BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25265.1
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942084 jgi|Araly1|942084|scaffold_602628.1 1895 0.0
Ahg481381 jgi|Araly1|481381|fgenesh2_kg.4__441__AT2G25260.1 431 7e-120
> Ahg942084 jgi|Araly1|942084|scaffold_602628.1
Length=1144
Score = 1895 bits (1026), Expect = 0.0
Identities = 1106/1144 (97%), Gaps = 7/1144 (1%)
Strand=Plus/Plus
Query 74 AATCTCAATCTCTCTCTCAGATGGGTTGTGGTGGAACTTTGTTCTACCCACTTCTCATAA 133
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AATCTCAA--TCTCTCTCAAATGGGTTGTGGTGGAACTTTGTTCTACCCACTTCTCATAA 60
Query 134 CTCTCTCCGTTGCTCTAATCACTTACAACATCATCATCTCCGCTAATGCTCCTCTCAAAC 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTCTCCGTTGCTCTAATCACTTACAACATCATCATCTCCGCTAATGCTCCTCTCAAAC 120
Query 194 AAGGCTTCCCAGGCCGATCTTCTTCCTCCGATATCTCCATTGACCCAGTCATCGAATTAC 253
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 121 AAGGCTTCCCCGGCCGATCTTCATCTTCCGATATCTCCATTGACCCAGTCATCGAATTAC 180
Query 254 CACGTGGCGGCGGATCCAGAAA---CAACGATGGTAAAAGGATAAGACTTTTCCACACGG 310
|||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 181 CACGTGGCGGCGGATCCAGAAACCGCAACAATGGTAAAAGGCCGAGACTTTTCCACACGG 240
Query 311 CGGTGACGGCGTCTGATTCCGTCTATAACACTTGGCAATGTAGAGTTATGTACTATTGGT 370
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 CGGTGACTGCGTCTGATTCCGTCTACAACACTTGGCAATGTAGAGTTATGTACTATTGGT 300
Query 371 TCAAAAAGATTCAAGCTTCTGCTGGACCCGGTTCTGAAATGGGTGGGTTTACTCGGATCT 430
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCAAAAAGGTTCAAGCTTCTGCTGGACCCGGTTCTGAAATGGGTGGGTTTACTCGGATCT 360
Query 431 TGCATTCCGGTAAACCGGATCAGTATATGGATGAGATTCCTACTTTTGTTGCTCAGCCTT 490
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGCATTCTGGTAAACCGGATCAGTATATGGATGAGATTCCTACTTTTGTTGCTCAGCCTT 420
Query 491 TACCTTCTGGGATGGATCAGGGTTATGTTGTGTTGAATAGGCCATGGGCATTTGTACAAT 550
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 TACCTTCTGGGATGGATCAGGGTTATATTGTGTTGAATAGGCCATGGGCATTTGTACAAT 480
Query 551 GGCTTCAACAAACAGATATAAAAGAAGATTATATTTTGATGTCTGAGCCTGATCATATCA 610
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGCTTCAACAAACAGATATTAAAGAAGATTATATTTTGATGTCTGAGCCTGATCATATCA 540
Query 611 TTGTTAAACCTATACCAAATTTGGCTAAAGATGGGCTTGGAGCTGCGTTTCCTTTCTTTT 670
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 541 TTGTTAAACCTATACCAAATTTAGCTAAAGATGGGCTTGGAGCTGCTTTTCCTTTCTTTT 600
Query 671 ACATTGAACCGAAAAAGTATGAGAAGGTGTTGAGGAAGTATTATCCTGAAGTGAGAGGAC 730
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 601 ACATTGAACCGAAAAAGTATGAGAAGGTGTTGAGGAAGTATTATCCAGAAGAGAGAGGAC 660
