BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25180.1
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489366 jgi|Araly1|489366|fgenesh2_kg.6__2500__AT5G25130.1 1716 0.0
Ahg489370 jgi|Araly1|489370|fgenesh2_kg.6__2504__AT5G25180.1 1397 0.0
> Ahg489366 jgi|Araly1|489366|fgenesh2_kg.6__2500__AT5G25130.1
Length=1589
Score = 1716 bits (929), Expect = 0.0
Identities = 1328/1518 (87%), Gaps = 37/1518 (2%)
Strand=Plus/Plus
Query 66 GAAGACAAAATGA-TTTGGTGGTTTATCGTTGGTGCATCCTTTTTCTTTGCATT-TATAC 123
|||| |||||||| ||| ||||| |||| ||| ||||| | | |||||| | || ||||
Sbjct 1 GAAG-CAAAATGAGTTT-GTGGTATATCATTGTTGCATTCGTCTTCTTTTC-TTCTATAA 57
Query 124 TCATTGCAAAGG-ACACGAGAACAACAAAAAAGAATCTACCTCCAGGACCACCAAGACTT 182
|||||| |||| |||||||||| ||||| | |||||||||||| |||||||||||||||
Sbjct 58 TCATTG-TAAGGAACACGAGAACGACAAAGACGAATCTACCTCCTGGACCACCAAGACTT 116
Query 183 CCTATAATTGGAAACTTGCACCAATTGGGATCAAAACCTCAGCGTTC-ACTATTCAAATT 241
||||||||||| ||||| |||||||||||||| |||||||| ||||| | | ||||| ||
Sbjct 117 CCTATAATTGGTAACTTACACCAATTGGGATCCAAACCTCATCGTTCGA-TGTTCAAGTT 175
Query 242 ATCTGAAAAGTATGGATC-TCTAATGTCTCTAAAGTTTGGAAATGTGTCTGCTGTTGTGG 300
||| |||||||||||||| | |||||||| | |||||||| ||||||||| |||||||||
Sbjct 176 ATCCGAAAAGTATGGATCGT-TAATGTCTTTGAAGTTTGGGAATGTGTCTACTGTTGTGG 234
Query 301 CATCAACTCCAGAGACGGTGAAGGATGTCTTAAAAACATTCGACGCAGAGTGTTGTTCCC 360
|||| || |||||||| |||||||| |||||||||||||| |||| ||| |||||||| |
Sbjct 235 CATCTACACCAGAGACAGTGAAGGAAGTCTTAAAAACATTTGACGTAGAATGTTGTTCGC 294
Query 361 GACCTTATATGACTTATCCCGCAAGAGTTACATACAATTTTAACGATCTC-GCATTTTCG 419
|||| |||||||||||||| |||||| ||||||||||||| || |||||| || |||||
Sbjct 295 GACCATATATGACTTATCCTGCAAGATTTACATACAATTTAAAAGATCTCGGC-TTTTCT 353
Query 420 CCCTATAGCAAATATTGGAGGGAAGTACGAAAGATGACGGTCATTGAGCTATACACCGCG 479
|||||||||||||||||||| || |||||||||||||| || |||| || ||||||||
Sbjct 354 CCCTATAGCAAATATTGGAGAGAGGTACGAAAGATGACTGTTGTTGAACTCTACACCGCA 413
Query 480 AAAAGGGTCAAATCGTTTCAAAATGTAAGACAAGAAGAAGTTGCCTCATTCGTTGATTTC 539
||||| || ||||| |||||| | |||| ||||||||||||| || |||||||||||
Sbjct 414 AAAAGAGTGAAATCATTTCAACACACAAGAAAAGAAGAAGTTGCTTCCCTCGTTGATTTC 473
Query 540 ATCAAACAA-CATGCTTCATTGGAGAAAACAGTTAA-TATGAAAC-AGAAGTTAGTGAAA 596
|||||||| | ||| |||||||||||| | ||||| | || ||| | |||||| |||||
Sbjct 474 TTCAAACAAGC-TGCGTCATTGGAGAAATCGGTTAACT-TG-AACAATAAGTTAATGAAA 530
Query 597 CTCTCTGGGAGTGTGATTTGTAAAGTTGGATTTGGCAT-AAGTCTTGAATGG-AGCAAAC 654
|| | || ||||||||||||| ||||| |||||| || || |||| || || || || |
Sbjct 531 CTAGCAGGAAGTGTGATTTGTAGAGTTGCATTTGGTATCAA-TCTT-AAAGGAAGTAAGC 588
Query 655 TTGCGAATACTTATGAGGAAGTCATTCAAGGAACCATGGAGGTGGTGGGGCGTTTCGCAG 714
||| |||||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct 589 TTGAGAATACTTATGAGGAAGTCATTCAAGGAACTATAGAGGTGGTGGGGAGTTTCGCAG 648
Query 715 CAGCGGATTACTTCCCGATTATTGGTAGAATCATCGATAGGATCACGGGGTTACATAGCA 774
