BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25300.1
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942093 jgi|Araly1|942093|scaffold_602637.1 636 0.0
Ahg942094 jgi|Araly1|942094|scaffold_602638.1 305 5e-82
Ahg932414 jgi|Araly1|932414|scaffold_400402.1 145 1e-33
Ahg481265 jgi|Araly1|481265|fgenesh2_kg.4__325__AT2G24080.1 145 1e-33
Ahg352151 jgi|Araly1|352151|fgenesh1_pg.C_scaffold_6002744 119 7e-26
Ahg343060 jgi|Araly1|343060|fgenesh1_pg.C_scaffold_3002823 117 2e-25
Ahg931160 jgi|Araly1|931160|scaffold_303617.1 106 5e-22
Ahg942105 jgi|Araly1|942105|scaffold_602649.1 102 7e-21
> Ahg942093 jgi|Araly1|942093|scaffold_602637.1
Length=1427
Score = 636 bits (344), Expect = 0.0
Identities = 449/499 (90%), Gaps = 9/499 (2%)
Strand=Plus/Plus
Query 288 AGACGAGAAGAAAAAAGAATACATTGTAGTGTGGTTTTTCGACAAAGGTACCGAATATAT 347
|||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||| |
Sbjct 507 AGACGAGAAGAAGAAAGAATTCGTTGTTGTGTGGTTTTTCGACAAAGGTACCGAATATTT 566
Query 348 AGCCTTTTGCAAGAACGGGGAAGATCATTACCGCGACATTCCGATACGAAAAAATGTTTG 407
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 567 AGCCTTTTGCAAGAACGGGGAAGATCATTACCGCGACATTCCGATACGAAAAAATGTTGG 626
Query 408 TAAAGAGTTACAAGACTTATATGATATGTTACTCCATGGTGGTAACAATCTTTATATCTC 467
|||||||||||||| ||||||||||||| |||| |||||||| ||| |||||| |||||
Sbjct 627 TAAAGAGTTACAAGGCTTATATGATATGGTACTTTATGGTGGTGACAGTCTTTACATCTC 686
Query 468 AAAGACTCGTCAATCTATTCGGAAGCTTAGA-TTTTTTGAAGAAGAAGGTTTCATTGATG 526
|| ||||||||||| |||| ||||||| | ||||||| | ||||||||||||||||||
Sbjct 687 AACCACTCGTCAATCGATTCAAAAGCTTA-ACTTTTTTGGACAAGAAGGTTTCATTGATG 745
Query 527 TCGACAATAGTGAGATATTACCATTTCGTAAAATCTCCTTTTA-CATT---GATGGAGCA 582
|| ||| ||||||||||||||||||||||||||||| ||||| | | |||||||||
Sbjct 746 TCTCCAACAGTGAGATATTACCATTTCGTAAAATCTCATTTTATC-TCCCAGATGGAGCA 804
Query 583 AGATTTAGTAATAACATTGCCGTTACAACATCAAGAGAGGTTTTGTTGGTTCAGAACTTC 642
|||||| | ||||||||||| ||||||| |||| ||||||||||||||||||||||||||
Sbjct 805 AGATTTGGCAATAACATTGCTGTTACAATATCAGGAGAGGTTTTGTTGGTTCAGAACTTC 864
Query 643 TTTTACGAGACAACAAGATATAGGAGCTTCCGTTTGTACAAGAAAGATCCTAATCCGGAC 702
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 865 TTTTACGAGGCAACAAGATATAGGAGCTTCCGTCTGTACAAGAAAGATCCTAATCCAGAT 924
Query 703 TTGAATGCTACTATCAACAACCCCTACCCGATGGTTGAGTTATGTTCTCTAGGTGATGT- 761
|||||| ||| |||||||||||| ||||||||||||||| ||| ||||||||||||||
Sbjct 925 TTGAATACTATTATCAACAACCCGTACCCGATGGTTGAGGTATATTCTCTAGGTGATGAG 984
Query 762 -CTCTGCTTCTGGATTTGG 779
|||||||||| |||||||
Sbjct 985 GCTCTGCTTCTAGATTTGG 1003
Score = 255 bits (138), Expect = 5e-67
Identities = 195/222 (88%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 73 GGTGGTTGTGCTATATACAACCCGGACGAAGCTAAAG-A-TTACAAAACAAAAAGAGACT 130
