BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25290.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942105 jgi|Araly1|942105|scaffold_602649.1 1037 0.0
Ahg942093 jgi|Araly1|942093|scaffold_602637.1 440 1e-122
Ahg352151 jgi|Araly1|352151|fgenesh1_pg.C_scaffold_6002744 95.3 9e-19
> Ahg942105 jgi|Araly1|942105|scaffold_602649.1
Length=1204
Score = 1037 bits (561), Expect = 0.0
Identities = 1008/1211 (83%), Gaps = 82/1211 (7%)
Strand=Plus/Plus
Query 22 GGAAGCATGGTGACTCTCTGGTCGGAGATTCCTATGGACATCTTGAGATCAGTGTTCGAA 81
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 15 GGAAGCATGGTGACTCTCTGGTCGGAGATCCCTATGGACATCTTGAGATCTGTGTTCGAA 74
Query 82 CGTTTGAGTTTTGTCGATCTCCACCGCGCTAAGATCGTGTGTTCGCATTGGTATTCATGT 141
|||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| |||
Sbjct 75 CGTTTGAGTTTTGTGGATTTCCACCGCGCTAAGATCGTGTGTTCGAATTGGTATTCGTGT 134
Query 142 TCGAAACAATCGTTT-C-TCCGAAAAACCAGATCTCCCTTGG-TGATTCTGTTTTCAGAT 198
||||||||| | ||| | || |||||| || |||||| | || ||||||| ||| ||||
Sbjct 135 TCGAAACAAAC-TTTGCCTC-GAAAAAACACATCTCCAT-GGCTGATTCTCTTTCCAGAG 191
Query 199 GA---TGGTGATTGTACTTTGTATAACCCTGAGGAAGCTAGGGTTTACAAAAGTAAGAGA 255
|| |||| ||||| ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 192 GAGGATGGTAATTGTGCTTTGTATAACCCGGAGGAAGCTAGGGTTTACAAAACCAAGAGA 251
Query 256 GACTTATCAAGGTATCGATTCCTAGCAAACTCAGGTAACTGGTTCTTAGTTCTTGATCCT 315
||||||||||| | ||||||| | |||||||||||||| |||||||||||||| ||| ||
Sbjct 252 GACTTATCAAGATTTCGATTCTTGGCAAACTCAGGTAAATGGTTCTTAGTTCTAGATTCT 311
Query 316 AGATCCAATCTCTATATCATAGATTTGTTTAGCGAGAAGAAGATCAATCTTCCACCTCTA 375
| || |||||| |||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 312 AAATTCAATCTTTATATCATAGATTTGTTTAGCGAGAAAAATATCGATCTTCCACCTCTA 371
Query 376 GATTCATTCAAAGGTTACAAATATAATCTTAAGAAAGTTGGAGCTAGAAA-ATTCAAGGA 434
|| |||||||||||| |||| ||||||||||||| ||| |||| || ||| || ||| ||
Sbjct 372 GAGTCATTCAAAGGTAACAAGTATAATCTTAAGAGAGTCGGAGATAAAAAGAT-CAAAGA 430
Query 435 GCTA-G-T-A----TCCGAATATCCCACTTCTT-TCCA-CC-ATCATGCGAAGGATCTGA 484
| || | | | || || ||| || ||| || || | || | | ||||| ||||||
Sbjct 431 GGTAAGATTAGAAATCGGA-TATACCTCTT-TTGTC-ATCCTAAAA-GCGAAATATCTGA 486
Query 485 GAGGTCTTTTGTGGGTAGACGAGAAGAAAGAAGAGTACGTTGTTGTATGGTACTTCCGTA 544
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 487 GAGGTCTTTTGTGGGTAGACGAGAAGAAGGAAGAGTACGTTGTTGTTTGGTACTTCAGTG 546
Query 545 ACAAGTATACGATGGATTCTTTAGCCTTTTGCAAGAACGGGGAAGATCATTACCGTGAGA 604
||||||||| ||| |||| || ||||||||||||||| |||||||||||||||| |||||
Sbjct 547 ACAAGTATAAGATTGATTATTCAGCCTTTTGCAAGAATGGGGAAGATCATTACCATGAGA 606
Query 605 TGCCAACACACTATGGGTTACATGACATATCTGATATGGTACT-ACAACGT--GGTGACC 661
| |||||| ||| ||| ||| | | ||||||||||||| ||| | | ||||||
