BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25260.1
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894427 jgi|Araly1|894427|Al_scaffold_0006_2423 2156 0.0
Ahg489376 jgi|Araly1|489376|fgenesh2_kg.6__2510__AT5G25250.1 1801 0.0
> Ahg894427 jgi|Araly1|894427|Al_scaffold_0006_2423
Length=1398
Score = 2156 bits (1167), Expect = 0.0
Identities = 1324/1400 (95%), Gaps = 10/1400 (1%)
Strand=Plus/Plus
Query 68 ATGTTCAAGGTTGCAAGAGCATCACAGTACTTAGCCATCACCGGTGGTGGGATCGAAGAT 127
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 1 ATGTTCAAGGTTGCAAGAGCATCACAATATTTGGCCATCACCGGTGGTGGGATCGAAGAT 60
Query 128 ATCAAGCTCTCGAAGAAATCATGGGTGTTTCCATGGCAAAGGTGCACCGTTTTCGACGTA 187
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 61 ATCAAGCTCTCGAAGAAATCATGGGTGCTTCCATGGCAAAAATGCACCGTTTTCGACGTG 120
Query 188 TCTCCCGTGAACTACACTTTCAAAGTCCAAGCCATGAGTGCAGAGAAGCTCCCTTTCGTT 247
||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||| |||
Sbjct 121 TCTCCAGTGAACTACACTTTCAAAGTCCAGGCTATGAGTGCAGAGAAGCTACCTTTTGTT 180
Query 248 CTCCCTGCTGTCTTCACTATCGGCCCTCGTGTCGATGACACTGAAGCGCTGATTCTGTAC 307
|| ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 181 CTTCCTGCTGTCTTCACTATCGGCCCTCGTGTTGATGACACTGAAGCACTTATTCTGTAC 240
Query 308 GCTAGGCTTATTTCGCCTCATGACAAACAGTCAAATCATGTGAATGAGCTTGTTGAAGGT 367
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GCTAGGCTGATTTCGCCTCACGACAAACAGTCAAATCATGTCAATGAGCTTGTTGAAGGT 300
Query 368 GTTATCGAGGGAGAGACTCGTGTTCTCGCTGCTTCCATGACCATGGAAGAGATCTTTAAA 427
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GTTATTGAGGGAGAGACTCGTGTTCTCGCTGCTTCCATGACCATGGAAGAGATCTTCAAA 360
Query 428 GGGACGAAA-GAGTTTAAGAAGGAAGTGTTTGATAAGGTTCAATTAGAATTAGACCAGTT 486
||||| ||| |||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 361 GGGAC-AAAGGAGTTTAAGAAGGAGGTGTTTGATAAGGTTCAACTAGAATTGGACCAGTT 419
Query 487 TGGTCTCGTAATCTACAATGCAAACGTGAAACAGCTCGTTGACGTGCCTGGACATGAGTA 546
||| ||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||
Sbjct 420 TGGACTCGTAATCTACAATGCCAACGTCAAACAGCTGGTTGACGTGCCCGGACATGAGTA 479
Query 547 CTTCTCTTACTTGGGTCAGAAAACCCAAATGGAAGCAGCAAATCAGGCCAGGATCGATGT 606
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 480 CTTCTCTTACTTGGGTCAGAAAACCCAAATGGAAGCGGCCAATCAGGCCAGGATCGATGT 539
Query 607 GGCTGAGGCCAAGATGAAGGGAGAGATCGGTGCCAAGGAACGGACTGGGCTTACGCTACA 666
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 540 GGCTGAGGCCAAGATGAAGGGAGAGATCGGTGCCAAGGAACGGACAGGGCTTACGTTACA 599
Query 667 GAACGCTGCGAAAATTGACGCGGAGTCAAAGATCATATCGATGCAGAGGCAAGGAGAAGG 726
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAACGCAGCGAAAATTGACGCGGAGTCAAAGATCATATCGATGCAGAGGCAAGGAGAAGG 659