|||| |||||||||||| | ||||||||||| |||||||||||||| |||||||||||||
Sbjct 649 CAGCAGATTACTTCCCGGTCATTGGTAGAATTATCGATAGGATCACAGGGTTACATAGCA 708
Query 775 AATGTGAGAAGGTTTTTAAGGAAATGGATTCGTTTTTTGATCAATCTATAAAGCATCACC 834
||||||||||| ||| |||| ||||||| | ||||||||||||||||||||||||||||
Sbjct 709 AATGTGAGAAGAATTTCAAGGCAATGGATGCATTTTTTGATCAATCTATAAAGCATCACC 768
Query 835 TAGAAGAT-ACTAATATCAAAGACGATATCATTGGTTTGCTACTAAAGATGGAAAAGGGA 893
|||||||| | | ||| ||||| |||||||||| ||||| || |||||||||| ||||
Sbjct 769 TAGAAGATGA-GAGTATTAAAGATGATATCATTGACTTGCTCCTCAAGATGGAAAGGGGA 827
Query 894 GAGACAGGACTTGGAGAGTTTCAACTTACACGAAACCACACTAAAGGAATTCTTCTAAAC 953
|||| |||||||| |||||||||||||| ||| ||||||| |||||||||||| | ||
Sbjct 828 GAGATTGGACTTGGGGAGTTTCAACTTACTCGAGACCACACCAAAGGAATTCTTTTCAAT 887
Query 954 GTTCTTATCGCTGGAGTGGACACTTCTGGCCAC-ACT-GTGACATGGGTGATGACACATT 1011
|||||| ||||||| | |||||| || | ||| | | |||||||||||||||||||||
Sbjct 888 ATTCTTAACGCTGGAATAGACACTACT-G-CACAAGTCATGACATGGGTGATGACACATT 945
Query 1012 TGATTAAAAACCCAAGAGTTATGAAGAAAGCGCAAGCCGAGGTAAGAGAAGTGATCAAAA 1071
||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 946 TGATTAAAAACCCAAGAATTCTGAAGAAAGCGCAAGCCGAGGTGAGAGAAGTGATCAAAA 1005
Query 1072 ACAAAGATGATATCACAGAAGAAGATATAGAACGACTCGAATATTTGAAAATGGTGATTA 1131
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1006 ACAAAGATGATATCACAGAAGAAGATATAGAACGACTCGAGTATTTGAAAATGGTGATTA 1065
Query 1132 AAGAAACATTAAGGATCAACCCA-CTTGTGCCACTTCTGATTCCAAGAGAGGCTTCAAAA 1190
|||||||||||||||| || ||| || ||||| ||||||||||||||||||||||||||
Sbjct 1066 AAGAAACATTAAGGATAAATCCAGCTC-TGCCATTTCTGATTCCAAGAGAGGCTTCAAAA 1124
Query 1191 TATATAAAGATTGGAGGTTACGACATTCCAAAGAAAACATGGATTTATGTCAACATATGG 1250
||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1125 GATATAGAGATTGGAGGCTATGACATTCCAAAGAAAACATGGATTTATGTCAACATATGG 1184
Query 1251 GCTGTTCAAAGGAATCCAAATGTTTGGAAAGATCCAGAAGT-TTTCATCCCAGAGAGGTT 1309
||| |||| ||||||||||| |||||||||||||||||| | ||||||||| || |||||
Sbjct 1185 GCTCTTCAGAGGAATCCAAACGTTTGGAAAGATCCAGAA-TCTTTCATCCCCGAAAGGTT 1243
Query 1310 TATGCATAGCGAGATTGACTATAAAGGTGTAGA-CTTTGAGTTGCTGCCGTTTGGTAGCG 1368
|||| |||||||||||||||| |||||| | || ||||||| | ||||||||||||| |
Sbjct 1244 TATGGATAGCGAGATTGACTACAAAGGTTT-GAACTTTGAGCTATTGCCGTTTGGTAGTG 1302
Query 1369 GAAGGAGAATGTGCCCTGGTATGGGATTAGGTATGGCATTGGTACACTTGACTCTTATCA 1428
|||||||||||||||||||||| ||| | |||||||| |||||||| |||||||||||||
Sbjct 1303 GAAGGAGAATGTGCCCTGGTATAGGAATGGGTATGGCTTTGGTACATTTGACTCTTATCA 1362
Query 1429 ATCTTCTTTACCG-TTTCGACTGGAAGCTTCCGGAAGGAATGAACATAGAAGATGTTGAT 1487
||||||| ||||| ||| || ||||||||||| ||||||||| | ||||||||||||||
Sbjct 1363 ATCTTCTCTACCGATTT-GATTGGAAGCTTCCAGAAGGAATGGAGGTAGAAGATGTTGAT 1421
Query 1488 CTTGAAGAATCATATGGACTTGTTTGTCCCAAGAAAGTTCCACTTCAACTTATCCCAGTC 1547
||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||| |||
