BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25270.1
Length=2162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489377 jgi|Araly1|489377|fgenesh2_kg.6__2511__AT5G25270.1 2412 0.0
> Ahg489377 jgi|Araly1|489377|fgenesh2_kg.6__2511__AT5G25270.1
Length=1727
Score = 2412 bits (1306), Expect = 0.0
Identities = 1436/1499 (96%), Gaps = 7/1499 (0%)
Strand=Plus/Plus
Query 582 ATAGTTTCAGCTGTTCTGGGTTCACTTGGGATCTCTAATCCAGAAGGTGGTATTGAAGGG 641
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATAGTTTCAGCAGTTCTGGGTTCACTTGGGATCTCTAATCCAGAAGGTGGTATTGAAGGG 180
Query 642 ATCGATGA-TATGGGTCCTCTTCATGAGAGGCTGTCTCGGAGTTCTGGTCCTGGCACTGC 700
|| ||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 ATTGAT-ACTATGGGTCCTCTTCATGAGAGGCTGTCTCGGAGTTCTGGTCCTAGCACTGT 239
Query 701 AAGAGATTCTTCCGGAGGGCGATCTGCCACACCAAATGCTGTGGACCAGACGTCTACTCC 760
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 240 AAGAGATTCTTCCGGAGGGCGAGCTGCCACACCAAATGCTGTGGACCAGACGTCTACCCC 299
Query 761 CTTGGCATCTTCACAACCAGCAGCGATTCCAGATTCGTTGACAACCTTATCTGAATATCT 820
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 CTTGACATCTTCACAACCAGCAGCGATTCCAGATTCATTGACAACCTTATCTGAATATCT 359
Query 821 GAATCATCTCAGACAAGAGTTTGCTGCTAATGGTAGCAATGCTAATAACTTGCAAGATTC 880
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAATCATCTGAGACAAGAATTTGCTGCTAATGGTAGCAATGCTAATAACTTGCAAGATTC 419
Query 881 TGAAAATTCAGTGGGCAATGTGCAAGATTCTGCTTCTACTACTGGAGAGAGTCGGATTCC 940
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 TGAAAATTCAATGGGCAATGTGCAAGATTCTGTTTCTACTACTGGAGAGAGTCGGATTCC 479
Query 941 AAGACCATCTCATTTGGCAGAAGTGCTGCAATCAACAAGGCAATTGTTGATCGGTGAAGT 1000
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 AAGACCATCTCATTTGGCAGAAGTGCTGCAATCGACAAGGCAATTGTTGATCGGTGAAGT 539
Query 1001 AGCAGATTGCTTATCTAATCTTTCGAGGCAGCTCGTGGATCATGTAAATGTGACCGATCC 1060
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGCAGATTGCTTAACTAATCTTTCGAGGCAGCTCGTGGATCATGTAAATGTGACCGATCC 599
Query 1061 GCCAACCCGAAGGTTGTGCCAGTCAAACATGCTTCAATCAGGATCCCTCTTGGAGAGTTT 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCCAACCCGAAGGTTGTGCCAGTCAAACATGCTTCAATCAGGATCCCTCTTGGAGAGTTT 659
Query 1121 AGGCATTTCACTCCTGGAGCTTGGCCGTGCCACCATGATGCTTCGTTTGGGACAAACACC 1180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 AGGCATTTCACTCCTGGAGCTTGGCCGTGCCACGATGATGCTTCGTTTGGGACAAACACC 719
Query 1181 TGATGATGCTGTTGTTGATGCTGGACCTGCAGTGTTCATATCCCCTACAGGGCGAAATCC 1240
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 TGATGATGCTGTTGTTAATGCTGGGCCTGCAGTGTTCATATCCCCTACAGGGCGAAATCC 779
Query 1241 CTTGCCGTCACACTCCTCTCGGCTGGGCACGAGTATTGGAAGCTTACAAGCAGGAACCGC 1300
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 780 ATTGCCGTCACACTCCTCTCGGCTGGGGACGAGTATTGGAGGCTTACAAGCAGGAACCGC 839
Query 1301 ACATTCTAACCCCTTTGCGGGACAATCACTTGCCTCTGCCCCAAGAAATATTGAGATAAG 1360
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACATTCTAACCCTTTTGCTGGACAATCACTTGCCTCTGCCCCAAGAAATATTGAGATAAG 899
Query 1361 AATACGTACAGGATCTTGGGTGCCCGCCAGTGGGACCAACCAGAGAGAGGAAAGTACTAC 1420
