATGGAAAGGGGAGAGATGGGACTTGGAGAGTTTCAAC 822
Query 993 TTACTCGAGACAACACCAAAGGAATTCTTTTCAATATTCTTAACGCTGGAATAGACACTT 1052
|||| ||| || ||||||||||||||||| | || |||||| |||||| | |||||||
Sbjct 823 TTACACGAAACCACACCAAAGGAATTCTTCTGAACGTTCTTATTGCTGGAGTTGACACTT 882
Query 1053 CT-G-CACAAGTTATGACATGGGTGATGACATATTTGATTTCAAACCCAAGAGTTATGAA 1110
|| | ||| | | ||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 883 CTGGCCAC-A-CTGTGACATGGGTGATGACACATTTGATTAAAAACCCAAGAGTTCTGAA 940
Query 1111 GAAAGCGCAAGCCGAGGTGAGAGAAGTTATAAAAAACAAAGACGATATCATTGAGGAAGA 1170
||||||||||||||||||||||||||| || ||||||||||| |||||| || |||||
Sbjct 941 GAAAGCGCAAGCCGAGGTGAGAGAAGTGATCAAAAACAAAGATGATATCGCAGAAGAAGA 1000
Query 1171 TATAGAACGACTCGAATATCTGAAAATGGTAG-TTAAAGAAACGTTTAGGGTATTA-CCG 1228
|||||||||||| || ||| |||||||||| | |||||||||| || ||| || | ||
Sbjct 1001 TATAGAACGACTTGAGTATTTGAAAATGGT-GATTAAAGAAACATTAAGGATA-AACCCA 1058
Query 1229 CTCGTTCCACTTCTAATTCCAAGAGAGGCTTCAAAAGATGTAAAGATTGGAGGTTATGAC 1288
|| || |||||||| |||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 1059 CTTGTGCCACTTCTGATTCCAAGAGAGGCTTCAAAAGATATAGAGATTGGAGGCTATGAC 1118
Query 1289 ATTCCAAAGAAAACATGGATCCATGTCAACATATGGGCTATTCATAGGAATCCAAACGTT 1348
|||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 1119 ATTCCAAAGAAAACATGGATTTATGTCAACGTATGGGCTATTCATAGGAATTCAAACGTT 1178
Query 1349 TGGAAAGATCCAGAAGCTTTCATCCCCGAGAGGTTTATGGATAACCAGATTGATTATAAG 1408
||||||||||||||||||||||||||||||||||||||||||| | ||||||| || ||
Sbjct 1179 TGGAAAGATCCAGAAGCTTTCATCCCCGAGAGGTTTATGGATAGCGAGATTGACTACAAA 1238
Query 1409 GGTTTGAACTTTGAGTTTTTGCCGTTTGGTAGCGGAAGGAGAATGTGCCCTGGTATAGGG 1468
||| | ||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |||
Sbjct 1239 GGTCTAAACTTTGAGTTGTTGCCATTTGGTAGTGGAAGAAGAATGTGCCCTGGTAT-GGG 1297
Query 1469 A-TGGGTATGGCTTTGGTACACTTGACTCTTATCAATCTTCTTTACCGATTTGATTGGAA 1527
| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1298 AATGGGTATGGCTTTGATACACTTGACTCTTATCAATCTTCTTTACCGATTCGATTGGAA 1357
Query 1528 GCTTCCGGAAGGAATGGAGGTAGAAGATGTTGATCTTGAAGAATCATATGGACTTGTCTG 1587
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1358 GCTTCCGGAAGGAATGAACGTAGAAGACGTTGATCTTGAAGAATCATATGGACTTGTTTG 1417
Query 1588 TCCTAAGAAAGTTCCACTTCAGCTTATCCCGGTCCTTACCCAATGGAGTTGA 1639
|||||||||||| |||||||| ||||||||||||||||| ||||||| ||||
Sbjct 1418 TCCTAAGAAAGTCCCACTTCAACTTATCCCGGTCCTTACGCAATGGACTTGA 1469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65286679930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5