Query 727 GACGAAGGCGGAGATCAAAGTGAAGACTGAGGTTAAAGTGTTTGAGAATCAGAAGGAAGC 786
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 GACAAAGGCGGAGATCAAAGTGAAGACTGAGGTAAAAGTGTTTGAGAATCAGAAGGAAGC 719
Query 787 TGATGTAGCTAAGGCCAACTCCGAGCTAGCTATGAAGAAAGCTGCTTGGACCAAGGATGC 846
||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||
Sbjct 720 TGATGTAGCTAAGGCCAACTCGGAGCTTGCCATGAAAAAAGCTGCTTGGACCAAGGATGC 779
Query 847 TAAGGTTGCTGAGGTTGAAGCAACCAAGGCCGTGGCTTTGAGAGAAGCTGAGCTTCAGAC 906
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 TAAGGTTGCTGAGGTTGAAGCAACCAAGGCTGTGGCTTTGAGAGAAGCTGAGCTTCAGAC 839
Query 907 TCAGGTCGAGAAAATGAACGCTTTGACTCGAACAGAGAAGCTCAAAGCCGAGTTCCTTAG 966
||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 TCAAGTTGAAAAAATGAACGCTTTGACTCGAACAGAGAAGCTCAAGGCCGAGTTCCTTAG 899
Query 967 CAAAGCCAGTGTTGAGTATGAAACCAAGGTTCAAGAAGCAAATTGGGAATTGTACAACAA 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 CAAAGCCAGTGTTGAGTATGAAACCAAGGTTCAAGAAGCAAATTGGGAATTGTACAATAA 959
Query 1027 GCAGAAGCAAGCGGAGGCAGTTCTATATGAGAAGCAAAAGCAAGCCGAGGCACAGAAAGC 1086
|||||||||||| ||||| ||| |||| ||||||||||||||||| ||||||||||||||
Sbjct 960 GCAGAAGCAAGCAGAGGCGGTTTTATACGAGAAGCAAAAGCAAGCTGAGGCACAGAAAGC 1019
Query 1087 TGAAGCAGACGCTACGTTCTACTCAAAGCAGAA-AGAAGCAGAGGGACTTGTTGCTTTAG 1145
|||||||||||| ||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 1020 TGAAGCAGACGCAACGTTCTACTCAAAGCA-AAGAGAAGCAGAGGGACTTGTTGCTCTAG 1078
Query 1146 CCAGTGCTCAAGGAACTTATCTCAGAACCCTCCTAGACGCTGTTCAGAATGACTATTCTT 1205
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1079 CCAGTGCTCAAGGAACATATCTCAGAACCCTCCTAGACGCAGTTCAGAATGACTATTCTT 1138
Query 1206 GTCTTAGAGACTTTTTGATGATTAACAATGGCACTTATCAGGAGATTGCTAAGACTAACG 1265
| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1139 GCCTTAGAGACTTCTTGATGATTAACAATGGCACTTATCAGGAGATCGCTAAGACTAACG 1198
Query 1266 CGCTTGCGGTCAGAGACTTGCAGCCCAAGATTAGCGTTTGGAACCATGGTGGAGAACAGG 1325
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1199 CACTTGCGGTCAGAGACTTGCAGCCCAAGATTAGCGTTTGGAACCACGGTGGAGAACAGG 1258
Query 1326 GGATTGGTGGTGCTAGTGGGAGTGG---T---ATGAAGGATATAGCTGGACTTTACAAGA 1379
|||||||||||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 1259 GGATTGGTGGTGCTGGTGGGAGTGGGAATGCTATGAAGGATATAGCTGGACTTTACAAGA 1318
Query 1380 TGCTGCCTCCGGTTCTCGATACAGTTTACGAGCAGACTGGGATGCAGCCGCCGGCTTGGA 1439
|||||||||| ||||| ||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct 1319 TGCTGCCTCCAGTTCTTGATACGGTTTACCAGCAGACTGGGATGCAGCCACCGGCTTGGA 1378
Query 1440 TCGGTACTCTAAGCAAGTGA 1459
||||||||||||||||||||
Sbjct 1379 TCGGTACTCTAAGCAAGTGA 1398
