BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25220.1
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489374 jgi|Araly1|489374|fgenesh2_kg.6__2508__AT5G25220.1 2566 0.0
Ahg487938 jgi|Araly1|487938|fgenesh2_kg.6__1072__AT5G11060.1 942 0.0
> Ahg489374 jgi|Araly1|489374|fgenesh2_kg.6__2508__AT5G25220.1
Length=1816
Score = 2566 bits (1389), Expect = 0.0
Identities = 1700/1841 (92%), Gaps = 58/1841 (3%)
Strand=Plus/Plus
Query 3 TGATAATTGAAACATATGAAACAATCGTCGT--CA-TAGAAGCAGCAGAGATTCA----- 54
|||||||||||||||| |||||||||||| | | ||||||||||||||||||
Sbjct 2 TGATAATTGAAACATAAGAAACAATCGTCATAGAAGCAGAAGCAGCAGAGATTCACCTTC 61
Query 55 --C-C-TTCTTTCTTTATCTTTCCCTCTCAGAAACAGGaaacaaaattcaaaaagaacaa 110
| | ||||||||||||||||||||||||||||||||||| | ||||| |||| || ||
Sbjct 62 TTCTCTTTCTTTCTTTATCTTTCCCTCTCAGAAACAGGAAA-ATAATTC-AAAA-AA-AA 117
Query 111 aaaaaaaaaGGTCAAACCAAAACGATGGCGTTTCATCACAATCATCTCTCACAAGACCTC 170
||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 118 AAAAAAAAA-GTCAAGCCAAAACGATGGCGTTTCATCACAATCATCTCTCTCAAGACCTC 176
Query 171 TCCTTCAATCATTTCACCGACCAACACCAACCTCCACCTCCGCAACCGCCTCCTCCTCCT 230
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 177 TCCTTCAATCATTTCACCGACCAACACCAACCTCCTCCTCCGCAACCGCCTCCTCCTCCG 236
Query 231 CCGCAACAGCAACAACATTTCCAAGAAGCACCGCCTCCTAATTGGTTAAACACAGCGCTT 290
|||||||| ||||||||||| |||||||| ||||||||||||||| | ||||||||||||
Sbjct 237 CCGCAACAACAACAACATTTTCAAGAAGCCCCGCCTCCTAATTGGCTCAACACAGCGCTT 296
Query 291 CTTCGTTCCTCAGATAACAACAATAACTTCCTCAACCTCCACACAGCCACCGCTAACACC 350
||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 297 CTTCGTTCCTCCGATAACAACAAT---TTCCTTAACCTCCACACAGCTACCGCTAACACC 353
Query 351 ACAACCGCAAGCAGCTCCGATTCTCCTTCCTccgccgccgccgccgccgcTGCTAACCAG 410
|||||||||||||||||||||||||||| || |||||||||| ||||||||||||
Sbjct 354 ACAACCGCAAGCAGCTCCGATTCTCCTT-CT-----TCCGCCGCCGCTGCTGCTAACCAG 407
Query 411 TGGCTATCTCGCTCCTCCTCTTTCCTCCAACGAAACAACAACAACAAC-GCTTCCA---T 466
||||| |||||||||||||| ||||||||||||||||||||| |||| || |||| |
Sbjct 408 TGGCTCTCTCGCTCCTCCTCCTTCCTCCAACGAAACAACAAC-GCAACAGCCTCCACCGT 466
Query 467 AGTCGGAGATGGGATCGATGATGTCACCGGAGGAGCAGACACTATGATTCAGGGAGAGAT 526
|||||||| || |||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 467 TGTCGGAGAAGGAATCGATGATGTCACTGGAGGAGCGGAGACTATGATTCAGGGAGAGAT 526
Query 527 GAAAACCGGCGGTGGAGAAAACAAAAACGACGGCGGAGGAGCTACGGCGGCGGATGGAGT 586
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 527 GAAAAGCGGCGGTGGAGAAAACAAAAACGACGGCGGAGGAGCTACGGCGGCGGACGGAGT 586
Query 587 AGTGAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTTTCGCATCCTCTTTACGAGCA 646
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 587 TGTGAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTCTCTCATCCTCTTTACGAGCA 646
Query 647 GCTTTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAG 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GCTTTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAG 706
Query 707 AATCGATGCTCAGCTTGCTCAGTCTCAACACGTCGTCGCTAAATACTCAGCTTTAGGCGC 766
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 707 AATCGATGCTCAGCTTGCTCAGTCACAACACGTCGTCGCTAAATACTCAGCTTTAGGCGC 766
Query 767 CGCCGCTCAAGGTCTCGTCGGCGACGATAAAGAACTTGACCAGTTCATGACACATTATGT 826
|||||||||||| |||||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 767 CGCCGCTCAAGGACTCGTCGGTGATGACAAAGAGCTTGACCAGTTCATGACACATTATGT 826
Query 827 GTTGCTACTGTGTTCATTT-AAAGAGCAATTGCAACAACATGTGCGTGTTCATGCAATGG 885
