BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25210.1
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489372 jgi|Araly1|489372|fgenesh2_kg.6__2506__AT5G25210.1 1157 0.0
> Ahg489372 jgi|Araly1|489372|fgenesh2_kg.6__2506__AT5G25210.1
Length=895
Score = 1157 bits (626), Expect = 0.0
Identities = 817/902 (91%), Gaps = 42/902 (5%)
Strand=Plus/Plus
Query 22 tctctctctctctcAAAGTTAGTATCTCAGTACCTTTACGCTTTGT-T-TGTC-TCTATC 78
|||||||||||||||||||||||||||||||||||||||||||||| | | || ||| ||
Sbjct 1 TCTCTCTCTCTCTCAAAGTTAGTATCTCAGTACCTTTACGCTTTGTCTCT-TCTTCT-TC 58
Query 79 TTCTTCCTGATATTCAGAGAATGGTTTCATCAGATGATTGGACGAAGTGTGCGATGAGAG 138
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTCTTCTTG-GATTCAGAGAATGGTTTCATCAGATGATTGGACGAAGTGTGCGATGAGAG 117
Query 139 ATGGAGAAGTGGTGGCAGAGCTTTTGGTGAA-GCTTAAAGAAGCCAAAGTAATCAAGAAT 197
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 118 ATGGAGAAGTGGTGGCAGAGCTTTTGGT-AAGGCTTAAAGAAGCCAAAGTAATCAAGAAT 176
Query 198 CCGATTGTAACAGCGCTCCGGTGGGGAATCCAACAGCCAAGGTCTCGGTGTCCAAGAAAA 257
||| ||||| |||| |||||||||||||||| |||||| ||||||||||||| || |||
Sbjct 177 CCGGTTGTAGCAGCACTCCGGTGGGGAATCCGGCAGCCACGGTCTCGGTGTCCGAGGAAA 236
Query 258 GAATCTGAATCTAGATGTAGTCCAAGTACACCACTATCTTGGAGTGGTGGTTGTGGTGGT 317
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAAGCTGAATCTAGATGTAGTCCAAGTACACCACTATCTTGGAGTGGTGGTTGTGGTGGT 296
Query 318 TCTTCTTCTTCTCCATCTGGTTATGTCGATGGTTACGAAGCTACTAGTCGTCAAATCAGT 377
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 297 TCTTCTTCTTCTCCATCTGGTTATGTCGATGGTTACGAAGCTACTAGTCGTCAGATCAGT 356
Query 378 GCCGTTGGATCTAGATCCAAGAACATTTCATCACTTAGATCACCATTCAGCGAGCGAGGC 437
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 357 GCCGTTGGATCTAGATCCAAGAACATTGCATCACTTAGATCACCATTCAGCGAGCGAGAC 416
Query 438 ATCGAGAATAATAACTTGAAGAGAATGAAGATGAATCATATTCAGAATTTGGCAAAGGAT 497
||||| || ||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 417 ATCGAAAACAATAACTTGAAGAGAATGAAGATGAATCATAGTCAGAATTTGGCAGAGAAT 476
Query 498 GAGAATTGCAAGACAGATGGCAATTTCTTGCTACCAGATTTGAATATAGTGCCATGTGAC 557
|||||| ||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 477 GAGAATCGCAAGGCGGATGGCAATTTCTTGCTACCAGATTTGAATATAATGCCATGTGAC 536
Query 558 GAAAATAGTGACCACTATACGTCTTTAGGTGTGGAAACAACACTATATGGGATAAGGATT 617
|||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 537 GAAAATAGTGACCATTATTCGTCTTTGGGTGTGGAAACAACACTATATGGGATAAGGATT 596
Query 618 ATAAGGTGAAAGAAGCTCACTTAATCCATGAGAAAGTGGTTTTGAGAAT--G-TT---T- 670
|||||||||||||| ||||||||||| ||||||| |||||||||||||| | || |
Sbjct 597 ATAAGGTGAAAGAAACTCACTTAATC-ATGAGAA-GTGGTTTTGAGAATCTGGTTCGATC 654
Query 671 A-AG----CTGATCTGATCATCTTTGACTCGGCTTTTTAAAAGGGTTCGCGCCACGCATG 725
| || ||||| |||||||||||| |||||||||| ||||||||| || ||||||| |
Sbjct 655 AGAGTAAGCTGATTTGATCATCTTTGGCTCGGCTTTTGAAAAGGGTTTGCTCCACGCAGG 714
Query 726 AGCTCGAAAAGACAAA-GA------GT--ATAAATTCCTC--AAGGAAGTTTCCTTTGTG 774
| |||||||||||||| || || ||||||||||| |||||||||||| || ||
Sbjct 715 AACTCGAAAAGACAAAAGATCTTCTGTGTATAAATTCCTCTCAAGGAAGTTTCCATTATG 774
Query 775 TGGTGGT-TCTA-TAT---ATGAAGATCATCAGCAAATGTGTAAGATAGATAAAACAAAG 829
|||||| |||| | | || |||||||||||||| |||||||||||||||||||||||
Sbjct 775 GGGTGGTATCTAATTTTCTATAAAGATCATCAGCAA-TGTGTAAGATAGATAAAACAAAG 833
Query 830 AGAAGAATATAAT--TT-CTGGTTGTTTCTTTGTAGCAATAACAAAAACAGATATTTTGT 886
||||||||||||| || ||| || |||||||||||||| |||||||| |||||||||||
Sbjct 834 AGAAGAATATAATAATTTCTGATTATTTCTTTGTAGCAAGAACAAAAATAGATATTTTGT 893
Query 887 AT 888
||
Sbjct 894 AT 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34577485719
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5