> Ahg489376 jgi|Araly1|489376|fgenesh2_kg.6__2510__AT5G25250.1
Length=1582
Score = 1801 bits (975), Expect = 0.0
Identities = 1261/1399 (90%), Gaps = 20/1399 (1%)
Strand=Plus/Plus
Query 59 ATCCTAGACATGTTCAAGGTTGCAAGAGCATCACAGTACTTAGCCATCACCGGTGGTGGG 118
|||||| | |||||||| ||||||||||| |||||||| || || |||||||||| |||
Sbjct 49 ATCCTAAAGATGTTCAAAGTTGCAAGAGCGTCACAGTATTTGGCGATCACCGGTGCTGGT 108
Query 119 ATCGAAGATATCAAGCTCTCGAAGAAATCATGGGTGTTTCCATGGCAAAGGTGCACCGTT 178
|||||||| || ||||| || ||||| ||||||||||||||||||||| |||||| |
Sbjct 109 ATCGAAGACATAAAGCTTTCAAAGAAGTCATGGGTGTTTCCATGGCAATCTTGCACCATC 168
Query 179 TTCGACGTATCTCCCGTGAACTACACTTTCAAAGTCCAAGCCATGAGTGCAGAGAAGCTC 238
||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TTCGATGTTTCTCCGGTGAACTACACTTTCAAAGTCCAAGCCATGAGTGCAGAGAAGCTT 228
Query 239 CCTTTCGTTCTCCCTGCTGTCTTCACTATCGGCCCTCGTGTCGATGAC-ACTGAAGCGCT 297
||||| |||||||||||||| || || || || ||||||||||||||| | |||||||||
Sbjct 229 CCTTTTGTTCTCCCTGCTGTTTTTACGATTGGTCCTCGTGTCGATGACGA-TGAAGCGCT 287
Query 298 GATTCTGTACGCTAGGCTT-ATTTCGCCTCATGACAAACAGTCAAATCATGTGAATGAGC 356
|||||||||||||||| || ||||| |||||||| ||| | || |||||||| ||||||
Sbjct 288 GATTCTGTACGCTAGG-TTGATTTCTCCTCATGATAAAGAATCTAATCATGTTCATGAGC 346
Query 357 TTGTTGAAGGTGTTATCGAGGGAGAGACTCGTGTTCTCGCTGCTTCCATGACCATGGAAG 416
|||||||||||||||| || ||||||||||||||||| |||||||||||||| |||||||
Sbjct 347 TTGTTGAAGGTGTTATTGAAGGAGAGACTCGTGTTCTTGCTGCTTCCATGACTATGGAAG 406
Query 417 AGATCTTTAAAGGGACGAAA-GAGTTTAAGAAGGAAGTGTTTGATAAGGTTCAATTAGAA 475
|||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 407 AGATCTTTAAAGGGAC-AAAGGAGTTTAAGAAGGAAGTGTTTGATAAGGTACAATTGGAA 465
Query 476 TTAGACCAGTTTGGTCTCGTAATCTACAATGCAAACGTGAAACAGCTCGTTGACGTGCCT 535
|| | ||||||||| | |||||||||||||| || ||||| ||||| ||||| ||||||
Sbjct 466 CTAAATCAGTTTGGTTTAGTAATCTACAATGCCAATGTGAAGCAGCTTGTTGATGTGCCT 525
Query 536 GGACATGAGTACTTCTCTTACTTGGGTCAGAAAACCCAAATGGAAGCAGCAAATCAGGC- 594
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 GGACATGAATACTTCTCTTACTTGGGTCAGAAAACCCAAATGGAAGCAGCAAATCAGGCG 585
Query 595 CAGGATCGATGTGGCTGAGGCCAAGATGAAGGGAGAGATCGGTGCCAAGGAACGGACTGG 654
| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 586 C-GGATCGATGTTTCTGAGGCGAAGATGAAGGGAGAGATCGGTGCCAAGGAACGGACTGG 644
Query 655 GCTTACGCTACAGAACGCTGCGAAAATTGACGCGGAGTCAAAGATCATATCGATGCAGAG 714
||||| || |||||||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 645 TCTTACCCTCCAGAACGCAGCGAAGATTGATGCGGAATCAAAGATCATATCGATGCAGAG 704
Query 715 GCAAGGAGAAGGGACGAAGGCGGAGATCAAAGTGAAGACTGAGGTTAAAGTGTTTGAGAA 774
||||||||||||||| || | ||||| ||||||||||||||||||||||||||||||||