|||| |||||||||| ||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 827 GTTGTTACTGTGTTC-TTTCAAAGAGCAATTGCAACAACACGTTCGTGTTCATGCAATGG 885
Query 886 AAGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAACAGGAGTGTCTC 945
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 886 AAGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAACAGGTGTGTCTC 945
Query 946 CTGGAGAAGGGATGGGAGCAACAATGTCTGACGATGAAGATGAACAAGTAGAGAGTGATG 1005
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 946 CTGGTGAAGGGATGGGAGCAACAATGTCTGATGATGAAGATGAACAAGTAGAGAGTGATG 1005
Query 1006 CTAATATGTTCGATGGGGGATTAGATGTGTTGGGTTTTGGTCCTTTGATTCCTACTGAGA 1065
||||| ||||||||||| | |||||||||||||| |||||||||||| ||||||||||||
Sbjct 1006 CTAATTTGTTCGATGGGAGCTTAGATGTGTTGGGGTTTGGTCCTTTGGTTCCTACTGAGA 1065
Query 1066 GTGAGAGGTCGTTGATGGAAAGAGTTAGACAAGAACTTAAACATGAACTCAAACAGGGTT 1125
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1066 GTGAGAGATCGTTGATGGAAAGAGTTAGACAAGAACTCAAACATGAACTCAAACAGGGTT 1125
Query 1126 ACAAGGAGAAGATAGTAGACATAAGAGAGGAGATATTAAGGAAGAGAAGAGCTGGGAAGT 1185
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1126 ACAAGGAGAAGATAGTAGACATAAGAGAGGAGATATTGAGGAAGAGAAGAGCTGGGAAAT 1185
Query 1186 TACCAGGAGATACCACCTCTGTTCTCAAAGCTTGGTGGCAATCTCATTCCAAATGGCCTT 1245
|||||||||| || ||||||||||| ||||| ||||||||||||||||| || |||||||
Sbjct 1186 TACCAGGAGACACTACCTCTGTTCTTAAAGCATGGTGGCAATCTCATTCTAAGTGGCCTT 1245
Query 1246 ACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCTAAAACAGA 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1246 ACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCTAAAGCAGA 1305
Query 1306 TAAACAATTGGTTCATCAATCAGAGAAAGAGGAACTGGCATAGCAATCCATCTTCTTCCA 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TAAACAATTGGTTCATCAATCAGAGAAAGAGGAACTGGCATAGCAATCCATCTTCTTCCA 1365
Query 1366 CTGTATTGAAGAACAAACGCAAAAGCAATGCAGGTGACAATAGCGGAAGAGAGCGGTTCG 1425
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1366 CTGTCTTGAAGAACAAACGCAAAAGCAATGCAGGTGACAATAGCGGGAGAGAGCGGTTCG 1425
Query 1426 CGTAGAAACAACAAACATATGATGTGAATTGGGGAGGTGGAAGATGGGATTTGAAA-GCA 1484
|||||||| ||| || ||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 1426 CGTAGAAAGAACGAATATATGATGTGAATTGGG-AGGTGGAAGATGGGATTC-AAATGCA 1483
Query 1485 GGGTTTTAGGGATTTAAAGTT-GAGAATTTTATGGAGGAGTTTGGATTATACAGAGAGAG 1543
|||||| |||| ||||||||| ||||| || |||||||||||||| ||||||||||||||
Sbjct 1484 GGGTTT-AGGGGTTTAAAGTTTGAGAAATTGATGGAGGAGTTTGGGTTATACAGAGAGAG 1542
Query 1544 -GGG-ACAGTATTAGAAAGTAACTTTTTGTGCAATTACATAGTAACGTAGTTTGGTTATG 1601
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1543 AGGGGACAGTATTAGAAAGTAACTTTTTGTGCAATTACATAGTA-CGTAGTTTGGTTATG 1601
Query 1602 TGATTATGCCCATATATTTTATTAAGTAGCACACAAACCAAAAAGAAAATA-----TGAA 1656
|||| |||||||||||||||||||||| |||||||||||||| |||| | ||||
Sbjct 1602 TGAT---GCCCATATATTTTATTAAGTAGTACACAAACCAAAAAAAAAAAAAAAGATGAA 1658
Query 1657 AACTGAAGATGCAGGCttttgtttaatgttttttgtttgtttgt----ctgcatgagttt 1712
|| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1659 AAAAGAAGATTCAGGCTTTTGTTTAATGTTTTTTGTTTGTTTGTTTGTCTGCATGAGTTT 1718
Query 1713 tttttttATGAACCATCAGATAATCATCATCATCATC--CATAATATATCTTGTGAATAA 1770
|| | |||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1719 TTAGTC-ATGAACCATCAGATAATCATCATCATCATCATCGTAATATATCTTGTGAATAA 1777
Query 1771 AGATAGTGAGAGAGGAGAACATTGGGATGCACAAGTTTTCT 1811
|| ||||||||| | ||||||||||||||||||||||||||
