BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25160.1 Length=959 Score E Sequences producing significant alignments: (Bits) Value Ahg942073 jgi|Araly1|942073|scaffold_602617.1 1061 0.0 > Ahg942073 jgi|Araly1|942073|scaffold_602617.1 Length=740 Score = 1061 bits (574), Expect = 0.0 Identities = 693/748 (93%), Gaps = 17/748 (2%) Strand=Plus/Plus Query 52 TCCCTTTTTAGCTCTCATGGACGCTTCAATAGTTTCCTCATCCACTGCTTTTCCATATCA 111 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 6 TCCCTTTTTAGCTCTCATGGACGCTTCCATAGTTTCCTCATCCACAGCTTTTCCATATCA 65 Query 112 AGATTCTCTAAACCAGAGCATCGAAGACGAAGA-AAGAGACGTTCATAATTCTAGTCACG 170 |||||||||||||||||||||| || ||||||| || |||||||||| || ||||||| | Sbjct 66 AGATTCTCTAAACCAGAGCATCAAATACGAAGACAA-AGACGTTCATGATCCTAGTCAAG 124 Query 171 AACTCAATCTCATCGACTGCATAGACGACACAACGAGTATCGTTAACGAATCTACAACAT 230 |||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| Sbjct 125 AACTCAATCTCATCGACTGCATAGACGATACAGCGAGTATCGTTAACGGATCTACAACAT 184 Query 231 CCACAGAACAAAAGCTTTTCTCATGCAACTATTGTCAAAGAACTTTCTATAGCTCACAAG 290 ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| Sbjct 185 CCACAGAACAAAAGCTTTTTTCATGTAACTACTGTCAAAGAACTTTCTATAGCTCACAAG 244 Query 291 CACTTGGTGGTCACCAAAACGCACACAAGAGAGAGAGAACGTTGGCGAAGAGAGGACAAC 350 | |||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 245 CCCTTGGTGGACACCAAAACGCACACAAGAGAGAGAGGACGTTGGCGAAGAAAGGACAAC 304 Query 351 GTATGGCAGCGTCAGCCTCAGCTTTTGGACATCCTTACGGTTTCTCTCCACTTCCTTTCC 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 GTATGGCAGCGTCAGCCTCAGCTTTTGGACATCCTTACGGTTTCTCTCCACTTCCTTTCC 364 Query 411 ACGGAC-AGTACAACAACCA-TAGGTCTTTAGGGATCCAAGCGCATTCGATAAGCCACAA 468 |||||| | ||||||||| | ||||||||| ||||| |||||||||||||| |||||||| Sbjct 365 ACGGACTA-TACAACAAC-AGTAGGTCTTTGGGGATTCAAGCGCATTCGATGAGCCACAA 422 Query 469 GCTAAGTTCTTATAACGGGTTTGGTGGTCACTATGGTCAGATCAACTGGTCAAGACTTCC 528 ||||||||| |||| |||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 423 GCTAAGTTCATATAGCGGGTTTGGTGGTCACTACGGTCAGGTCAACTGGTCAAGACTTCC 482 Query 529 ATTTGATCAACAACCAGCCATAGGTAAATTTCCCTCAATGGATAATTTtcatcatcatca 588 |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| Sbjct 483 ATTTGATCAACAACCAGCCATAGGTAAATTGCCTTCAATGGAGAATTTTCATCATCATCA 542 Query 589 tcatcaGATGATGATGATGGCTCCTTCAGTAAATTCACGGTCCAATAACATCGATAGCCC 648 ||| |||||||||| | |||||||||||||||| ||| |||||||||||||||| || Sbjct 543 TCA---GATGATGATG--G-CTCCTTCAGTAAATTCTCGGACCAATAACATCGATAGACC 596 Query 649 AAGCAACACAGGACGGGTTCTAGAAGGGTCACCGACTCTTGAACAATGGCACGGAGACAA 708 |||||||||||| | || ||||||| ||||||||||||||||| |||||||||||||| Sbjct 597 GAGCAACACAGGAAGAATTTTAGAAGGTTCACCGACTCTTGAACAGTGGCACGGAGACAA 656 Query 709 AGGATTGTTGTTAAGTAC-AAGTCATCATGAAGAGCAGCAGAAACTTGACTTGTCCCTCA 767 || | |||||||||| | || |||||||||||||||||||||||||||||||||||||| Sbjct 657 AG--T-GTTGTTAAGTTCTAA-TCATCATGAAGAGCAGCAGAAACTTGACTTGTCCCTCA 712 Query 768 AGCTTTGAGATTCTTTTTCTTGATTCTT 795 |||||||||||||||||||||||||||| Sbjct 713 AGCTTTGAGATTCTTTTTCTTGATTCTT 740 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35606804478 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5