BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G25240.1

Length=593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489375 jgi|Araly1|489375|fgenesh2_kg.6__2509__AT5G25240.1         614    3e-175


> Ahg489375 jgi|Araly1|489375|fgenesh2_kg.6__2509__AT5G25240.1
Length=487

 Score =  614 bits (332),  Expect = 3e-175
 Identities = 452/505 (90%), Gaps = 28/505 (6%)
 Strand=Plus/Plus

Query  4    CTG-TTTTGTTTTTTATTATCATGGCCACTGATAGAGAGAATCTGCTCTCCGATGATTAT  62
            ||| ||||||||| | |||||||||||||||||||||||||||||||| | |||||||||
Sbjct  1    CTGTTTTTGTTTTCT-TTATCATGGCCACTGATAGAGAGAATCTGCTCGCTGATGATTAT  59

Query  63   GAAGAAACGGCTG-CGTTTTGTGGATGTGGGTACTTTCGTAGTTTCA-GTTTCA-CCCGG  119
            ||||||||||| | ||||||||||||||||||  |||||||  || | || | |  ||||
Sbjct  60   GAAGAAACGGC-GACGTTTTGTGGATGTGGGTTTTTTCGTAAATT-ATGTGT-AGTCCGG  116

Query  120  TGGCGGAGAGGAGACGACGAGTCTCGCAGTCGCGGTGGCTGGAGTGGTTGTTTGCAGGAA  179
            ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct  117  TGGCGGAGAAGAGACGACGAGTCTCGCAGTCGCGGTGGTTGGAGTGGTTGTTTGCAAGAA  176

Query  180  GAAAGAAGAGGGAATTGGGGAAGTGAGAAACTTAAGGGGCTAAAAGAGATTTCTGAGAAA  239
            |||||| |||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  177  GAAAGAGGAGGAAAGTGGGGAAGTGAGAAACTTAAGGGGCTAAAGGAGATTTCTGAGAAA  236

Query  240  ATCGCGGGACCAAAGTGGAAAAACTTTATAAGAAGTTTTAGTAGTGGCAGGAAGAAGATG  299
            || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  237  ATTGCGGGGCCAAAGTGGAAAAACTTTATAAGAAGTTTTAGTAGTGGCAGAAAGAAGATG  296

Query  300  AGGAGAGATGTTGATTTCACTTATGATCTGAAAAACTATAGTCTTAATTTCGATGACGGC  359
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGGAGAGATGTTGATTTTACTTATGATCTGAAAAACTATAGTCTTAATTTCGATGACGGC  356

Query  360  GGC-G-----ACGGCAAAGATTCTTCACCGGAGAGGTTTGTAGCTCCGGTTGTCATCAAA  413
            ||| |     ||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct  357  GGCTGCGGCGACGGCGAAGATTCTTCACCGGAGAGGTTTGTAGCTCCGGTTGTCATAAAA  416

Query  414  GtttaattttttattttttacttaaatctttttttttgtataatttttttttATCATTAT  473
            ||||||||| || |||   |||||  ||||||  || ||||||||||||   ||  | ||
Sbjct  417  GTTTAATTTCTT-TTT---ACTTA--TCTTTTAATT-GTATAATTTTTT---AT--T-AT  463

Query  474  TGGTCTTTTATGTTAATACAAACAT  498
            |||| ||||||||||||||||||||
Sbjct  464  TGGT-TTTTATGTTAATACAAACAT  487



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21710530141


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5