Sbjct 1422 CTTGAAGAATCATATGGACTTGTATGTCCTAAGAAAGTCCCACTTCAGCTTATCCCGGTC 1481
Query 1548 CTTACCCAATGGACTTGA 1565
||||||||||||||||||
Sbjct 1482 CTTACCCAATGGACTTGA 1499
> Ahg489370 jgi|Araly1|489370|fgenesh2_kg.6__2504__AT5G25180.1
Length=1469
Score = 1397 bits (756), Expect = 0.0
Identities = 884/948 (93%), Gaps = 0/948 (0%)
Strand=Plus/Plus
Query 618 AAAGTTGGATTTGGCATAAGTCTTGAATGGAGCAAACTTGCGAATACTTATGAGGAAGTC 677
||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct 522 AAAGTTGGATTTGGCATAAATCTCGAAGGGAGCAAACTTGCGAATACTTATGAGGAAGTT 581
Query 678 ATTCAAGGAACCATGGAGGTGGTGGGGCGTTTCGCAGCAGCGGATTACTTCCCGATTATT 737
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 582 ATTCAAGGAACCATGGAGGTGGTGGGAAGTTTCGCAGCAGCGGATTACTTCCCGATTATT 641
Query 738 GGTAGAATCATCGATAGGATCACGGGGTTACATAGCAAATGTGAGAAGGTTTTTAAGGAA 797
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
Sbjct 642 GGTAGAATCATCGATAGGATCACGGGGTTACATAGCAAATGCGAGACGGTTTTTAAGTCA 701
Query 798 ATGGATTCGTTTTTTGATCAATCTATAAAGCATCACCTAGAAGATACTAATATCAAAGAC 857
|||||||||||||| ||| |||||||||||| ||||||||||||| ||||||| |||||
Sbjct 702 ATGGATTCGTTTTTCGATGAATCTATAAAGCGTCACCTAGAAGATGCTAATATTAAAGAT 761
Query 858 GATATCATTGGTTTGCTACTAAAGATGGAAAAGGGAGAGACAGGACTTGGAGAGTTTCAA 917
|||||||||| ||||| || |||||||||| |||||||| ||||||||||||||||||
Sbjct 762 GATATCATTGACTTGCTCCTCAAGATGGAAAGGGGAGAGATGGGACTTGGAGAGTTTCAA 821
Query 918 CTTACACGAAACCACACTAAAGGAATTCTTCTAAACGTTCTTATCGCTGGAGTGGACACT 977
||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 822 CTTACACGAAACCACACCAAAGGAATTCTTCTGAACGTTCTTATTGCTGGAGTTGACACT 881
Query 978 TCTGGCCACACTGTGACATGGGTGATGACACATTTGATTAAAAACCCAAGAGTTATGAAG 1037
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 882 TCTGGCCACACTGTGACATGGGTGATGACACATTTGATTAAAAACCCAAGAGTTCTGAAG 941
Query 1038 AAAGCGCAAGCCGAGGTAAGAGAAGTGATCAAAAACAAAGATGATATCACAGAAGAAGAT 1097
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 942 AAAGCGCAAGCCGAGGTGAGAGAAGTGATCAAAAACAAAGATGATATCGCAGAAGAAGAT 1001
Query 1098 ATAGAACGACTCGAATATTTGAAAATGGTGATTAAAGAAACATTAAGGATCAACCCACTT 1157
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1002 ATAGAACGACTTGAGTATTTGAAAATGGTGATTAAAGAAACATTAAGGATAAACCCACTT 1061
Query 1158 GTGCCACTTCTGATTCCAAGAGAGGCTTCAAAATATATAAAGATTGGAGGTTACGACATT 1217
||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||||||
Sbjct 1062 GTGCCACTTCTGATTCCAAGAGAGGCTTCAAAAGATATAGAGATTGGAGGCTATGACATT 1121
Query 1218 CCAAAGAAAACATGGATTTATGTCAACATATGGGCTGTTCAAAGGAATCCAAATGTTTGG 1277
||||||||||||||||||||||||||| |||||||| |||| |||||| |||| ||||||
Sbjct 1122 CCAAAGAAAACATGGATTTATGTCAACGTATGGGCTATTCATAGGAATTCAAACGTTTGG 1181
Query 1278 AAAGATCCAGAAGTTTTCATCCCAGAGAGGTTTATGCATAGCGAGATTGACTATAAAGGT 1337
||||||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||
Sbjct 1182 AAAGATCCAGAAGCTTTCATCCCCGAGAGGTTTATGGATAGCGAGATTGACTACAAAGGT 1241
