BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25160.1
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942073 jgi|Araly1|942073|scaffold_602617.1 1061 0.0
> Ahg942073 jgi|Araly1|942073|scaffold_602617.1
Length=740
Score = 1061 bits (574), Expect = 0.0
Identities = 693/748 (93%), Gaps = 17/748 (2%)
Strand=Plus/Plus
Query 52 TCCCTTTTTAGCTCTCATGGACGCTTCAATAGTTTCCTCATCCACTGCTTTTCCATATCA 111
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 6 TCCCTTTTTAGCTCTCATGGACGCTTCCATAGTTTCCTCATCCACAGCTTTTCCATATCA 65
Query 112 AGATTCTCTAAACCAGAGCATCGAAGACGAAGA-AAGAGACGTTCATAATTCTAGTCACG 170
|||||||||||||||||||||| || ||||||| || |||||||||| || ||||||| |
Sbjct 66 AGATTCTCTAAACCAGAGCATCAAATACGAAGACAA-AGACGTTCATGATCCTAGTCAAG 124
Query 171 AACTCAATCTCATCGACTGCATAGACGACACAACGAGTATCGTTAACGAATCTACAACAT 230
|||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||
Sbjct 125 AACTCAATCTCATCGACTGCATAGACGATACAGCGAGTATCGTTAACGGATCTACAACAT 184
Query 231 CCACAGAACAAAAGCTTTTCTCATGCAACTATTGTCAAAGAACTTTCTATAGCTCACAAG 290
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 185 CCACAGAACAAAAGCTTTTTTCATGTAACTACTGTCAAAGAACTTTCTATAGCTCACAAG 244
Query 291 CACTTGGTGGTCACCAAAACGCACACAAGAGAGAGAGAACGTTGGCGAAGAGAGGACAAC 350
| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 245 CCCTTGGTGGACACCAAAACGCACACAAGAGAGAGAGGACGTTGGCGAAGAAAGGACAAC 304
Query 351 GTATGGCAGCGTCAGCCTCAGCTTTTGGACATCCTTACGGTTTCTCTCCACTTCCTTTCC 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 GTATGGCAGCGTCAGCCTCAGCTTTTGGACATCCTTACGGTTTCTCTCCACTTCCTTTCC 364
Query 411 ACGGAC-AGTACAACAACCA-TAGGTCTTTAGGGATCCAAGCGCATTCGATAAGCCACAA 468
|||||| | ||||||||| | ||||||||| ||||| |||||||||||||| ||||||||
Sbjct 365 ACGGACTA-TACAACAAC-AGTAGGTCTTTGGGGATTCAAGCGCATTCGATGAGCCACAA 422
Query 469 GCTAAGTTCTTATAACGGGTTTGGTGGTCACTATGGTCAGATCAACTGGTCAAGACTTCC 528
||||||||| |||| |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 423 GCTAAGTTCATATAGCGGGTTTGGTGGTCACTACGGTCAGGTCAACTGGTCAAGACTTCC 482
Query 529 ATTTGATCAACAACCAGCCATAGGTAAATTTCCCTCAATGGATAATTTtcatcatcatca 588
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 483 ATTTGATCAACAACCAGCCATAGGTAAATTGCCTTCAATGGAGAATTTTCATCATCATCA 542
Query 589 tcatcaGATGATGATGATGGCTCCTTCAGTAAATTCACGGTCCAATAACATCGATAGCCC 648
||| |||||||||| | |||||||||||||||| ||| |||||||||||||||| ||
Sbjct 543 TCA---GATGATGATG--G-CTCCTTCAGTAAATTCTCGGACCAATAACATCGATAGACC 596
Query 649 AAGCAACACAGGACGGGTTCTAGAAGGGTCACCGACTCTTGAACAATGGCACGGAGACAA 708
|||||||||||| | || ||||||| ||||||||||||||||| ||||||||||||||
Sbjct 597 GAGCAACACAGGAAGAATTTTAGAAGGTTCACCGACTCTTGAACAGTGGCACGGAGACAA 656
Query 709 AGGATTGTTGTTAAGTAC-AAGTCATCATGAAGAGCAGCAGAAACTTGACTTGTCCCTCA 767
|| | |||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 657 AG--T-GTTGTTAAGTTCTAA-TCATCATGAAGAGCAGCAGAAACTTGACTTGTCCCTCA 712
Query 768 AGCTTTGAGATTCTTTTTCTTGATTCTT 795
||||||||||||||||||||||||||||
Sbjct 713 AGCTTTGAGATTCTTTTTCTTGATTCTT 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35606804478
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5