Query 731 CGGTTACTAATATCGATCCGATAGGAAACTCTCCTGTCATTGTTGGAAAGGATGCTTTGA 790
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 661 CGGTTACTAATATCGATCCGATAGGAAACTCTCCTGTCATTGTGGGAAAGGATGCTTTAA 720
Query 791 AGAAGATTGCTCCAACTTGGATGAATGTTTCTTTGGCTATGAAGAAGGATCCTGAAGCAG 850
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGAAGATAGCTCCAACTTGGATGAATGTTTCTTTGGCTATGAAGAAGGATCCTGAAGCAG 780
Query 851 ACAAGGCTTTTGGATGGGTTCTTGAAATGTATGCTTATGCTGTCTCATCTGCATTGCATG 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACAAGGCTTTTGGATGGGTTCTTGAAATGTATGCTTATGCTGTCTCATCTGCATTGCATG 840
Query 911 GTGTTAGCAATATTCTACACAAAGACTTCATGATTCAGCCACCATGGGATATAGAGGTTG 970
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 841 GTGTTAGCAATATTCTACACAAAGACTTCATGATTCAGCCTCCATGGGATATAGAGGTTG 900
Query 971 GTGACAAGTACATCATACACTACACTTATGGATGTGATTATGATATGAAGGGTAAATTAA 1030
|||||||||||||||||||||||||||||||||| || || |||||||| ||||||||||
Sbjct 901 GTGACAAGTACATCATACACTACACTTATGGATGCGACTACGATATGAATGGTAAATTAA 960
Query 1031 CTTATGGGAAAATCGGGGAATGGAGATTTGACAAAAGATCGTATGATAGCAAACCACCAC 1090
| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 961 CCTATGGGAAAATCGGGCAATGGAGATTTGACAAAAGATCGTATGATAGCACACCACCAC 1020
Query 1091 CAAGGAACCTTACAATGCCTCCACCTGGTGTTTCACAAAGTGTGGTAACACTAGTGAAGA 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CAAGGAACCTTACAATGCCTCCACCTGGTGTTTCACAAAGTGTGGTAACACTAGTGAAGA 1080
Query 1151 TGATAAATGAAGCCACGGCCAACATACCAAACTGGGGATCATA-A-agagacagagagag 1208
||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct 1081 TGATAAATGAAGCCACGGCCAACATACCAAACTGGGGATCATAGAGAGAGACAAAGAGAA 1140
Query 1209 agaA 1212
||||
Sbjct 1141 AGAA 1144
> Ahg481381 jgi|Araly1|481381|fgenesh2_kg.4__441__AT2G25260.1
Length=1130
Score = 431 bits (233), Expect = 7e-120
Identities = 698/918 (76%), Gaps = 50/918 (5%)
Strand=Plus/Plus
Query 295 AGACT-TTTCCACACGGCGGTGACGGCGTCTGATTCCGTCTATAACACTTGGCAATGTAG 353
||||| ||| |||||||||||||| || | |||||||| |||| ||| ||||| ||| |
Sbjct 190 AGACTGTTT-CACACGGCGGTGACAGCCACGGATTCCGTGTATAGCACGTGGCAGTGTCG 248
Query 354 AGTTATGTACTATTGGTTCAAAAAGATTCAAGCTTCTGCTGGACCCGGTTCTGAAATGGG 413
|| ||||||||||||| | || || ||| || | || ||| || || || |||||
Sbjct 249 GGTCATGTACTATTGGTAC-AACAGGTTC-AG----GGATGAACCGGGATCGGATATGGG 302
Query 414 TGGGTTTACTCGGATCTTGCATTCCGGTAAACCGGATCAGTA-T-ATGGATGAGATTCCT 471
||||| ||| |||||||||||||| ||| ||| ||| | | | ||||||||||| |||
Sbjct 303 TGGGTATACCCGGATCTTGCATTCGGGTCGACCCGAT--GGACTCATGGATGAGATCCCT 360
Query 472 ACTTTTGTTGCTCAGCCT-TTACCTTCTGG-GATGGATC-AGGGTTATGTTGTGT-TGAA 527
|| ||||||||| | ||| || ||||| || | | || | |||| ||||| || | | ||