Query 1338 GTAGACTTTGAGTTGCTGCCGTTTGGTAGCGGAAGGAGAATGTGCCCTGGTATGGGATTA 1397
|| ||||||||||| |||| |||||||| ||||| ||||||||||||||||||||| |
Sbjct 1242 CTAAACTTTGAGTTGTTGCCATTTGGTAGTGGAAGAAGAATGTGCCCTGGTATGGGAATG 1301
Query 1398 GGTATGGCATTGGTACACTTGACTCTTATCAATCTTCTTTACCGTTTCGACTGGAAGCTT 1457
|||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1302 GGTATGGCTTTGATACACTTGACTCTTATCAATCTTCTTTACCGATTCGATTGGAAGCTT 1361
Query 1458 CCGGAAGGAATGAACATAGAAGATGTTGATCTTGAAGAATCATATGGACTTGTTTGTCCC 1517
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1362 CCGGAAGGAATGAACGTAGAAGACGTTGATCTTGAAGAATCATATGGACTTGTTTGTCCT 1421
Query 1518 AAGAAAGTTCCACTTCAACTTATCCCAGTCCTTACCCAATGGACTTGA 1565
|||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 1422 AAGAAAGTCCCACTTCAACTTATCCCGGTCCTTACGCAATGGACTTGA 1469
Score = 758 bits (410), Expect = 0.0
Identities = 492/530 (93%), Gaps = 12/530 (2%)
Strand=Plus/Plus
Query 68 AGACAAAATGATTTGGTGG--T-TTATCGTTGGTGCATCCTTTTTCTTTGCATTTATACT 124
||||||||||| ||||||| | |||||||| ||||||||||||||||||||||||||||
Sbjct 2 AGACAAAATGAATTGGTGGTTTATTATCGTTAGTGCATCCTTTTTCTTTGCATTTATACT 61
Query 125 CATTGCAAAGGACACGAGAACA-ACAAAAAAGAATCTACCTCCAGGACCACCAAGACTTC 183
|||||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||
Sbjct 62 CATTGCAAAGAACACGAGAA-AGACAAAGAAGAATCTACCTCCTGGACCACCAAGACTTC 120
Query 184 CTATAATTGGAAACTTGCACCAATTGGGATCAAAACCTCAGCGTTCACTATTCAAATTAT 243
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 121 CTATAATTGGAAACTTGCACCAATTGGGATCCAAACCTCAGCGTTCGCTATTCAAATTAT 180
Query 244 CTGAAAAGTATGGATCTCTAATGTCTCT-AAAGTTTGGAAATGTGTCTGCTGTTGTGGCA 302
||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 181 CTGAAAAGTATGGATCTTTAATGTC-CTTAAAGTTTGGAAATGTGTCTGCTGTTGTGGCG 239
Query 303 TCAACTCCAGAGACGGTGAAGGATGTCTTAAAAACATTCGACGCAGAGTGTTGTTCCCGA 362
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 240 TCAACTCCAGAGACGGTGAAGGATGTCTTAAAAACGTTCGACGCAGAATGTTGTTCGCGA 299
Query 363 CCTTATATGACTTATCCCGCAAGAGTTACATACAATTTTAACGATCTCGCATTTTCGCCC 422
||||||||||||||||| |||||||| ||||||||| | ||||||||||| ||||| |||
Sbjct 300 CCTTATATGACTTATCCTGCAAGAGTCACATACAATCTAAACGATCTCGCCTTTTCTCCC 359
Query 423 TATAGCAAATATTGGAGGGAAGTACGAAAGATGACGGTCATTGAGCTATACACCGCGAAA 482
||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||||||
Sbjct 360 TATAGCAAATATTGGAGGGAAGTACGAAAGATGACGGTCCTTGAACTCTACACTGCGAAA 419
Query 483 AGGGTCAAATCGTTTCAAAATGTAAGACAAGAAGAAGTTGCCTCATTCGTTGATTTCATC 542
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 AGGGTAAAATCGTTTCAAAATGTAAGACAAGAAGAAGTTGCCTCATTCGTCGATTTCATC 479
Query 543 AAACAA-CATGCTTCATTGGAGAAAAC-AGTTAATATGAAACAGAA-GTT 589
|||||| | ||||||||||||| || | ||||||||||||||| || |||
Sbjct 480 AAACAATC-TGCTTCATTGGAGCAA-CTAGTTAATATGAAACAAAAAGTT 527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58620887055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5