Sbjct 705 GCAAGGAGAAGGGACAAAAGAAGAGATTAAAGTGAAGACTGAGGTTAAAGTGTTTGAGAA 764
Query 775 TCAGAAGGAAGCTGATGTAGCTAAGGCCAACT-CCGAGCTAGCTATGAAGAAAGCTGCTT 833
||||||||| |||||||||||||||||||| | |||||||||| ||||| ||||| ||||
Sbjct 765 TCAGAAGGAGGCTGATGTAGCTAAGGCCAA-TGCCGAGCTAGCGATGAAAAAAGCCGCTT 823
Query 834 GGACCAAGGATGCTAAGGTTGCTGAGGTTGAAGCAACCAAGGCCGTGGCTTTGAGAGAAG 893
|||| ||||||||| |||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 824 GGACTAAGGATGCTCAGGTGGCTGAGGTTGAAGCAACCAAAGCAGTGGCTTTGAGAGAAG 883
Query 894 CTGAGCTTCAGACTCAGGTCGAGAAAATGAACGCTTTGACTCGAACAGAGAAGCTCAAAG 953
|||||||||||||||| |||||||||||||| || ||||| ||||| |||||||| ||||
Sbjct 884 CTGAGCTTCAGACTCAAGTCGAGAAAATGAATGCATTGACCCGAACCGAGAAGCTTAAAG 943
Query 954 CCGAGTTCCTTAGCAAAGCCAGTGTTGAGTATGAAACCAAGGTTCAAGAAGCAAATTGGG 1013
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 944 CCGAGTTCCTTAGTAAAGCCAGTGTTGAGTATGAAACCAAGGTTCAAGAAGCAAACTGGG 1003
Query 1014 AATTGTACAACAAGCAGAAGCAAGCGGAGGCAGTTCTATATGAGAAGCAAAAGCAAGCCG 1073
|| | |||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||
Sbjct 1004 AACTATACAACAAGCAGAAGCAAGCAGAGGCGGTTCTATACGAGAAACAAAAGCAAGCCG 1063
Query 1074 AGGCACAGAAAGCTG-AAGCAGACGCTA-CGTTCTACTCAAAGCAGAAAGAAGCAGAGGG 1131
||||||||||||| | |||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1064 AGGCACAGAAAGC-GCAAGCAGACGC-AGCATTCTACTCAAAGCAGAAAGAAGCAGAGGG 1121
Query 1132 ACTTGTTGCTTTAGCCAGTGCTCAAGGAACTTATCTCAGAACCCTCCTAGACGCTGTTCA 1191
||||||||| ||||| ||||||||||| |||||||| ||||||||| |||||||||||||
Sbjct 1122 ACTTGTTGCCTTAGCTAGTGCTCAAGGGACTTATCTAAGAACCCTCTTAGACGCTGTTCA 1181
Query 1192 GAATGACTATTCTTGTCTTAGAGACTTTTTGATGATTAACAATGGCACTTATCAGGAGAT 1251
||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |||||
Sbjct 1182 GAATGACTATTCTTGTCTTAGAGACTTCTTGATGATTAACAATGGTATTTATCAAGAGAT 1241
Query 1252 TGCTAAGACTAACGCGCTTGCGGTCAGAGACTTGCAGCCCAAGATTAGCGTTTGGAACCA 1311
|| |||||||| ||| | ||||| |||||||||||||| |||||||| |||||||||||
Sbjct 1242 CGCGAAGACTAATGCGATGGCGGTTAGAGACTTGCAGCCTAAGATTAGTGTTTGGAACCA 1301
Query 1312 TGGTGGAGAACAGGGGATTGGTGGTGCTAGTGGGAGTGGTATGAAGGATATAGCTGGACT 1371
|||||||||||| || | |||||| ||||||| || |||||||||||||||||||||
Sbjct 1302 TGGTGGAGAACAAGG--T-GGTGGT---AGTGGGAATGCTATGAAGGATATAGCTGGACT 1355
Query 1372 TTACAAGATGCTGCCTCCGGTTCTCGATACAGTTTACGAGCAGACTGGGATGCAGCCGCC 1431
|||||||||| ||||||||||||| ||||| ||||| ||||||||||||||| |||| ||
Sbjct 1356 TTACAAGATGTTGCCTCCGGTTCTTGATACGGTTTATGAGCAGACTGGGATGAAGCCACC 1415
Query 1432 GGCTTGGATCGGTACTCTA 1450
|||||||||||||||||||
Sbjct 1416 GGCTTGGATCGGTACTCTA 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62315640820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5