Sbjct 361 ACCTTTGTTGCTGACCCTCTT-CCTTCCGGTG-TTGA-CAAGGGATATGTAGT-TCTAAA 416
Query 528 TAGGCCATGGGCATTTGTACAATGGCTTCAACAAACAGATATAAAAGAAGATTATATTTT 587
|||||| ||||| ||||||||||||||||||||| || ||||| | |||||||| ||| |
Sbjct 417 TAGGCCTTGGGCGTTTGTACAATGGCTTCAACAAGCACATATAGAGGAAGATTACATTCT 476
Query 588 GATGTCTGAGCCTGATCATATCATTGTTAAACCTATACCAAATTTGGCTAAAGATGGGCT 647
||| | || |||||||||||||| |||||||| |||||||| | || | || ||
Sbjct 477 CATGGCGGAACCTGATCATATCATAGTTAAACCAATACCAAACCTAGCCAGAGGCAATCT 536
Query 648 TG-GAGCTGCGTTT-CCTTTCTTTTACATTGAACCGAA-AAAGTATGAGA-AGGTGT-TG 702
| | ||||||||| ||||| || |||||||||||||| ||| ||||| | ||| | |
Sbjct 537 CGCG-GCTGCGTTTCCCTTT-TTCTACATTGAACCGAAGAAA-TATGA-ATCGGT-TCTC 591
Query 703 AG-GAAGTATTATCCTGAAGTGAGA-GGACCGGTTACT-AA-TATCGATCCGATAGGAAA 758
| || | || || ||| || | ||||| | || | || || ||||| || || ||
Sbjct 592 CGCAAATTCTT-CCCCAAAGAGA-ATGGACC-GATA-TCAAGAATTGATCCCATCGGGAA 647
Query 759 CTCTCCTGTCATTGTTGGAAAGGATGCTTTGAAGAAGATTGCTCCAACTTGGATGAATGT 818
||||| || ||||| ||| |||| |||| ||| ||||||||||| |||||||| ||
Sbjct 648 TTCTCCAGTGATTGTCACTAAGAATGCATTGATGAAAATTGCTCCAACATGGATGAACGT 707
Query 819 TTCTTTGGCTATGAAGAAGGATCCTGAAGCAGACAAGGCTTTTGGATGGGTTCTTGAAAT 878
||||||||||||||| || || || || |||| || |||||||| ||||||||||||||
Sbjct 708 TTCTTTGGCTATGAAAAATGACCCACAAACAGATAAAGCTTTTGGTTGGGTTCTTGAAAT 767
Query 879 GTATGCTTATGCTGTCTCATCTGCATTGCATGGTGTTAGCAATATTCTACACAAAGACTT 938
|||||| || ||||| || ||||| || || || || ||||| |||||||||||||||||
Sbjct 768 GTATGCATACGCTGTTTCTTCTGCGTTACACGGCGTGAGCAACATTCTACACAAAGACTT 827
Query 939 CATGATTCAGCCACCATGGGATATAGAGGTTGGTGA-CAAGTACATCATACACTACACTT 997
|||||||||||| || ||||| | || || || || ||| ||||| |||||||
Sbjct 828 CATGATTCAGCCTCCTTGGGACACCGAAACAAA-GAACACGTTCATAATACATTACACTT 886
Query 998 ATGGATGTGATTAT-GATATGAAGGGTAA-ATTAACTTATGGGAAA-ATCGGGGAATGGA 1054
| || || |||| | || |||||||| || || | || || ||| || || |||||||
Sbjct 887 ACGGCTGCGATT-TCGACATGAAGGGGAAGATGATGGTA-GG-AAAGATTGGAGAATGGA 943
Query 1055 GATTTGACAAAAGATCGTATGATAGCAAACCACCACCAAGGAACCTTACAATGCCTCCAC 1114
|||| || ||| | || || | ||| ||||| || ||||| || || || |||||||||
Sbjct 944 GATTCGATAAACGGTCTTACGGTAGTAAACCGCCCCCAAGAAATCTCCCATTGCCTCCAC 1003
Query 1115 CTGGTGTTTCACAA-AGTGTGGTAACACTAGTGA-AGATGATAAATGAAGCCACGGCCAA 1172
|||||| | | | || ||||| ||| | |||| | ||| | || ||||| || || ||
Sbjct 1004 AAGGTGTTCC-CGAGAGCGTGGTGACATTGGTGACA-ATGGTGAACGAAGCTACAGCTAA 1061
Query 1173 CATACCAAACTGGGGATC 1190
|| || ||||||| |||
Sbjct 1062 TATTCCCAACTGGGAATC 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53669155205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5