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 900 AATACGTACAGGATCTTGGGTACCCGCCAGTGGGACCAACCAGAGAGAAGAAAGTACTAC 959
Query 1421 ACAACAAACCCCTGGGCAGACAATCCCTTCTA-CACCCAGCAGCACTACTGATCCTGCCC 1479
||||||||||||||||||| |||||||||| | |||| || |||||||||||| ||||||
Sbjct 960 ACAACAAACCCCTGGGCAGTCAATCCCTTC-AGCACCTAGTAGCACTACTGATTCTGCCC 1018
Query 1480 CCTCAACGAGAGGTCCATCTGAACCTCTTCGAAATCCTGTGGCCTTAGTTATACCTGTTG 1539
||||||| |||||| | ||||||||| |||||| |||||||||||||||||||| ||||
Sbjct 1019 CCTCAACAAGAGGTTCGGCTGAACCTCCTCGAAACCCTGTGGCCTTAGTTATACCAGTTG 1078
Query 1540 TTGCTCGATATCAGCAGATATCTCTTGGTGGACGTAGCTCTACTGGATTGGATGGTGTAC 1599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 TTGCTCGATATCAGCAGATATCTCTTGGTGAACGTAGCTCTACTGGATTGGATGGTGTAC 1138
Query 1600 ATCAGCCTGTTACTGAATCTTCTAGGCAGCCACAGAGCGTCGGTACTCCAGGAAGAGAAG 1659
||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1139 ATCAGCCTGTTACTGAACCTTCTAGGCAGCCACAGAGCGCCAGTACTCCAGGAAGAGAAG 1198
Query 1660 GTGATAGCAGTGCTTCTCCTGGCGGTCGGGGTTTGTCTGAATTGAGAAACAGAATCCATC 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GTGATAGCAGTGCTTCTCCTGGCGGTCGGGGTTTGTCTGAATTGAGAAACAGAATCCATC 1258
Query 1720 AGTTTTTGAGGCCCTTATCTCGTCGAGAAAACCAAGCCGGGAGCACGGAGTCTCAGGGTG 1779
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1259 AGTTTTTGAGGCCCTTATCTCGTCGAGAACACCAAGCCGGGAGTTCGGAGTCTCAGGGTG 1318
Query 1780 CAGCAAATCCCTCTGCCACAGCGTCCACAGAAACAAACGAAGCAGTTGCAAATGCACAAG 1839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CAGCAAATCCCTCTGCCACAGCGTCCACAGAAACAAACGAAGCAGTTGCAAATGCACAAG 1378
Query 1840 TAGAGCCAGCAACTACGACAGATGAAGGGAATTTCATATCGAGTGTTCTTCAGCAGATCA 1899
|||||| ||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1379 CAGAGCCGGCAACTATGATGGATGAAGGGAATTTCATATCAAGTGTTCTTCAGCAGATCA 1438
Query 1900 TGCCGTTTATATCTCAAAACGTAGCCTCCTCAAGCTCAGGTGAAGCTGCTACAGGCAGAG 1959
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TGCCCTTTATATCTCAAAACGTAGCCTCCTCAAGCTCAGGTGAAGCTGCTACAGGCAGAG 1498
Query 1960 GCAGCAATAG---TAGACAAGCCTCTTCGAGAGAGGCAGAGGAGGAGGAAGGTACAGAGC 2016
|||||||||| ||||||||||||||| ||||||||| |||||||||||||||||| ||
Sbjct 1499 GCAGCAATAGCAGTAGACAAGCCTCTTCAAGAGAGGCACAGGAGGAGGAAGGTACAGCGC 1558
Query 2017 GAGGGAATTCAACTCGGAGACCTGAACCACCATCACCTCCAGAGTCAAAACGTCAGAGG 2075
||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1559 GAGGGGATTCAAATCGGAGACCTGAACCACCGTCACCTCCAGAGTCGAAACGTCAGAGG 1617
Score = 198 bits (107), Expect = 1e-49
Identities = 115/119 (97%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 156 ATGGGAGACAATGGCAAAGATGAAATTATGGTCGAGGCATCTCAATGCGCTGGTGCTATG 215
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGGAGACAATGGGAAAGATGAAATTATGGTCGAGGCATCTCAATGCGCCAGTGCTATG 60
Query 216 GTTGAGATAAAGATAAAGACGTTGGATTCTCAAACGTACACCTTACGTGTAGATAAATG 274
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTGAGATAAAGATAAAGACTTTGGATTCTCAAACGTACACCTTACGTGTAGATAAATG 119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81360763320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5