Sbjct 607 TTCCAACATACTTTGG----CAT-A--T--CTGATATGGTACTTACATCTTATGGTGAC- 656
Query 662 A-TATTTACCTCTCAA-CGAGTTGTAAATACCTTCAAAAACTTGATTTGTCTAGACAAGA 719
| | ||||| ||| || | | | || | ||| || ||||||||||||||||| |||||||
Sbjct 657 AGTCTTTACATCTTAAAC-ACTAGTGATTACATTGAAAAACTTGATTTGTCTGGACAAGA 715
Query 720 AGGTAT-AAGGA-----CCAAGAATGATGATATAATATCACGCTATCAATTGCCATGTCG 773
|||| | ||||| |||||||||| | |||| | | ||| | || |||||| |||
Sbjct 716 AGGTTTCAAGGATGTGTCCAAGAATGAGGCTATATTTTTACGATTTCGTTTGCCAGGTCT 775
Query 774 TCCGACGAATTATAAATTGGTATATGATGCAAAGTGTTGGTGTAGCTATAACATTGCTGT 833
||| | | ||| |||||| ||||||||||||| | | | ||| ||| |||||||||
Sbjct 776 TCCAAGGGATTTTAAATTCACATATGATGCAAAG-G--G-T--AGCAATAGCATTGCTGT 829
Query 834 TACATCATCAGGAGAAGTTTTGTTTGTCTTGAGCATCTTTTC-GCAGTCAACAAGGCGTA 892
|||||||||||||||||||||||| ||| ||| ||||||||| | |||||||||||||||
Sbjct 830 TACATCATCAGGAGAAGTTTTGTTAGTCATGAACATCTTTTCCG-AGTCAACAAGGCGTA 888
Query 893 GGATCTTCTTTCTATACAAGGAGGATCCTAATCCATCCCCGAGTGAGGTTATTTACAAGA 952
||||||||||||| |||||||| ||| | | | ||| |||||||| |
Sbjct 889 GGATCTTCTTTCTCTACAAGGA---TCCGGGT--------G-G-GAGC--ATTTACAACA 933
Query 953 ATCTTGTTGAGGTAGATTCGTTAGG-AGACGAGGCGCTTCTTCTGGATTTGGGTATCACC 1011
| ||||||||||||||||| ||||| | | ||||| || ||||||||||||||||| |||
Sbjct 934 AGCTTGTTGAGGTAGATTCTTTAGGTA-ATGAGGCCCTGCTTCTGGATTTGGGTATAACC 992
Query 1012 GTGCCTGCTGATAGTGACCTTGGTATAGAACCAAACTCTATCTATTTCACTCGCCATGAT 1071
|| ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 993 GTTCCTGCTGATGGTGACCTTGGTATCGAACCAAACTCTATCTATTTCACTCGTCATGAT 1052
Query 1072 CGAGTA-GCTAACCAGAAACGTTCAT-CTCCTGACATCTGTGTGTTCAATATTGTAACAA 1129
|| || | || |||||||||||||| | || |||||||||||||||||| ||| |||||
Sbjct 1053 CGTGTCCGTTA-CCAGAAACGTTCATGC-CCGGACATCTGTGTGTTCAATCTTGAAACAA 1110
Query 1130 AGACCCTCAAACGTTTCCCAGGTCTCTCCAGCTTAAAG-----G-ATGCTCGATGGTTTC 1183
||||||||| ||||||||| |||||||||| ||||||| | |||||||||||||||
Sbjct 1111 AGACCCTCAGACGTTTCCCCGGTCTCTCCAACTTAAAGCTCACGGATGCTCGATGGTTTC 1170
Query 1184 TCCCGTCTTGA 1194
|||||||||||
Sbjct 1171 TCCCGTCTTGA 1181
> Ahg942093 jgi|Araly1|942093|scaffold_602637.1
Length=1427
Score = 440 bits (238), Expect = 1e-122
Identities = 565/715 (79%), Gaps = 54/715 (8%)
Strand=Plus/Plus
Query 39 CTGGTCGGAGATTCCTATGGACATCTTGAGATCAGTGTTCGAACGTTTGAGTTTTGTCGA 98
|||||||||| | ||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 45 CTGGTCGGAGCTCCCTATAGACATCTTGAGATCTGTGTTCGAACGTTTCAGTTTTGTGGA 104
Query 99 TCTCCACCGCGCTAAGATCGTGTGTTCGCATTGGTATTCATGTTCGAAACAATCGTTTCT 158
| | |||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||
Sbjct 105 TTTTCACCGCGCTAAGATCGTGTGTTCGAATTGGTATTCGTGTTCCAAACAATCGTTGCT 164
Query 159 CCGAAAAACCAGATCTCCCTTGG-TGATTCTGTTTTCAGATGATGGTGATTGTACTTTGT 217
||||||||| ||||| || ||| |||||||||||| | | ||||||| |||| || |||
