BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25310.1 Length=1574 Score E Sequences producing significant alignments: (Bits) Value Ahg489382 jgi|Araly1|489382|fgenesh2_kg.6__2516__AT5G25310.1 1720 0.0 Ahg894438 jgi|Araly1|894438|Al_scaffold_0006_2434 619 2e-176 > Ahg489382 jgi|Araly1|489382|fgenesh2_kg.6__2516__AT5G25310.1 Length=1135 Score = 1720 bits (931), Expect = 0.0 Identities = 1069/1137 (94%), Gaps = 4/1137 (0%) Strand=Plus/Plus Query 439 ATGGAGAAGAGGTTTAAGGTGTATGTATACGAAGAAGGCGAGCCACCGCTAGTTCACGAT 498 |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| Sbjct 1 ATGGAGAAGAGGTTTAAGGTTTATGTATATGAAGAAGGCGAGCCACCGTTAGTTCACGAT 60 Query 499 GGACCGTGTAAGAGTGTTTACGCGGTTGAAGGGAGATTCATAACTGAGATGGAGAAAA-G 557 |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| | Sbjct 61 GGACCGTGTAAGAGTGTTTACGCGGTTGAAGGGAGATTTATAACGGAGATTGAGAAAATG 120 Query 558 AAGGACTAAGTTTCGTACTTATGATCCTAACCAAGCTTATGTTTACTTCTTGCCATTTAG 617 ||||| |||||||||||||||||| | |||||||||||||||||||||||||| ||||| Sbjct 121 -AGGACGAAGTTTCGTACTTATGATGCGAACCAAGCTTATGTTTACTTCTTGCCGTTTAG 179 Query 618 TGTTACTTGGCTGGTTCGATACTTATACGAAGGCAATTCTGATGCTAAGCCTTTGAAAAC 677 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 180 TGTTACTTGGCTGGTTCGATACTTATACGAAGGAAATTCTGATGCTAAGCCTTTGAGAAC 239 Query 678 ATTTGTTTCCGATTATATCAGATTAGTATCTACTAATCATCCTTTTTGGAATCGAACTAA 737 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 240 ATTTGTTTCTGATTATATCAGATTAGTATCTACTAATCATCCGTTTTGGAATCGAACTAA 299 Query 738 TGGTGCTGATCACTTCATGCTTACTTGTCACGATTGGGGACCTCTGACTTCACAAGCTAA 797 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 300 TGGAGCTGATCACTTCATGCTTGCTTGTCACGATTGGGGACCTCTGACTTCACAAGCTGA 359 Query 798 TAGA-GATTTGTTCAACACTTCGATTCGAGTTATGTGTAATGCTAATTCATCAGAAGGGT 856 || | ||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 360 TA-ATGATTTGTTCAATACATCGATTCGAGTTATGTGTAATGCTAATTCATCAGAAGGGT 418 Query 857 TTAATCCTACTAAAGATGTGACTCTTCCTGAGATCAAACTCTATGGTGGTGAAGTTGATC 916 |||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 419 TTAATCCTTCAAAAGATGTGACTCTTCCTGAGATTAAACTCTATGGCGGTGAAGTTGATC 478 Query 917 ACAAACTCAGGTTATCTAAAACCTTATCCGCTTCTCCGCGGCCTTACCTCGGGTTCTTCG 976 ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | Sbjct 479 CCAAACTCAGGTTATCTAAAACGTTATCAGCTTCTCCGCGGCCTTACCTCGGGTTCTTTG 538 Query 977 CAGGCGGTGTCCACGGTCCGGTTAGACCGATTCTTTTAAAACACTGGAAACAGCGTGACC 1036 |||||||||| |||||||| || |||||||| ||||| || ||||||||||||||||||| Sbjct 539 CAGGCGGTGTTCACGGTCCAGTGAGACCGATCCTTTTGAACCACTGGAAACAGCGTGACC 598 Query 1037 TGGATATGCCTGTTTATGAATACCTTCCTAAACACTTAAACTACTATGATTTCATGAGAA 1096 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CGGATATGCCTGTATATGAATACCTTCCTAAACACTTAAACTACTATGATTTCATGAGAA 658 Query 1097 GTTCAAAGTTCTGTTTTTGTCCCAGTGGGTATGAGGTAGCTAGTCCTCGAGTCATCGAAG 1156 |||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||| |||| Sbjct 659 GTTCAAAGTTCTGTTTCTGTCCCAGTGGCTATGAGGTAGCTAGCCCTAGAGTCATTGAAG 718 Query 1157 CCATCTACTCTGAGTGTATCCCCGTCATTCTCTCGGTTAACTTCGTGTTACCATTCACTG 1216 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 719 