BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25170.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942074 jgi|Araly1|942074|scaffold_602618.1 1112 0.0
Ahg489370 jgi|Araly1|489370|fgenesh2_kg.6__2504__AT5G25180.1 673 0.0
Ahg489366 jgi|Araly1|489366|fgenesh2_kg.6__2500__AT5G25130.1 612 2e-174
Ahg481377 jgi|Araly1|481377|fgenesh2_kg.4__437__AT2G25190.1 265 8e-70
> Ahg942074 jgi|Araly1|942074|scaffold_602618.1
Length=698
Score = 1112 bits (602), Expect = 0.0
Identities = 668/700 (95%), Gaps = 3/700 (0%)
Strand=Plus/Plus
Query 99 TCTTTCTTCTCTTAAAGAAAAGATGTTGTGTAGAATGGTGGTGGTGACTGGCCGGAAAAA 158
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTTCTTCTGTTAAAG-AAAGATGTTGTGTAGAATGGTGGTGGTGACTGGCCGGAAAAA 59
Query 159 GAAACCCGGTTCGGTTCCGGTTTATCTGAATGTATACGATCTCACACCCATCAATGGCTA 218
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 GAAACTCGGTTCGGTTCCGGTTTATCTGAATGTATACGATCTCACACCCATCAATGGTTA 119
Query 219 CGCTTACTGGTTAGGACTTGGGATCTATCACTCTGGTGTTGAAGTTCATGGAGTTGAATA 278
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TGCTTACTGGTTAGGACTTGGGATCTATCACTCTGGTGTTGAAGTTCATGGGGTTGAATA 179
Query 279 TGGTTTTGGAGCTCACGATCATTCGACTACCGGGATATTCGAGGTGGAACCGAAGCAATG 338
|||||| ||||||||||| |||||||| || ||||| ||||||||||| |||||||||||
Sbjct 180 TGGTTTCGGAGCTCACGAGCATTCGACAACGGGGATTTTCGAGGTGGAGCCGAAGCAATG 239
Query 339 TCCGGGTTTCACATTTAGGAAGTCTATATTGATTGGAAGAACTGATTTAGATCCTGAAAA 398
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 TCCGGGTTTTACATTCAGGAAGTCTATATTGATTGGAAGAACTGATTTGGATCCTGAAAA 299
Query 399 CGTTCGTGTC-TTTATGGAGAAACTTGCGGAAGAATATAGTGGAAACAGTTATCATTTGA 457
|||||||| | ||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 300 CGTTCGTG-CTTTTATGGAGAAACTTGCGGAAGAATATAGTGGAAACACTTACCATTTGA 358
Query 458 TTACTAAGAATTGCAATCACTTTTGCAATGATGTTTGTGTGCAACTGACTCGAAGATCGA 517
| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 359 TCACTAAGAATTGCAATCACTTCTGCAATGATGTTTGTGTGCAATTGACTCGAAGATCGA 418
Query 518 TCCCTAGTTGGGTTAACCGTCTTGCTCGCTTTGGTTTGTTTTGCAACTGTGTTCTGCCGG 577
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 419 TCCCTAGTTGGGTTAACCGTCTTGCTCGCTTCGGTTTGTTTTGCAATTGTGTTCTGCCGG 478
Query 578 CGGAGTTGAATGAGACTAAGGTGAGGCAGGTGAGATCAAAGGAAGAGAAGATTCCGGAAG 637
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGGAGCTGAATGAGACAAAGGTGAGGCAGGTGAGATCAAAGGAAGAGAAGATTCCGGAAG 538
Query 638 TAGAGAAGAAGAAACTTCGGAGTAGATCAAGTAGGTTTCCACCTGGTCCTTCGCTTTCTT 697
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 539 CAGAGAAGAAGAAACTTCGGAGTAGATCAAGTAGATTTCCACCTGGCCCTTCGCTTTCTT 598
Query 698 CGTCGGGTTCTTTAAACCGAAGCAGAAGAGGAGAAAGGAGAAGACAATGTCTTCCTCCAT 757
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 599 CATCGGGTTCTTTAAACCGAAGCAGAAGAGGGGAAAGGAGAAGACAATGTCTTCCTCCAT 658
Query 758 CACCAACTGTGAGTGTTTAGCTCTAGTCCTAGTAAAATTA 797
||||||||||||||||||||||||||||||||||| ||||
Sbjct 659 CACCAACTGTGAGTGTTTAGCTCTAGTCCTAGTAATATTA 698