Sbjct 1778 AGTTAGTGAGAG-G-AGAACATTGGGATGCACAAGTTTTCT 1816
> Ahg487938 jgi|Araly1|487938|fgenesh2_kg.6__1072__AT5G11060.1
Length=1693
Score = 942 bits (510), Expect = 0.0
Identities = 731/838 (87%), Gaps = 14/838 (2%)
Strand=Plus/Plus
Query 590 GAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTTTCGCATCCTCTTTACGAGCAGCT 649
||| ||||||||||||||||||||||||||||| || || ||||| || |||||||||||
Sbjct 524 GAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTCTACGAGCAGCT 583
Query 650 TTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAGAAT 709
||||||||| ||||| || || |||| ||||| || ||||| |||||||||||||| ||
Sbjct 584 TTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCTTCCGAGGAT 643
Query 710 CGATGCTCAGCTTGCTCAGTCTCAACACGTCGTCGCTAAATACTCAGCTTTAGGCGCCGC 769
|| || |||||||||||||| ||| ||||||| ||||| |||||| | ||| | ||
Sbjct 644 TGACGCACAGCTTGCTCAGTCGCAAAACGTCGTGGCTAAGTACTCAACCTTA---GAAGC 700
Query 770 CGCTCAAGG--T-CTCGTCGGCGACGATAAAGAACTTGACCAGTTCATGACACATTATGT 826
||||||||| | |||| |||||| || || || |||||||| |||||||| ||||||||
Sbjct 701 CGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCATTATGT 760
Query 827 GTTGCTACTGTGTTCATTT-AAAGAGCAATTGCAACAACATGTGCGTGTTCATGCAATGG 885
| | || || || ||| ||||| ||||||||||| ||||| || |||||||||||||
Sbjct 761 ACTATTGCTTTGCTC-TTTCAAAGAACAATTGCAACAGCATGTTCGAGTTCATGCAATGG 819
Query 886 AAGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAACAGGAGTGTCTC 945
||||||| ||||| ||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 820 AAGCTGTTATGGCCTGTTGGGAGATTGAGCAGTCTCTTCAAAGTTTTACAGGAGTATCTC 879
Query 946 CTGGAGAAGGGATGGGAGCAACAATGTCTGACGATGAAGATGAACAAGTAGAGAGTGATG 1005
|||| ||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 880 CTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAGTGATG 939
Query 1006 CTAATATGTTCGATGGGGGATTAGAT-GTGTT-GGGTTTTGGTCCT-TTGATTCCTACTG 1062
|| | |||| ||||| | |||||| || || ||| ||||||||| | | |||| ||||
Sbjct 940 CTCCTTTGTTTGATGGAAGCTTAGATGGT-TTAGGG-TTTGGTCCTCTAG-TTCCCACTG 996
Query 1063 AGAGTGAGAGGTCGTTGATGGAAAGAGTTAGACAAGAACTTAAACATGAACTCAAACAGG 1122
|||||||||| || ||||||||| |||| |||||||||||||||||||||||||| ||||
Sbjct 997 AGAGTGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTTAAACATGAACTCAAGCAGG 1056
Query 1123 GTTACAAGGAGAAGATAGTAGACATAAGAGAGGAGATATTAAGGAAGAGAAGAGCTGGGA 1182
|||| |||||||| || || |||||||||||||||||| | ||||||||||||||||| |
Sbjct 1057 GTTATAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGGAA 1116
Query 1183 AGTTACCAGGAGATACCACCTCTGTTCTCAAAGCTTGGTGGCAATCTCATTCCAAATGGC 1242
| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 1117 AATTACCAGGAGATACCACCTCTGTTCTCAAAGCATGGTGGCAATCTCATTCTAAGTGGC 1176
Query 1243 CTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCTAAAAC 1302
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1177 CTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACAGGTTTGCAGCTCAAAC 1236
Query 1303 AGATAAACAATTGGTTCATCAATCAGAGAAAGAGGAACTGGCATAGCAATCCATCTTCTT 1362
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1237 AGATAAACAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCATAGCAATCCATCTTCTT 1296
Query 1363 CCACTGTATTGAAGAACAAACGCAAAAGCAATGCAGGTGACAATAGCGGAAGAGAGCG 1420
| || || | ||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1297 CTACCGTCTCAAAGAACAAACGCAGAAGCAATGCAGGTGAAAATAGCGGAAGAGAGCG 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71343028885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5