BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25310.1
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489382 jgi|Araly1|489382|fgenesh2_kg.6__2516__AT5G25310.1 1720 0.0
Ahg894438 jgi|Araly1|894438|Al_scaffold_0006_2434 619 2e-176
> Ahg489382 jgi|Araly1|489382|fgenesh2_kg.6__2516__AT5G25310.1
Length=1135
Score = 1720 bits (931), Expect = 0.0
Identities = 1069/1137 (94%), Gaps = 4/1137 (0%)
Strand=Plus/Plus
Query 439 ATGGAGAAGAGGTTTAAGGTGTATGTATACGAAGAAGGCGAGCCACCGCTAGTTCACGAT 498
|||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||
Sbjct 1 ATGGAGAAGAGGTTTAAGGTTTATGTATATGAAGAAGGCGAGCCACCGTTAGTTCACGAT 60
Query 499 GGACCGTGTAAGAGTGTTTACGCGGTTGAAGGGAGATTCATAACTGAGATGGAGAAAA-G 557
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
Sbjct 61 GGACCGTGTAAGAGTGTTTACGCGGTTGAAGGGAGATTTATAACGGAGATTGAGAAAATG 120
Query 558 AAGGACTAAGTTTCGTACTTATGATCCTAACCAAGCTTATGTTTACTTCTTGCCATTTAG 617
||||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 121 -AGGACGAAGTTTCGTACTTATGATGCGAACCAAGCTTATGTTTACTTCTTGCCGTTTAG 179
Query 618 TGTTACTTGGCTGGTTCGATACTTATACGAAGGCAATTCTGATGCTAAGCCTTTGAAAAC 677
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 180 TGTTACTTGGCTGGTTCGATACTTATACGAAGGAAATTCTGATGCTAAGCCTTTGAGAAC 239
Query 678 ATTTGTTTCCGATTATATCAGATTAGTATCTACTAATCATCCTTTTTGGAATCGAACTAA 737
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 ATTTGTTTCTGATTATATCAGATTAGTATCTACTAATCATCCGTTTTGGAATCGAACTAA 299
Query 738 TGGTGCTGATCACTTCATGCTTACTTGTCACGATTGGGGACCTCTGACTTCACAAGCTAA 797
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 300 TGGAGCTGATCACTTCATGCTTGCTTGTCACGATTGGGGACCTCTGACTTCACAAGCTGA 359
Query 798 TAGA-GATTTGTTCAACACTTCGATTCGAGTTATGTGTAATGCTAATTCATCAGAAGGGT 856
|| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TA-ATGATTTGTTCAATACATCGATTCGAGTTATGTGTAATGCTAATTCATCAGAAGGGT 418
Query 857 TTAATCCTACTAAAGATGTGACTCTTCCTGAGATCAAACTCTATGGTGGTGAAGTTGATC 916
|||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 419 TTAATCCTTCAAAAGATGTGACTCTTCCTGAGATTAAACTCTATGGCGGTGAAGTTGATC 478
Query 917 ACAAACTCAGGTTATCTAAAACCTTATCCGCTTCTCCGCGGCCTTACCTCGGGTTCTTCG 976
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 479 CCAAACTCAGGTTATCTAAAACGTTATCAGCTTCTCCGCGGCCTTACCTCGGGTTCTTTG 538
Query 977 CAGGCGGTGTCCACGGTCCGGTTAGACCGATTCTTTTAAAACACTGGAAACAGCGTGACC 1036
|||||||||| |||||||| || |||||||| ||||| || |||||||||||||||||||
Sbjct 539 CAGGCGGTGTTCACGGTCCAGTGAGACCGATCCTTTTGAACCACTGGAAACAGCGTGACC 598
Query 1037 TGGATATGCCTGTTTATGAATACCTTCCTAAACACTTAAACTACTATGATTTCATGAGAA 1096
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CGGATATGCCTGTATATGAATACCTTCCTAAACACTTAAACTACTATGATTTCATGAGAA 658
Query 1097 GTTCAAAGTTCTGTTTTTGTCCCAGTGGGTATGAGGTAGCTAGTCCTCGAGTCATCGAAG 1156
|||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||| ||||
Sbjct 659 GTTCAAAGTTCTGTTTCTGTCCCAGTGGCTATGAGGTAGCTAGCCCTAGAGTCATTGAAG 718
Query 1157 CCATCTACTCTGAGTGTATCCCCGTCATTCTCTCGGTTAACTTCGTGTTACCATTCACTG 1216
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 719 CCATCTACTCCGAGTGTATCCCGGTCATTCTCTCTGTTAACTTCGTGTTACCATTCACTG 778