> Ahg489370 jgi|Araly1|489370|fgenesh2_kg.6__2504__AT5G25180.1
Length=1469
Score = 673 bits (364), Expect = 0.0
Identities = 432/466 (93%), Gaps = 0/466 (0%)
Strand=Plus/Minus
Query 969 TCAAGTCCATTGGGTAAGGACTGGGATAAGTTGAAGTGGAACTTTCTTGGGACAAACAAG 1028
|||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 1469 TCAAGTCCATTGCGTAAGGACCGGGATAAGTTGAAGTGGGACTTTCTTAGGACAAACAAG 1410
Query 1029 TCCATATGATTCTTCAAGATCAACATCTTCTATGTTCATTCCTTCCGGAAGCTTCCAGTC 1088
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct 1409 TCCATATGATTCTTCAAGATCAACGTCTTCTACGTTCATTCCTTCCGGAAGCTTCCAATC 1350
Query 1089 GAAACGGTAAAGAAGATTGATAAGAGTCAAGTGTACCAATGCCATACCTAATCCCATACC 1148
||| ||||||||||||||||||||||||||||||| ||| |||||||| | |||||||||
Sbjct 1349 GAATCGGTAAAGAAGATTGATAAGAGTCAAGTGTATCAAAGCCATACCCATTCCCATACC 1290
Query 1149 AGGGCACATTCTCCTTCCGCTACCAAACGGCAGCAACTCAAAGTCTACACCTTTATAGTC 1208
|||||||||||| ||||| |||||||| |||| ||||||||||| || |||||| |||||
Sbjct 1289 AGGGCACATTCTTCTTCCACTACCAAATGGCAACAACTCAAAGTTTAGACCTTTGTAGTC 1230
Query 1209 AATCTCGCTATGCATAAACCTCTCTGGGATGAAAACTTCTGGATCTTTCCAAACATTTGG 1268
||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct 1229 AATCTCGCTATCCATAAACCTCTCGGGGATGAAAGCTTCTGGATCTTTCCAAACGTTTGA 1170
Query 1269 ATTCCTTTGAACAGCCCATATGTTGACATAAATCCATGTTTTCTTTGGAATGTCGTAACC 1328
|||||| |||| |||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 1169 ATTCCTATGAATAGCCCATACGTTGACATAAATCCATGTTTTCTTTGGAATGTCATAGCC 1110
Query 1329 TCCAATCTTTATATATTTTGAAGCCTCTCTTGGAATCAGAAGTGGCACAAGTGGGTTGAT 1388
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1109 TCCAATCTCTATATCTTTTGAAGCCTCTCTTGGAATCAGAAGTGGCACAAGTGGGTTTAT 1050
Query 1389 CCTTAATGTTTCTTTAATCACCATTTTCAAATATTCGAGTCGTTCT 1434
||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1049 CCTTAATGTTTCTTTAATCACCATTTTCAAATACTCAAGTCGTTCT 1004
> Ahg489366 jgi|Araly1|489366|fgenesh2_kg.6__2500__AT5G25130.1
Length=1589
Score = 612 bits (331), Expect = 2e-174
Identities = 425/470 (90%), Gaps = 8/470 (2%)
Strand=Plus/Minus
Query 969 TCAAGTCCATTGGGTAAGGACTGGGATAAGTTGAAGTGGAACTTTCTTGGGACAAACAAG 1028
||||||||||||||||||||| |||||||| |||||||| |||||||| ||||| |||||
Sbjct 1499 TCAAGTCCATTGGGTAAGGACCGGGATAAGCTGAAGTGGGACTTTCTTAGGACATACAAG 1440
Query 1029 TCCATATGATTCTTCAAGATCAACATCTTCTATGTTCATTCCTTCCGGAAGCTTCCAGTC 1088
|||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||
Sbjct 1439 TCCATATGATTCTTCAAGATCAACATCTTCTACCTCCATTCCTTCTGGAAGCTTCCAATC 1380
Query 1089 GAAA-CGGTAAAGAAGATTGATAAGAGTCAAGTGTACCAATGCCATACCTAATCCCATAC 1147
||| ||||| |||||||||||||||||||| |||||||| |||||||| | ||| ||||
Sbjct 1379 -AAATCGGTAGAGAAGATTGATAAGAGTCAAATGTACCAAAGCCATACCCATTCCTATAC 1321
Query 1148 CAGGGCACATTCTCCTTCCGCTACCAAACGGCAGCAACTCAAAG-TCTACACCTTTATAG 1206
||||||||||||||||||| ||||||||||||| | ||||||| || | |||||| |||
Sbjct 1320 CAGGGCACATTCTCCTTCCACTACCAAACGGCAATAGCTCAAAGTTC-AAACCTTTGTAG 1262