CCATCTACTCCGAGTGTATCCCGGTCATTCTCTCTGTTAACTTCGTGTTACCATTCACTG 778 Query 1217 ATGTTCTTCGTTGGGAGACTTTCTCTGTACTGGTCGACGTTTCAGAGATTCCGAGGTTGA 1276 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 779 ATGTTCTTCGTTGGGAGACTTTCTCTGTACTGGTCGATGTTTCAGAGATTCCGAGGTTGA 838 Query 1277 AGGAGATTCTCATGTCGATCTCCAATGAGAAATATGAATGGCTTAAAAGTAACTTGAGGT 1336 |||||||||||||||||||||| |||||||||| |||||||||||| |||||||| ||| Sbjct 839 AGGAGATTCTCATGTCGATCTCTGATGAGAAATACGAATGGCTTAAACGTAACTTGCGGT 898 Query 1337 ATGTGAGGAGACATTTCGAGCTTAACGATCCTCCTCAGAGATTTGATGCATTTCACTTGA 1396 ||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||| Sbjct 899 ATGTGAGGAGACATTTCGAGCTTAACGATCCTCCTAAGAGGTTTGATGCGTTTCATTTGA 958 Query 1397 CTCTTCATTCCATTTGGTTACGTAGACTTAACTTGAAGCTTACGTAAGGTAAAGTTCTGT 1456 ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 959 CTCTTCACTCCATTTGGTTACGTAGACTTAACTTGAGGCTTACGTAAGGTAAAGTTCTGT 1018 Query 1457 TAGATTTTGTAACTCATATCTCAGAAATGTAGTAAACCTTAAAAGTCTAGATAGATTTGT 1516 |||| ||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||| Sbjct 1019 TAGAATTTGTAACTCATACCTCAAAAATGTAGTAACCCTTAAAAGTCTAGATATATTTGA 1078 Query 1517 TGTTATTAGTTAATGAATAAAGAATTGTTGCAACTTTCTAAGAAATATAGATGATCT 1573 |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| Sbjct 1079 TGTTATTAGTTAATGAATAAAGAATTATTGCAAATTTCTAAGAAATATAGACGATCT 1135 > Ahg894438 jgi|Araly1|894438|Al_scaffold_0006_2434 Length=444 Score = 619 bits (335), Expect = 2e-176 Identities = 397/426 (93%), Gaps = 8/426 (2%) Strand=Plus/Plus Query 1 ATGGATAAGTTTCAATC-CAAATTCACGAGATTCGGATTCATCTCGATTTGTTTCGGATC 59 ||||||||||||||| | || |||||||||||||||||| |||||||||||| ||||||| Sbjct 1 ATGGATAAGTTTCAA-CACAGATTCACGAGATTCGGATTTATCTCGATTTGTCTCGGATC 59 Query 60 GATCGCACTTGTATTATTGATCTCTCATTGTTCAACTTCTTTCTTTGATTACTCTTTTCA 119 |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| || | Sbjct 60 GATCGCACTTGTATTATTGATCTCTCGTTGTTCAATTTCTTTCTTCGATTACTCTCTTGA 119 Query 120 GAAATTCAAATTCTCGTTCCCAGAAGAAACTGAGCTTCGAAGAAACGTTTACACTAGTAG 179 |||||| ||||||||||||| |||| ||||||||||||||||||||| ||| ||| Sbjct 120 GAAATTTGAATTCTCGTTCCC---AGAATCTGAGCTTCGAAGAAACGTTT--ACT-CTAG 173 Query 180 TTCCGGTGAAGAAAACAGAGTCGTCGTTGATTCTCGTCATGTTTCTCAACAGATCCTCAC 239 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 174 TTCCGGTGAAGAAAACAGAGTCGTCGTTGATTCTCATCATGTTTCTCAACAGATCCTCAC 233 Query 240 TGTCCGATCTACTAACTCCACTTTACAGAGTAAACCGGAAAAACTAAACCGGAGAAATTT 299 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 ACTCCGATCTACTAATTCCACTTTACAGAGTAAACCGGAAAAACTAAACCGGAGAAATTT 293 Query 300 GGTGGAACAAGGATTAGCGAAAGCAAGAGCATCGATTTTAGAAGCTTCTTCGAATGTTAA 359 |||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||| Sbjct 294 GGTGGAACAAGGATTAGCGAAAGCAAGAGCTTCGATTCTAGAAGCCTCTTCGAATGTTAA 353 Query 360 CACTACATTGTTCAAATCTGATCTTCCAAACTCAGAAATTTATCGTAATCCATCAGCTTT 419 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 354 CACTACATTGTTCAAATCTGATCTTCCAAACCCAGAAATTTATCGTAATCCATCATCTTT 413 Query 420 ATATCG 425 |||||| Sbjct 414 ATATCG 419 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58963699260 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5