BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25190.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489371 jgi|Araly1|489371|fgenesh2_kg.6__2505__AT5G25190.1 1171 0.0
> Ahg489371 jgi|Araly1|489371|fgenesh2_kg.6__2505__AT5G25190.1
Length=839
Score = 1171 bits (634), Expect = 0.0
Identities = 770/830 (93%), Gaps = 31/830 (4%)
Strand=Plus/Plus
Query 22 TCTTCTTTCAAAACATTTCCACAAACACACCAAACTCACCTGAAACCCTATTT-CCATTT 80
|||||||||||||||||||||||||||||| ||||||||||| ||| || ||| ||||||
Sbjct 31 TCTTCTTTCAAAACATTTCCACAAACACACTAAACTCACCTG-AACTCT-TTTCCCATTT 88
Query 81 ACCATTCACACTAATGGCACGACCACAACAACGCTTTCGAGGCGTTAGACAGAGGCATTG 140
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 89 ACCATTCACACTAATGGCACGACCACAACAACGGTTTCGAGGCGTTAGACAGAGGCATTG 148
Query 141 GGGCTCTTGGGTCTCCGAAATTCGTCACCCTCTCTTGAAAACAAGAATCTGGCTAGGGAC 200
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 149 GGGCTCTTGGGTCTCCGAAATTCGTCACCCACTCTTGAAAACAAGAATCTGGCTAGGGAC 208
Query 201 GTTTGAGACAGCGGAGGATGCAGCAAGGGCCTACGACGAGGCGGCTAGGCTAATGTGTGG 260
||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 209 GTTTGAGACGGCGGAGGATGCAGCAAGGGCCTACGACGAGGCAGCGAGGCTAATGTGCGG 268
Query 261 CCCGAGAGCTCGTACTAATTTCCCATACAACCCTAATGCCATTCCTACTTCCTCTTCCAA 320
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 CCCGAGAGCTCGTACCAATTTCCCATACAACCCTAATGCCATTCCTACTTCCTCTTCCAA 328
Query 321 GCTTCTATCAGCAACTCTTACCGCTAAACTCCACAAATGCTACATGGCTTCTCTTCAAAT 380
|||||| ||||| || || || ||||||||||||||||||||||||||||||||||||||
Sbjct 329 GCTTCTTTCAGCCACACTCACTGCTAAACTCCACAAATGCTACATGGCTTCTCTTCAAAT 388
Query 381 GACCAAGCAAACGCAAACACAAACGCAAACGCAGACCGCAAGATCACAATCCGCGGACAG 440
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 389 GACCAAACAAACGCAAACACAAACGCAAACGCAGACCGCAAGATCACAATCCCCGGACAC 448
Query 441 TGACGGTGTGACGGCTAA-CGAAAGTCA-TTTGAAC-----AG-AGGAGTAACGGAGACG 492
| ||||||||||||| || |||| ||| ||| ||| || ||||||||||||||||
Sbjct 449 TAACGGTGTGACGGCCAATGGAAA-TCAGTTT-AACAGGGAAGTAGGAGTAACGGAGACG 506
Query 493 ACAGAGATCAAGTGGGAAGATGGAAATGCGAATATGCAACAGAATTTTAGGCCATTGGAG 552
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 507 ACGGAGATCAAGTGGGAAGATGGAAACGCGAATATGCAACAGAATTTTAGGCCATTGGAG 566
Query 553 GAAGATCATATCGAGCAAATGATTGAGGAGCTGCTTCACTACGGTTCCATTGAGCTTTGC 612
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 GAAGATCATATTGAGCAAATGATTGAGGAGCTGCTTCACTACGGTTCCATTGAGCTTTGC 626
Query 613 TCTGTTTTACCAACTCAGACGCTGTGAGAAATGGCCTTGTCGTTTTAGCGTATTCttttc 672
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 627 TCTGTTTTACCAACTCAGACGCTGTGAGAAATGGCCCTGTCGTTTTAGCGTATTCTTTT- 685
Query 673 atttttatttttGTTTCCACAAAAACGGCGTCGTAAGTGATGAGAGTAGTAGTGAGAGAA 732
| ||||| | ||| ||||||||||||||||||| |||||||||||| ||
Sbjct 686 -T----ATTTT-------A-AAA--CGGCGTCGTAAGTGATGAG-GTAGTAGTGAGAAAA 729
Query 733 GGCTAATTTCAAGACATTTTGATCTGAATTGGCCTCTTTTGAAACACTGATTCTAGTTTC 792
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 730 GGCTAATTTCAAGACATTTTGATCTGAATTGGCCTCTTTTGAAACACTGGTTCTGGTTTC 789
Query 793 TATAAGAG-CAATCGATCATATGCTATGTTATGTATAGTATTATaaaaaa 841
||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 790 CATAAGAGGCAATCGATCATATGCTATGTAATGTATAGTATTATAAAAAA 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5