|||||||||||||| ||||||||||| ||||| ||| | ||||| ||| || |||| ||
Sbjct 208 GGTGGTTGTGCTATGTACAACCCGGATGAAGC--AAGAATTTACAGAACGAAGAGAGGCT 265
Query 131 CCTCAGGGATTCGATTCTTGGCAAACTCAGTTAACTGGTTCTTGGTGCTAGATTCT-CGT 189
|| ||||||||||||||||||||||||| |||||||||||| || ||||||||| |
Sbjct 266 TTTCCGGGATTCGATTCTTGGCAAACTCAGGTAACTGGTTCTTAGTTCTAGATTCTAAG- 324
Query 190 TCCAATCTCTATATCATAGATGTGTTTAGCGAGAAAAAGATCGATCTTCCACCCCTAGAA 249
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 325 TCCAATATCTATATCATAGATTTGTTTAGCGAGAAAAAGATCGATCTTCCACCTCTAGAG 384
Query 250 TCAATCAAGAATGGCCTTTATAGTCTTGAGCAAGTAGGAGAC 291
||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 385 TCAATGAAGGGTGGCCTTTTTAGTCTTGAGCAAGTAGGAGAC 426
Score = 130 bits (70), Expect = 3e-29
Identities = 90/100 (90%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 785 GGAAACGTTCTTGTCTGGACATGTGTATGTTCAATCTTGTGACAAAGAAACTTAAACGAT 844
|||||| ||| ||||||||||| ||| |||||||||||| ||||||||||| ||||| |
Sbjct 1091 GGAAACATTCATGTCTGGACATCTGTGTGTTCAATCTTGCAACAAAGAAACTCAAACGCT 1150
Query 845 TCCCGGATCTTTCCAACTTAAAGCTCACGGATGCTCGATG 884
|||||| ||| |||||||||||||||||||||||||||||
Sbjct 1151 TCCCGGGTCTCTCCAACTTAAAGCTCACGGATGCTCGATG 1190
> Ahg942094 jgi|Araly1|942094|scaffold_602638.1
Length=432
Score = 305 bits (165), Expect = 5e-82
Identities = 264/307 (86%), Gaps = 25/307 (8%)
Strand=Plus/Plus
Query 1016 CAA-TGCTCAAGAGTGAATTTGTAGATATGAATAAGGAAGATTCTCAAATTGAGATCAAT 1074
||| ||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 48 CAACTGCTC-AGAGTGAATTTCTAGATATGAATGAGGAAGATTGTCAAATTGAGATCAAT 106
Query 1075 GAGAAAGAGACAAAAATCAACCAAGAACATGATCAAAGTGATGAAACTCAAGCTAAACGT 1134
|||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 107 GAGAAAGAAACAAAAAT---TCAAGAACATGATCAAAGTGATGAATCTCAAGCTAAACGT 163
Query 1135 -AG-GA-GAAGTCTAACTTCTTCTGTTTGGCAAGATCTTGTATCAGTAGGGGGAGAAGCA 1191
|| || | | |||||||||||||| | | | | || | || |||||||||
Sbjct 164 AAGAGACGCCGCCTAACTTCTTCTGTAT--C---A-C---TA-C-GT----GGAGAAGCA 208
Query 1192 AATGTTAAAGAAATAGATAGAAGCATGGAGACTCCTAATTCTAGTCCCC-CCTGGTCGGA 1250
||||| ||||||| ||||| ||||||||||||||| |||||||| |||| |||||||||
Sbjct 209 AATGTCAAAGAAACAGATAAAAGCATGGAGACTCCAAATTCTAG-CCCCTGCTGGTCGGA 267
Query 1251 GCTCCCTGGTGACATATTAAGATCTGTGTTCGAACGTTTGAGTTTTGTTGATTTCCAGCG 1310
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 268 GCTCCCTGGTGACATATTAAGATCTGTGTTTAAACGTTTGAGTTTTGTTGACTTCCAGCG 327
Query 1311 CGCTAAG 1317
|||||||
Sbjct 328 CGCTAAG 334
> Ahg932414 jgi|Araly1|932414|scaffold_400402.1
Length=874
Score = 145 bits (78), Expect = 1e-33
Identities = 176/222 (79%), Gaps = 12/222 (5%)
