BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25280.1
Length=1699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489379 jgi|Araly1|489379|fgenesh2_kg.6__2513__AT5G25280.2 1382 0.0
Ahg487941 jgi|Araly1|487941|fgenesh2_kg.6__1075__AT5G11090.1 396 3e-109
> Ahg489379 jgi|Araly1|489379|fgenesh2_kg.6__2513__AT5G25280.2
Length=1947
Score = 1382 bits (748), Expect = 0.0
Identities = 999/1108 (90%), Gaps = 66/1108 (6%)
Strand=Plus/Plus
Query 4 GAACCAATCACCCTAAGGGGACACTTAAAGAGAGAAACAAATCC---TTCTTCTAAAATA 60
|||||||||||||| ||||||||||| ||||||||||| || || | ||||||||| |
Sbjct 1 GAACCAATCACCCTTAGGGGACACTT-AAGAGAGAAAC-AA-CCAAATCCTTCTAAAAAA 57
Query 61 TTCTTCAATCTTCTTCTCGAAGCTTCTCCAAAAATGGCGATTACTTCTTCTAGAACCACC 120
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 58 TTCTTCAATCTTCTTCTCGAAGCTTCTCC---AATGGCGATTACATCTTCTAGAACCACC 114
Query 121 AGATCAAACGGATCTGCTTCGCTCCGATCCAAATCACCGTCCGGTCGATTCTGTGGCGTT 180
||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 115 AGATCAAACGGATCTGC-T--CTCCGATCCAAATCACCGTCCGGCCGATTCTGTGGCGTA 171
Query 181 TACTCAAACCGTATGCCGTCATCATCTCCGTCGTCGTCAGGTTTCGCTTCTTCCACAAGC 240
|||| | || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TACT-----C--AT--CATCATCATCTCCGTCGTCGTCAGGTTTCGCTTCTTCCACAAGC 222
Query 241 TCAAGTTTCTCCTCACCGTCTACAGCGTTTTTCAGCAGCCACAATCAG---AA-CA--AC 294
||||||||||| |||||||||||||||||||||||||||||||||||| || || ||
Sbjct 223 TCAAGTTTCTCGTCACCGTCTACAGCGTTTTTCAGCAGCCACAATCAGAACAACCACCAC 282
Query 295 C---ACCACCAACACAGATCTGCTTCTCCGACGCGTGTGAATCTATTCACATCAGCTCCG 351
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 283 CATAACCACCAACACAGATCTGCATCTCCGACGCGTGTGAATCTATTCACATCAGCTCCG 342
Query 352 ATGACGCAATCGTTTCGTTACTCAATCGATAACAGATCTATATCACCGAATCGATCCATC 411
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 343 ATGACGCAATCGTTTCGTTACTCGATTGATAACAGATCTATATCACCGAATCGATCCATC 402
Query 412 GCTGTTTCTTCCAACAAACCTAGCAATCATCACAAGATTCCGGATTCGAGGAGAAGATGT 471
||||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||
Sbjct 403 GCTGTTTCTTCCAACAAACCTAGTAATCATCATAAGATTCCGGATTCGAGAAGGAGATGT 462
Query 472 ATGTGCTCTCCGACAACGCATCCTGGTTCATTCCGGTGTAGTCTACACAAGAACGTCGCG 531
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 463 ATGTGTTCTCCGACGACGCATCCTGGTTCTTTCCGGTGTAGTCTACACAAGAACGTCGCG 522
Query 532 AATCCACATGGTCAAGGTACAGCTTCGTATACAACGAATGGATTGAATATGCGTCGATCT 591
|||||||| ||||||||||||| ||||| | |||||| | |||||||||||| |||||
Sbjct 523 AATCCACACGGTCAAGGTACAGGGACGTATCCGACGAATAGTTTGAATATGCGTAGATCT 582
Query 592 GCGATGACGAATTCTCTTGTGAGAATTGGTGGTGTTGAAGGTGAATGGGTGCGAAGAGCT 651
|||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 583 GCGATGACGAATTCGCTTGTGAGAATCGGTGGTGTTGAAGGTGAATGGGTGAGAAGAGCT 642
Query 652 TTGACTACTTTGATTAGACCATCTTCACATCAACTAAAGAGAAGATCTGCTTATGAGCCT 711