Query 1207 TCAATCTCGCTATGCATAAACCTCTCTGGGATGAAA-ACTTCTGGATCTTTCCAAACATT 1265
||||||||||||| ||||||||| || ||||||||| | |||||||||||||||||| ||
Sbjct 1261 TCAATCTCGCTATCCATAAACCTTTCGGGGATGAAAGA-TTCTGGATCTTTCCAAACGTT 1203
Query 1266 TGGATTCCTTTGAACAGCCCATATGTTGACATAAATCCATGTTTTCTTTGGAATGTCGTA 1325
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1202 TGGATTCCTCTGAAGAGCCCATATGTTGACATAAATCCATGTTTTCTTTGGAATGTCATA 1143
Query 1326 ACCTCCAATCTTTATATATTTTGAAGCCTCTCTTGGAATCAGAAGTGGCACAAG-TGGGT 1384
|||||||||| ||||| |||||||||||||||||||||||||| ||||| | | ||| |
Sbjct 1142 GCCTCCAATCTCTATATCTTTTGAAGCCTCTCTTGGAATCAGAAATGGCAGA-GCTGGAT 1084
Query 1385 TGATCCTTAATGTTTCTTTAATCACCATTTTCAAATATTCGAGTCGTTCT 1434
| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1083 TTATCCTTAATGTTTCTTTAATCACCATTTTCAAATACTCGAGTCGTTCT 1034
> Ahg481377 jgi|Araly1|481377|fgenesh2_kg.4__437__AT2G25190.1
Length=1185
Score = 265 bits (143), Expect = 8e-70
Identities = 403/522 (77%), Gaps = 44/522 (8%)
Strand=Plus/Plus
Query 151 CGGAAAAAGAAACCCGGTTCGGTTCCGGTTTATCTGAATGTATACGATCTCACACCCATC 210
||||| ||| || ||||||| |||||||||||||||||||| |||||||| || || ||
Sbjct 253 CGGAAGAAGCAATCCGGTTCTGTTCCGGTTTATCTGAATGTCTACGATCTAACTCCTATG 312
Query 211 AATGGC-TACGCTTACTGG-TTAGGACTTGG-GATCTATCACTCTGGTGTTGAAGTTCAT 267
||| || || | ||| ||| || |||||||| | | | ||| ||||||||||||||||||
Sbjct 313 AAT-GCTTATGGTTATTGGCTT-GGACTTGGTG-TTTTTCATTCTGGTGTTGAAGTTCAT 369
Query 268 GGAGTTGAATATGGTTTTGGAGCTCACGA-TCATTCGA-CTACCGGGATATTCGAGGTGG 325
||||||||||||| |||||||| || || |||| | | | || || ||||| || ||||
Sbjct 370 GGAGTTGAATATGCATTTGGAGCACATGAATCAT-CAAGC-ACAGGTATATTTGAAGTGG 427
Query 326 AACCGAAGCAA-TGTCCGGGTTTCACATTTAGGAAGTCTATA-TTGATTGG-AAGAACTG 382
| || ||| || ||||| |||||||| |||||||| || || ||| | || || ||| |
Sbjct 428 AGCCAAAG-AAGTGTCCCGGTTTCACGTTTAGGAAATCGATTCTTG-TGGGGAA-AACCG 484
Query 383 ATTTAGATCCTGAAA-ACGTTCGTGTCTTTATGGAGAAACTT-GCGGAAGAATAT-AGTG 439
| || | | | |||| | ||||| ||||||||||||||| || || ||||| ||| | |
Sbjct 485 ACTTGGTTGC-GAAAGAAGTTCGAGTCTTTATGGAGAAA-TTAGCTGAAGAGTATCAA-G 541
Query 440 GAAACA-GTTATCATTTGATTACTAAGAAT-TGCAATCACTTTTGCAATGATGTTTGTGT 497
|||||| || | ||| | || || ||||| ||||| || ||||||||||| |||||| |
Sbjct 542 GAAACAAGT-ACCATCTCATCAC-AAGAAACTGCAACCATTTTTGCAATGAAGTTTGTCT 599
Query 498 GCAACTGACTC-GAAGATCGATCCCTAGTTGGGTTAACCGTCTTGCTCGCTTTGGT-TTG 555
|||| |||| ||| ||| || ||||| ||||| ||||| ||||||||||| || ||
Sbjct 600 TAAACTTACTCAGAA-ATCAATACCTAGATGGGTGAACCGACTTGCTCGCTTAGGGGTTC 658
Query 556 TTTTGCAACTGTGT-TCTGCCGGCGGAGTT-GAATGAGACTAAGGTGAGGCAGGTGAG-A 612
| | |||| ||||| | | || || ||| ||| ||| | || ||||||| ||| || |
Sbjct 659 TCT-GCAATTGTGTGT-TACCACCGC-GTTTGAACGAGGCAAAAGTGAGGCGGGT-AGGA 714
Query 613 TCAAAGGAAGAGAAGATTCCGGA-AGTAGAGAAGAAGAAACT 653
|||||| ||| || |||| ||| ||||||||||||||
Sbjct 715 --AAAGGA-GAGC---TTACGGAGAGT-GAGAAGAAGAAACT 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5