Strand=Plus/Plus
Query 73 GGTGGTTG-TGCTATATACAACCCGGACGAAGCTAAAG-ATTACAAAACAAAAAGAGACT 130
|||||||| || | ||||||| || || |||| | ||| |||| | || || || ||||
Sbjct 150 GGTGGTTGTTG-TCTATACAAGCCAGAAGAAGAT-AAGTTTTACGAGACGAAGAGTGACT 207
Query 131 CCTC-AGGGATTCGATTCTTGGCAAACTCAGTTAACTGGTTCTTGGTGCTAGATTCTCGT 189
|| ||| | ||||||| |||||| ||| | ||| |||||| ||||| |||||||| |
Sbjct 208 TTTCAAGGTA-TCGATTCCTGGCAAGCTCGGGTAAGTGGTTCCTGGTGGTAGATTCTAGA 266
Query 190 TCCAATCTCTATATCATAGATGTGTTTAGCGA-GAAAAAGATCGATCTTCCACCCCTAGA 248
|| |||||||||||||||||||||||||||| || | |||| |||||||||| ||||
Sbjct 267 TCGGATCTCTATATCATAGATGTGTTTAGCGATGAGAG-GATCCATCTTCCACCTTTAGA 325
Query 249 ATCAATCAA-GAATGGCCTTTATA-GTCTTGAGCAAGTAGGA 288
|||||||| | ||||||||||| | |||||| |||||||
Sbjct 326 GTCAATCAACGG-TGGCCTTTATATGG-TTGAGCGAGTAGGA 365
> Ahg481265 jgi|Araly1|481265|fgenesh2_kg.4__325__AT2G24080.1
Length=1074
Score = 145 bits (78), Expect = 1e-33
Identities = 215/277 (78%), Gaps = 25/277 (9%)
Strand=Plus/Plus
Query 133 TCAGGGAT-TCGATTCTTGGCAAACTCAGTTAACTGGTTCTTGGTGCTAGATTCTCGTTC 191
|||||| | ||||||| |||||| ||| | ||| |||||| ||||| |||||||||| ||
Sbjct 193 TCAGGG-TATCGATTCCTGGCAAGCTCGGGTAAGTGGTTCCTGGTGGTAGATTCTCGATC 251
Query 192 CAATCTCTATATCATAGATGTGTTTAGCGAGAAAAAGATCGATCTTCCACCCCTAGAATC 251
||||||||||||||||||||||||||||| | | |||| |||||||||| |||| ||
Sbjct 252 GGATCTCTATATCATAGATGTGTTTAGCGAGGATAGGATCCATCTTCCACCTTTAGAGTC 311
Query 252 AATCAA-GAATGGCCTTTATA-GTCTTGAGCAAGTAGGAGACGAGAAGAAAA-AAGAAT- 307
|||||| | ||||||||||| | |||||| ||||||| | | | ||| ||||||
Sbjct 312 AATCAACGG-TGGCCTTTATATGG-TTGAGCGAGTAGGAT-CTA-ATGAATTCAAGAATG 367
Query 308 -A--C-AT-T-GTAGTGTGGTT-TTTCGA-CAAAGGTACCGAATATATAGCCTTTTGCAA 359
| | || | || |||||| ||| || ||| || || ||| | ||| ||||||||
Sbjct 368 GAGACTATGTTGTTGTGTGGCAATTT-GAGCAA-GG--CC-AATTTTTAGGGTTTTGCAA 422
Query 360 GAACGGGGAAG-ATCATTACCGCGACATTCCGATACG 395
||| ||||| | ||||||||||| ||||| |||||
Sbjct 423 GAAAGGGGATTTA-CATTACCGCGATATTCCAATACG 458
> Ahg352151 jgi|Araly1|352151|fgenesh1_pg.C_scaffold_6002744
Length=1062
Score = 119 bits (64), Expect = 7e-26
Identities = 188/245 (77%), Gaps = 20/245 (8%)
Strand=Plus/Plus
Query 293 AGAAGAAAAAAGAATACATTGTAGTGTGGTTTTTCGACAAAGGTACCGA-ATATATAGCC 351
|||||||| ||||||||| ||| |||||||||||||| | ||| || | |||||||||
Sbjct 320 AGAAGAAAGAAGAATACACTGTTGTGTGGTTTTTCGATACGGGTGCC-AGTTATATAGCC 378
Query 352 TTTTGCAAGAACGGGGAAGATCATTACCGC-GACATTCCGATACGAAAAA-ATGT--TTG 407
||||||||||||||||||||||||||||| | |||||| | | || | |||| ||
Sbjct 379 TTTTGCAAGAACGGGGAAGATCATTACCGTAG-CATTCCAACA-GATATCGATGTAATTC 436
Query 408 -TAAAGAGTTACAAGACTTATATGATATGTTACTCCATGGTGGTAACAATCTTTATATCT 466