||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||| |||
Sbjct 643 TTGACTACTTTGATTCGACCATCGTCACATCAACTCAAGAGAAGATCTGCGTATGAACCT 702
Query 712 CGTCGTAGTAGACTCGCATCTATGTCGAAAGCAGAAGATCTTTGAATCTCTCTTCAGGTT 771
|||||||| |||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 703 CGTCGTAGCAGACTCGCATCTATGTCGAAAGCAGAAGATCTTTGAATCT-T-T-CAGGTT 759
Query 772 TGTTCTTGTTTTTGATATACTCAGATCTGCCATGAACGAGTTGAATCAAGGAGCAGAATC 831
||||||||||||||| |||||||||||||||||| | | ||||| |
Sbjct 760 TGTTCTTGTTTTTGAAATACTCAGATCTGCCATG------T-----C--GGAGC----T- 801
Query 832 GGAGCTGAGTCATACCGGACCGAGTCAAATTCGGAGCTGAGTTATACCGGACCGAGTTAT 891
| || | ||||||||||||||| |||||||||| ||||||| |||||||||||||||
Sbjct 802 G-AG-T----CATACCGGACCGAGTGAAATTCGGAGTTGAGTTAAACCGGACCGAGTTAT 855
Query 892 GTAAAACGGTGACTAAGACGACACCGTTTTTGTTTTGTTGGGTGGGAGATGAGATGATGA 951
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GTAAA-CGGTGACCAAGACGACACCGTTTTTGTTTTGTTGGGTGGGAGATGAGATGATGA 914
Query 952 TGATG------CATTGTACATACACATATT-GCTTATTGAAGCAGAACaaaaaaaTTTCG 1004
||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 915 TGATGATGATGCATTGTACATACACATATTTGCTTATTGAAGCAGAG-AAAAAAATTTCG 973
Query 1005 CAAGTCGAAAGTATCTAGAAATCTAAAAATGGAAAATAGTAGTGACGAATTGGGTAATTA 1064
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 974 CAAGTCGAAAGTATCTAGAAATCTAAAATTGGAAAATAGTAGTGACGAATTGGGTAATTA 1033
Query 1065 AAATCTGGAAAAGGACTTAGTAGTAAAT 1092
||||||||||||||||||||||||||||
Sbjct 1034 AAATCTGGAAAAGGACTTAGTAGTAAAT 1061
Score = 226 bits (122), Expect = 4e-58
Identities = 146/157 (93%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 1125 TCTCCATTGTTCGTTGCCTTCACCGTTAGTTTGTTCCGTCAAGTCAACGTTCTCTATTCT 1184
||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1062 TCTCCATCGTTCGTTGCCTTCACCGTTTGTTTGTTCCGTCAAGTCAACGTTCTCCATTCT 1121
Query 1185 CCGTCGTTGACCCGTTCTGTTTGCCGTTAACCGTCGTCGTGTGTTATGTGTGTTCCGTTA 1244
| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1122 -C--CGTTGATCCGTTCTGTTTGCCGTTAACCGTCGTCGTGTGTTATGTGTGTTGCGTTA 1178
Query 1245 TTATTTCTCCAGGTATGTGTTGTTCGTCGTGTCAGGT 1281
|| ||| |||||||||||||||||||||||||||||
Sbjct 1179 ATA-TTCCCCAGGTATGTGTTGTTCGTCGTGTCAGGT 1214
Score = 134 bits (72), Expect = 3e-30
Identities = 121/142 (85%), Gaps = 14/142 (10%)
Strand=Plus/Plus
Query 1571 TTTTGGAGCTGGAGAATGTGAAAGATTCGAAGGAATCAGA-TTTT--T---C-TCT--GG 1621
|||||||||| |||||||||||||||| ||||||||||| |||| | | ||| |
Sbjct 1353 TTTTGGAGCTAAAGAATGTGAAAGATTCTAAGGAATCAGATTTTTCCTAAACATCTCAAG 1412
Query 1622 AATTTGTGAATCACAGATT---T-AGATTCCTGAAACGGTTGAGGTTAAAGTGAAAAGAT 1677
||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct 1413 AATTTGTGAATCACAGATTGAGTGAGATTCCTGAAACGGTTGAGGTTAAAGTGAAT-GAT 1471
Query 1678 TCAATGAAATCATATTTTTACC 1699
|||||| |||| ||||||||||
