BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25170.1 Length=1434 Score E Sequences producing significant alignments: (Bits) Value Ahg942074 jgi|Araly1|942074|scaffold_602618.1 1112 0.0 Ahg489370 jgi|Araly1|489370|fgenesh2_kg.6__2504__AT5G25180.1 673 0.0 Ahg489366 jgi|Araly1|489366|fgenesh2_kg.6__2500__AT5G25130.1 612 2e-174 Ahg481377 jgi|Araly1|481377|fgenesh2_kg.4__437__AT2G25190.1 265 8e-70 > Ahg942074 jgi|Araly1|942074|scaffold_602618.1 Length=698 Score = 1112 bits (602), Expect = 0.0 Identities = 668/700 (95%), Gaps = 3/700 (0%) Strand=Plus/Plus Query 99 TCTTTCTTCTCTTAAAGAAAAGATGTTGTGTAGAATGGTGGTGGTGACTGGCCGGAAAAA 158 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTTTCTTCTGTTAAAG-AAAGATGTTGTGTAGAATGGTGGTGGTGACTGGCCGGAAAAA 59 Query 159 GAAACCCGGTTCGGTTCCGGTTTATCTGAATGTATACGATCTCACACCCATCAATGGCTA 218 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 60 GAAACTCGGTTCGGTTCCGGTTTATCTGAATGTATACGATCTCACACCCATCAATGGTTA 119 Query 219 CGCTTACTGGTTAGGACTTGGGATCTATCACTCTGGTGTTGAAGTTCATGGAGTTGAATA 278 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 120 TGCTTACTGGTTAGGACTTGGGATCTATCACTCTGGTGTTGAAGTTCATGGGGTTGAATA 179 Query 279 TGGTTTTGGAGCTCACGATCATTCGACTACCGGGATATTCGAGGTGGAACCGAAGCAATG 338 |||||| ||||||||||| |||||||| || ||||| ||||||||||| ||||||||||| Sbjct 180 TGGTTTCGGAGCTCACGAGCATTCGACAACGGGGATTTTCGAGGTGGAGCCGAAGCAATG 239 Query 339 TCCGGGTTTCACATTTAGGAAGTCTATATTGATTGGAAGAACTGATTTAGATCCTGAAAA 398 ||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 240 TCCGGGTTTTACATTCAGGAAGTCTATATTGATTGGAAGAACTGATTTGGATCCTGAAAA 299 Query 399 CGTTCGTGTC-TTTATGGAGAAACTTGCGGAAGAATATAGTGGAAACAGTTATCATTTGA 457 |||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 300 CGTTCGTG-CTTTTATGGAGAAACTTGCGGAAGAATATAGTGGAAACACTTACCATTTGA 358 Query 458 TTACTAAGAATTGCAATCACTTTTGCAATGATGTTTGTGTGCAACTGACTCGAAGATCGA 517 | |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 359 TCACTAAGAATTGCAATCACTTCTGCAATGATGTTTGTGTGCAATTGACTCGAAGATCGA 418 Query 518 TCCCTAGTTGGGTTAACCGTCTTGCTCGCTTTGGTTTGTTTTGCAACTGTGTTCTGCCGG 577 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 419 TCCCTAGTTGGGTTAACCGTCTTGCTCGCTTCGGTTTGTTTTGCAATTGTGTTCTGCCGG 478 Query 578 CGGAGTTGAATGAGACTAAGGTGAGGCAGGTGAGATCAAAGGAAGAGAAGATTCCGGAAG 637 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CGGAGCTGAATGAGACAAAGGTGAGGCAGGTGAGATCAAAGGAAGAGAAGATTCCGGAAG 538 Query 638 TAGAGAAGAAGAAACTTCGGAGTAGATCAAGTAGGTTTCCACCTGGTCCTTCGCTTTCTT 697 ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 539 CAGAGAAGAAGAAACTTCGGAGTAGATCAAGTAGATTTCCACCTGGCCCTTCGCTTTCTT 598 Query 698 CGTCGGGTTCTTTAAACCGAAGCAGAAGAGGAGAAAGGAGAAGACAATGTCTTCCTCCAT 757 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 599 CATCGGGTTCTTTAAACCGAAGCAGAAGAGGGGAAAGGAGAAGACAATGTCTTCCTCCAT 658 Query 758 CACCAACTGTGAGTGTTTAGCTCTAGTCCTAGTAAAATTA 797 ||||||||||||||||||||||||||||||||||| |||| Sbjct 659 CACCAACTGTGAGTGTTTAGCTCTAGTCCTAGTAATATTA 698 > Ahg489370 jgi|Araly1|489370|fgenesh2_kg.6__2504__AT5G25180.1 Length=1469 Score = 673 bits (364), Expect = 0.0 Identities = 432/466 (93%), Gaps = 0/466 (0%) Strand=Plus/Minus Query 969 TCAAGTCCATTGGGTAAGGACTGGGATAAGTTGAAGTGGAACTTTCTTGGGACAAACAAG 1028 |||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| Sbjct 1469 TCAAGTCCATTGCGTAAGGACCGGGATAAGTTGAAGTGGGACTTTCTTAGGACAAACAAG 1410 Query 1029 TCCATATGATTCTTCAAGATCAACATCTTCTATGTTCATTCCTTCCGGAAGCTTCCAGTC 1088 |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || Sbjct 1409 TCCATATGATTCTTCAAGATCAACGTCTTCTACGTTCATTCCTTCCGGAAGCTTCCAATC 1350 Query 1089 GAAACGGTAAAGAAGATTGATAAGAGTCAAGTGTACCAATGCCATACCTAATCCCATACC 1148 ||| ||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||| Sbjct 1349 GAATCGGTAAAGAAGATTGATAAGAGTCAAGTGTATCAAAGCCATACCCATTCCCATACC 1290 Query 1149 AGGGCACATTCTCCTTCCGCTACCAAACGGCAGCAACTCAAAGTCTACACCTTTATAGTC 1208 |||||||||||| ||||| |||||||| |||| ||||||||||| || |||||| ||||| Sbjct 1289 AGGGCACATTCTTCTTCCACTACCAAATGGCAACAACTCAAAGTTTAGACCTTTGTAGTC 1230 Query 1209 AATCTCGCTATGCATAAACCTCTCTGGGATGAAAACTTCTGGATCTTTCCAAACATTTGG 1268 ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| |||| Sbjct 1229 AATCTCGCTATCCATAAACCTCTCGGGGATGAAAGCTTCTGGATCTTTCCAAACGTTTGA 1170 Query 1269 ATTCCTTTGAACAGCCCATATGTTGACATAAATCCATGTTTTCTTTGGAATGTCGTAACC 1328 |||||| |||| |||||||| ||||||||||||||||||||||||||||||||| || || Sbjct 1169 ATTCCTATGAATAGCCCATACGTTGACATAAATCCATGTTTTCTTTGGAATGTCATAGCC 1110 Query 1329 TCCAATCTTTATATATTTTGAAGCCTCTCTTGGAATCAGAAGTGGCACAAGTGGGTTGAT 1388 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 1109 TCCAATCTCTATATCTTTTGAAGCCTCTCTTGGAATCAGAAGTGGCACAAGTGGGTTTAT 1050 Query 1389 CCTTAATGTTTCTTTAATCACCATTTTCAAATATTCGAGTCGTTCT 1434 ||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1049 CCTTAATGTTTCTTTAATCACCATTTTCAAATACTCAAGTCGTTCT 1004 > Ahg489366 jgi|Araly1|489366|fgenesh2_kg.6__2500__AT5G25130.1 Length=1589 Score = 612 bits (331), Expect = 2e-174 Identities = 425/470 (90%), Gaps = 8/470 (2%) Strand=Plus/Minus Query 969 TCAAGTCCATTGGGTAAGGACTGGGATAAGTTGAAGTGGAACTTTCTTGGGACAAACAAG 1028 ||||||||||||||||||||| |||||||| |||||||| |||||||| ||||| ||||| Sbjct 1499 TCAAGTCCATTGGGTAAGGACCGGGATAAGCTGAAGTGGGACTTTCTTAGGACATACAAG 1440 Query 1029 TCCATATGATTCTTCAAGATCAACATCTTCTATGTTCATTCCTTCCGGAAGCTTCCAGTC 1088 |||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| || Sbjct 1439 TCCATATGATTCTTCAAGATCAACATCTTCTACCTCCATTCCTTCTGGAAGCTTCCAATC 1380 Query 1089 GAAA-CGGTAAAGAAGATTGATAAGAGTCAAGTGTACCAATGCCATACCTAATCCCATAC 1147 ||| ||||| |||||||||||||||||||| |||||||| |||||||| | ||| |||| Sbjct 1379 -AAATCGGTAGAGAAGATTGATAAGAGTCAAATGTACCAAAGCCATACCCATTCCTATAC 1321 Query 1148 CAGGGCACATTCTCCTTCCGCTACCAAACGGCAGCAACTCAAAG-TCTACACCTTTATAG 1206 ||||||||||||||||||| ||||||||||||| | ||||||| || | |||||| ||| Sbjct 1320 CAGGGCACATTCTCCTTCCACTACCAAACGGCAATAGCTCAAAGTTC-AAACCTTTGTAG 1262 Query 1207 