|| | |||||| || | ||| ||||||| |||||| || ||| ||| ||||||| |||
Sbjct 437 ATAGACAGTTACGAGGCATATCTGATATGGTACTCC--GG-GGTGACATTCTTTATGTCT 493
Query 467 -CAAAGACTCGTCAAT-CTATTCGGAAG-CTTAGATTTTT-TGAAGAAGAAGGTTTCATT 522
|| || ||| | || | ||||| | | | | ||||| | || | | ||||||| || |
Sbjct 494 TCAC-GATTCGACGATAC-ATTCG-A-GTCCTGGATTTGTCTGGACATGAAGGTTACAAT 549
Query 523 GATGT 527
|||||
Sbjct 550 GATGT 554
> Ahg343060 jgi|Araly1|343060|fgenesh1_pg.C_scaffold_3002823
Length=864
Score = 117 bits (63), Expect = 2e-25
Identities = 109/130 (84%), Gaps = 8/130 (6%)
Strand=Plus/Plus
Query 123 AAGAGACTCCTCAGGGA-T-TCGATT-CTTGGCAAACTCAGTTAACTGG-TTCTTGGTGC 178
|||||||| |||||||| | | | || ||| |||||||| | ||| ||| ||||| |||
Sbjct 72 AAGAGACTTCTCAGGGACTAT-G-TTCCTT-GCAAACTCGGGTAATTGGTTTCTT-GTGA 127
Query 179 TAGATTCTCGTTCCAATCTCTATATCATAGATGTGTTTAGCGAGAAAAAGATCGATCTTC 238
| |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 128 TGGATTCTAAATCCAATCTCTATATCATAGATGTGTTTAGCGAGAATAGGATCGATCTTC 187
Query 239 CACCCCTAGA 248
| || |||||
Sbjct 188 CGCCTCTAGA 197
> Ahg931160 jgi|Araly1|931160|scaffold_303617.1
Length=538
Score = 106 bits (57), Expect = 5e-22
Identities = 99/119 (83%), Gaps = 4/119 (3%)
Strand=Plus/Plus
Query 135 AGGGATTCGA-TTCTTGGCAAACTCAGTTAACTGGTT-CTTGGTGCTAGATTCTCGTTCC 192
|||| ||||| ||||| |||||||| | ||| ||||| ||| ||| |||||||| |||||
Sbjct 50 AGGGTTTCGATTTCTT-GCAAACTCGGGTAATTGGTTCCTT-GTGATAGATTCTTGTTCC 107
Query 193 AATCTCTATATCATAGATGTGTTTAGCGAGAAAAAGATCGATCTTCCACCCCTAGAATC 251
||||||||||||||||||||||| || |||| ||||||||| | || ||||||||
Sbjct 108 AATCTCTATATCATAGATGTGTTCGGCAAGAATTTGATCGATCTACTGCCTCTAGAATC 166
> Ahg942105 jgi|Araly1|942105|scaffold_602649.1
Length=1204
Score = 102 bits (55), Expect = 7e-21
Identities = 88/104 (85%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 782 ACCGGAAACGTTCTTGTCTGGACATGTGTATGTTCAATCTTGTGACAAAGAAACTTAAAC 841
||| ||||||||| || | |||||| ||| |||||||||||| ||||||| || | ||
Sbjct 1063 ACCAGAAACGTTCATGCCCGGACATCTGTGTGTTCAATCTTGAAACAAAGACCCTCAGAC 1122
Query 842 GATT-CCCGGATCTTTCCAACTTAAAGCTCACGGATGCTCGATG 884
| || ||||| ||| |||||||||||||||||||||||||||||
Sbjct 1123 GTTTCCCCGG-TCTCTCCAACTTAAAGCTCACGGATGCTCGATG 1165
Score = 97.1 bits (52), Expect = 3e-19
Identities = 69/77 (90%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 1242 CTGGTCGGAGCTCCCTGGT-GACATATTAAGATCTGTGTTCGAACGTTTGAGTTTTGTTG 1300
|||||||||| ||||| | ||||| || ||||||||||||||||||||||||||||| |
Sbjct 32 CTGGTCGGAGATCCCT-ATGGACATCTTGAGATCTGTGTTCGAACGTTTGAGTTTTGTGG 90
Query 1301 ATTTCCAGCGCGCTAAG 1317
||||||| |||||||||
Sbjct 91 ATTTCCACCGCGCTAAG 107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5