Query 1217 ATGTTCTTCGTTGGGAGACTTTCTCTGTACTGGTCGACGTTTCAGAGATTCCGAGGTTGA 1276
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 779 ATGTTCTTCGTTGGGAGACTTTCTCTGTACTGGTCGATGTTTCAGAGATTCCGAGGTTGA 838
Query 1277 AGGAGATTCTCATGTCGATCTCCAATGAGAAATATGAATGGCTTAAAAGTAACTTGAGGT 1336
|||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||
Sbjct 839 AGGAGATTCTCATGTCGATCTCTGATGAGAAATACGAATGGCTTAAACGTAACTTGCGGT 898
Query 1337 ATGTGAGGAGACATTTCGAGCTTAACGATCCTCCTCAGAGATTTGATGCATTTCACTTGA 1396
||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||
Sbjct 899 ATGTGAGGAGACATTTCGAGCTTAACGATCCTCCTAAGAGGTTTGATGCGTTTCATTTGA 958
Query 1397 CTCTTCATTCCATTTGGTTACGTAGACTTAACTTGAAGCTTACGTAAGGTAAAGTTCTGT 1456
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 959 CTCTTCACTCCATTTGGTTACGTAGACTTAACTTGAGGCTTACGTAAGGTAAAGTTCTGT 1018
Query 1457 TAGATTTTGTAACTCATATCTCAGAAATGTAGTAAACCTTAAAAGTCTAGATAGATTTGT 1516
|||| ||||||||||||| |||| ||||||||||| ||||||||||||||||| |||||
Sbjct 1019 TAGAATTTGTAACTCATACCTCAAAAATGTAGTAACCCTTAAAAGTCTAGATATATTTGA 1078
Query 1517 TGTTATTAGTTAATGAATAAAGAATTGTTGCAACTTTCTAAGAAATATAGATGATCT 1573
|||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 1079 TGTTATTAGTTAATGAATAAAGAATTATTGCAAATTTCTAAGAAATATAGACGATCT 1135
> Ahg894438 jgi|Araly1|894438|Al_scaffold_0006_2434
Length=444
Score = 619 bits (335), Expect = 2e-176
Identities = 397/426 (93%), Gaps = 8/426 (2%)
Strand=Plus/Plus
Query 1 ATGGATAAGTTTCAATC-CAAATTCACGAGATTCGGATTCATCTCGATTTGTTTCGGATC 59
||||||||||||||| | || |||||||||||||||||| |||||||||||| |||||||
Sbjct 1 ATGGATAAGTTTCAA-CACAGATTCACGAGATTCGGATTTATCTCGATTTGTCTCGGATC 59
Query 60 GATCGCACTTGTATTATTGATCTCTCATTGTTCAACTTCTTTCTTTGATTACTCTTTTCA 119
|||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| || |
Sbjct 60 GATCGCACTTGTATTATTGATCTCTCGTTGTTCAATTTCTTTCTTCGATTACTCTCTTGA 119
Query 120 GAAATTCAAATTCTCGTTCCCAGAAGAAACTGAGCTTCGAAGAAACGTTTACACTAGTAG 179
|||||| ||||||||||||| |||| ||||||||||||||||||||| ||| |||
Sbjct 120 GAAATTTGAATTCTCGTTCCC---AGAATCTGAGCTTCGAAGAAACGTTT--ACT-CTAG 173
Query 180 TTCCGGTGAAGAAAACAGAGTCGTCGTTGATTCTCGTCATGTTTCTCAACAGATCCTCAC 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 174 TTCCGGTGAAGAAAACAGAGTCGTCGTTGATTCTCATCATGTTTCTCAACAGATCCTCAC 233
Query 240 TGTCCGATCTACTAACTCCACTTTACAGAGTAAACCGGAAAAACTAAACCGGAGAAATTT 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 ACTCCGATCTACTAATTCCACTTTACAGAGTAAACCGGAAAAACTAAACCGGAGAAATTT 293
Query 300 GGTGGAACAAGGATTAGCGAAAGCAAGAGCATCGATTTTAGAAGCTTCTTCGAATGTTAA 359
|||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct 294 GGTGGAACAAGGATTAGCGAAAGCAAGAGCTTCGATTCTAGAAGCCTCTTCGAATGTTAA 353
Query 360 CACTACATTGTTCAAATCTGATCTTCCAAACTCAGAAATTTATCGTAATCCATCAGCTTT 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 354 CACTACATTGTTCAAATCTGATCTTCCAAACCCAGAAATTTATCGTAATCCATCATCTTT 413
Query 420 ATATCG 425
||||||
Sbjct 414 ATATCG 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58963699260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5