Sbjct 165 ACGAAAAACCGGATCT-CCGTGGTTGATTCTGTTTTTAAACGATGGTGGTTGTGCTATGT 223
Query 218 ATAACCCTGAGGAAGCTAGGGTTTACA-AAAGTAAGAGAGACTTATCAAGGTA-TCGATT 275
| ||||| || ||||| || |||||| || | ||||||| ||| || || | ||||||
Sbjct 224 ACAACCCGGATGAAGCAAGAATTTACAGAACG-AAGAGAGGCTTTTC-CGGGATTCGATT 281
Query 276 CCTAGCAAACTCAGGTAACTGGTTCTTAGTTCTTGATCCTA-GATCCAATCTCTATATCA 334
| | ||||||||||||||||||||||||||||| ||| ||| | |||||| |||||||||
Sbjct 282 CTTGGCAAACTCAGGTAACTGGTTCTTAGTTCTAGATTCTAAG-TCCAATATCTATATCA 340
Query 335 TAGATTTGTTTAGCGAGAAGAAGATCAATCTTCCACCTCTAGATTCATTCAAAGGTTACA 394
||||||||||||||||||| |||||| |||||||||||||||| ||| | || ||| |
Sbjct 341 TAGATTTGTTTAGCGAGAAAAAGATCGATCTTCCACCTCTAGAGTCAATGAAGGGTGGCC 400
Query 395 AATATAATCTTAAGAAAGTTGGAG-CTA-GAAAATTCAAGGAGCTAGTATCCGAATA-TC 451
| || |||| || |||| |||| | | | | ||||||| | || || |||| |
Sbjct 401 TTTTTAGTCTTGAGCAAGTAGGAGAC-ACGGCA-TTCAAGGCG--AG-ATTA-AATAATG 454
Query 452 CCACTTC-T-TTCCA--CCATCATGCG-AAGGATCTGAGAGGTCTTTTGTGGGTAGACGA 506
| | | | ||| | |||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 455 GTAGTGCATATTC-ATTCCATAATGCGGAAG-ATCTGAGAGGTCTTTTGTGGGTAGACGA 512
Query 507 GAAGAAAGAA-GAGTACGTTGTTGTATGGTACTTCCGTAACAA-GTATAC-GATGGATTC 563
|||||| ||| || | ||||||||| |||| ||| | | ||| | ||| || ||
Sbjct 513 GAAGAA-GAAAGAATTCGTTGTTGTGTGGTTTTTC-G-A-CAAAGG-TACCGA---ATA- 563
Query 564 TTTAGCCTTTTGCAAGAACGGGGAAGATCATTACCGTGAGATGCC-A-AC-ACACTATG- 619
|||||||||||||||||||||||||||||||||||| || || || | || | | |||
Sbjct 564 TTTAGCCTTTTGCAAGAACGGGGAAGATCATTACCGCGACATTCCGATACGAAAAAATGT 623
Query 620 -GGTTAC-A-TGACA----T-ATCTGATATGGTACTACAACGTGGTGACCA-TATTTACC 670
||| | | | ||| | || |||||||||||| | |||||||| | | |||||
Sbjct 624 TGGTAAAGAGTTACAAGGCTTATATGATATGGTACTTTATGGTGGTGAC-AGTCTTTACA 682
Query 671 TCTCAACGAGTTGTAAATACC-TTCAAAAACTTGA-TTTGTCTAGACAAGAAGGT 723
||||||| | | || ||| | ||||||| ||| | ||| | | |||||||||||
Sbjct 683 TCTCAACCACTCGTCAAT-CGATTCAAAAGCTTAACTTTTT-TGGACAAGAAGGT 735
> Ahg352151 jgi|Araly1|352151|fgenesh1_pg.C_scaffold_6002744
Length=1062
Score = 95.3 bits (51), Expect = 9e-19
Identities = 111/138 (80%), Gaps = 11/138 (8%)
Strand=Plus/Plus
Query 479 ATCTGAGAGGTCTTTTGTGGGTAGA--CG-AGAAGAAAGAAGAGTACGTTGTTGTATGGT 535
||||||||||||||||||||||||| | ||||||||||||| ||| |||||| ||||
Sbjct 290 ATCTGAGAGGTCTTTTGTGGGTAGATGAGAAGAAGAAAGAAGAATACACTGTTGTGTGGT 349
Query 536 ACTTCCGTAACAAGTATACGATGGATTCTTTAGCCTTTTGCAAGAACGGGGAAGATCATT 595
|| || | | | | | | | || | ||||||||||||||||||||||||||||||
Sbjct 350 -TTTTCG--ATACGGGTGCCA--G-TTATATAGCCTTTTGCAAGAACGGGGAAGATCATT 403
Query 596 ACCGTGAG-ATGCCAACA 612
||||| || || ||||||
Sbjct 404 ACCGT-AGCATTCCAACA 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5