Sbjct 1472 TCAATGGAATCTTATTTTTACC 1493
> Ahg487941 jgi|Araly1|487941|fgenesh2_kg.6__1075__AT5G11090.1
Length=1010
Score = 396 bits (214), Expect = 3e-109
Identities = 541/691 (78%), Gaps = 54/691 (8%)
Strand=Plus/Plus
Query 90 AAAAATGGCGATTACTTCTTCTA-GAACCACCAGATCAAACGGATCTGCTTCGCTCCGAT 148
|||||||| || |||||| || | |||||| || ||||||||| | | | ||| || |
Sbjct 3 AAAAATGGTGACTACTTCGTC-ACGAACCA--AG-TCAAACGGA-CCG-GT-GCTTCG-T 54
Query 149 CCA-AATCACCGTCCGGTCGATTCTGTGGCGTTTACTCAAACCGTATGCCG-T-CATCAT 205
|| |||||||||| |||||||| || || | |||||| || | | |||| | |||| |
Sbjct 55 TCACAATCACCGTCGGGTCGATTTTGCGGTGGTTACTC-AA--G-A-GCCGTTCCATCGT 109
Query 206 CTCCGTCGTCGTCAGGTTTCGCTTCTTCCACAAGCTCAAG-TTTCTCCTCACCGTCTA-C 263
|| || || |||| ||||||||| || || || || || ||| || || ||||| | |
Sbjct 110 CT---TCTTCATCAGCTTTCGCTTCATCAACGAGTTCTAGCTTT-TCGTCTCCGTC-ATC 164
Query 264 AGCGTTTTTCAG----CA--GCCACAATC-AGAACAACCACCA-CCAACACAGATCTGCT 315
||| |||||||| || | ||| | | |||||||||| | || ||| |||||||
Sbjct 165 AGCTTTTTTCAGCAATCACCGTCACCA-CGAGAACAACCA-GAGTCATCACCGATCTGCG 222
Query 316 TCTCCGACGCGTGTGAATCTATTCACATCAGC-TCCGATGACGCAATCGTTTCGTTACTC 374
|| ||||| ||||||||||| | |||| | || |||||| | || |||||||| || ||
Sbjct 223 TCACCGACTCGTGTGAATCTCTACACAGC-GCAACCGATGTCTCAGTCGTTTCGATATTC 281
Query 375 AATCGATAACAGATCTATATCACCGA--ATC-GATCCATCGCTGTTTCTTCCAA-CA--A 428
|||||| |||||||||||| |||| | | ||| ||| | || || || ||
Sbjct 282 TCTCGATAGCAGATCTATATCTCCGACTAACAAATCGATCTCCGTATCGAAGAATCAGCC 341
Query 429 ACCTAG-CA--A--TCA-TCACAAGATTC-CGGATTCGAGGAGAAGATGTATGTGCTCTC 481
||| || || | || |||||||| || | || |||| || ||||||||||| ||||
Sbjct 342 ACCGAGCCACCACCACAGTCACAAGA-TCTCAGAAACGAGAAGGAGATGTATGTGTTCTC 400
Query 482 CGACAACGCATCCTGGTTCATTCCGGTGTAGTCTACACAAGAACGTCGCGAATCCACATG 541
|||| |||||||| || || ||| | |||||||||||||||||||| |||||||||||||
Sbjct 401 CGACGACGCATCCAGGATCTTTCAGATGTAGTCTACACAAGAACGTAGCGAATCCACATG 460
Query 542 GTCAAGGTACAGCTTCGTATACAACGAATGGATTGAATATGCGTCGATCTGCGATGACGA 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 461 GTCAAGGTACAGCTTCGTATACAACGAATGGATTGAATATGCGTCGATCTGCGATGACTA 520
Query 602 ATTCTCTTGTGAGAATTGGTGGTGTTGAAGGTGAATGGGTGCGAAGAGCTTTGACTACTT 661
|||| || |||||||| |||||||||||||| || |||||| ||||||||||||| ||||
Sbjct 521 ATTCGCTGGTGAGAATCGGTGGTGTTGAAGGAGAGTGGGTGAGAAGAGCTTTGACGACTT 580
Query 662 TGATTAGACCATCTTCACATCAACT-AAAGAGAAGATCTGCTTATGAGCCTCGTCGTAGT 720
||||| |||| ||||| ||||| | ||| ||| || |||||||| ||||||||| ||||
Sbjct 581 TGATTCGACCTTCTTCGCATCATTTGAAA-AGACGAGCTGCTTATCAGCCTCGTCCTAGT 639
Query 721 AGACTCGCA-TCTATGTCGAAAGCAGAAGAT 750
| ||| || || ||| | ||||| || |||
Sbjct 640 CGGCTCTCAATC-ATGGCCAAAGCTGATGAT 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63724979885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5