TCAATCTCGCTATGCATAAACCTCTCTGGGATGAAA-ACTTCTGGATCTTTCCAAACATT 1265 ||||||||||||| ||||||||| || ||||||||| | |||||||||||||||||| || Sbjct 1261 TCAATCTCGCTATCCATAAACCTTTCGGGGATGAAAGA-TTCTGGATCTTTCCAAACGTT 1203 Query 1266 TGGATTCCTTTGAACAGCCCATATGTTGACATAAATCCATGTTTTCTTTGGAATGTCGTA 1325 ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 1202 TGGATTCCTCTGAAGAGCCCATATGTTGACATAAATCCATGTTTTCTTTGGAATGTCATA 1143 Query 1326 ACCTCCAATCTTTATATATTTTGAAGCCTCTCTTGGAATCAGAAGTGGCACAAG-TGGGT 1384 |||||||||| ||||| |||||||||||||||||||||||||| ||||| | | ||| | Sbjct 1142 GCCTCCAATCTCTATATCTTTTGAAGCCTCTCTTGGAATCAGAAATGGCAGA-GCTGGAT 1084 Query 1385 TGATCCTTAATGTTTCTTTAATCACCATTTTCAAATATTCGAGTCGTTCT 1434 | ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1083 TTATCCTTAATGTTTCTTTAATCACCATTTTCAAATACTCGAGTCGTTCT 1034 > Ahg481377 jgi|Araly1|481377|fgenesh2_kg.4__437__AT2G25190.1 Length=1185 Score = 265 bits (143), Expect = 8e-70 Identities = 403/522 (77%), Gaps = 44/522 (8%) Strand=Plus/Plus Query 151 CGGAAAAAGAAACCCGGTTCGGTTCCGGTTTATCTGAATGTATACGATCTCACACCCATC 210 ||||| ||| || ||||||| |||||||||||||||||||| |||||||| || || || Sbjct 253 CGGAAGAAGCAATCCGGTTCTGTTCCGGTTTATCTGAATGTCTACGATCTAACTCCTATG 312 Query 211 AATGGC-TACGCTTACTGG-TTAGGACTTGG-GATCTATCACTCTGGTGTTGAAGTTCAT 267 ||| || || | ||| ||| || |||||||| | | | ||| |||||||||||||||||| Sbjct 313 AAT-GCTTATGGTTATTGGCTT-GGACTTGGTG-TTTTTCATTCTGGTGTTGAAGTTCAT 369 Query 268 GGAGTTGAATATGGTTTTGGAGCTCACGA-TCATTCGA-CTACCGGGATATTCGAGGTGG 325 ||||||||||||| |||||||| || || |||| | | | || || ||||| || |||| Sbjct 370 GGAGTTGAATATGCATTTGGAGCACATGAATCAT-CAAGC-ACAGGTATATTTGAAGTGG 427 Query 326 AACCGAAGCAA-TGTCCGGGTTTCACATTTAGGAAGTCTATA-TTGATTGG-AAGAACTG 382 | || ||| || ||||| |||||||| |||||||| || || ||| | || || ||| | Sbjct 428 AGCCAAAG-AAGTGTCCCGGTTTCACGTTTAGGAAATCGATTCTTG-TGGGGAA-AACCG 484 Query 383 ATTTAGATCCTGAAA-ACGTTCGTGTCTTTATGGAGAAACTT-GCGGAAGAATAT-AGTG 439 | || | | | |||| | ||||| ||||||||||||||| || || ||||| ||| | | Sbjct 485 ACTTGGTTGC-GAAAGAAGTTCGAGTCTTTATGGAGAAA-TTAGCTGAAGAGTATCAA-G 541 Query 440 GAAACA-GTTATCATTTGATTACTAAGAAT-TGCAATCACTTTTGCAATGATGTTTGTGT 497 |||||| || | ||| | || || ||||| ||||| || ||||||||||| |||||| | Sbjct 542 GAAACAAGT-ACCATCTCATCAC-AAGAAACTGCAACCATTTTTGCAATGAAGTTTGTCT 599 Query 498 GCAACTGACTC-GAAGATCGATCCCTAGTTGGGTTAACCGTCTTGCTCGCTTTGGT-TTG 555 |||| |||| ||| ||| || ||||| ||||| ||||| ||||||||||| || || Sbjct 600 TAAACTTACTCAGAA-ATCAATACCTAGATGGGTGAACCGACTTGCTCGCTTAGGGGTTC 658 Query 556 TTTTGCAACTGTGT-TCTGCCGGCGGAGTT-GAATGAGACTAAGGTGAGGCAGGTGAG-A 612 | | |||| ||||| | | || || ||| ||| ||| | || ||||||| ||| || | Sbjct 659 TCT-GCAATTGTGTGT-TACCACCGC-GTTTGAACGAGGCAAAAGTGAGGCGGGT-AGGA 714 Query 613 TCAAAGGAAGAGAAGATTCCGGA-AGTAGAGAAGAAGAAACT 653 |||||| ||| || |||| ||| |||||||||||||| Sbjct 715 --AAAGGA-GAGC---TTACGGAGAGT-GAGAAGAAGAAACT 749 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53631064960 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5