BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25320.1
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326799 jgi|Araly1|326799|fgenesh1_pm.C_scaffold_6002019 2278 0.0
> Ahg326799 jgi|Araly1|326799|fgenesh1_pm.C_scaffold_6002019
Length=1509
Score = 2278 bits (1233), Expect = 0.0
Identities = 1426/1517 (94%), Gaps = 22/1517 (1%)
Strand=Plus/Plus
Query 1 ATGCAGAAAGTTTGCTGGCCTTACTTTGATCCTGATTTCGACAATCTTGGTGAACGCATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAGAAAGTTTGCTGGCCTTACTTTGATCCTGATTTCGACAATCTTGGTGAACGCATA 60
Query 61 TACGGTCCACCATGCAGGGTCTATATTGACAATGACAGCATTCA-AGATTGCACCGTTGT 119
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 61 TACGGTCCACCATGCAGGGTCTATATTGACAATGACAGCATT-ATAGATTGCACCGTTGT 119
Query 120 GAAGGTGAATAGTGAGAACAAACAAGGGCTTCTTCTAGAAGTGGTGCAAATCTTGACGGA 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 GAAGGTGAATAGTGAGAACAAACAAGGGCTTCTTCTAGAAGTGGTCCAAATCTTGACGGA 179
Query 180 CATGAATCTTATTATCACCAAGAGTTACATCTCTTCCGATGGTGGATGGTTCATGGATGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CATGAATCTTATTATCACCAAGAGTTACATCTCTTCCGATGGTGGATGGTTCATGGATGT 239
Query 240 TTTCCATGTTAAAGATGAGCATGGAAATAAACTCACTGATAAAAGCGTCATCAACCACAT 299
||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TTTCCATGTTAAAGACGAGTATGGCAATAAACTCACTGATAAAAGCGTCATCAACCACAT 299
Query 300 TAAACATGCCATTGGTACGAGTAGGCGAGAATCCGATTTTATAAAGGCTAGTGAAGCG-- 357
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAAACATGCTATTGGTACGAGTAGGCGAGAATCCGATTTTATAAAGGCTAGTGAAGCGCA 359
Query 358 ----------AATAACAATTCCTTGGAACCTCAATT-GGCTGATCACGGCGAACACACAG 406
|| ||||||||||||||| ||| ||| | ||||||||||||||||||||
Sbjct 360 TAACAACCCAAACAACAATTCCTTGGAATCTCCATTAAG-TGATCACGGCGAACACACAG 418
Query 407 CGATAGAGATGACCGGGACAGACCGACCGGGCCTCTTCTCAGAGATATTTGCTGCTTTCG 466
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 419 CGATAGAGATGACCGGGACAGACAGACCGGGCCTCTTCTCAGAGATATTCGCTGCTTTCG 478
Query 467 CGGACTTACATTGCAACGTCATGGAAGCTCATGCTTGGAGCCACAACGCTCGTTTGGCTT 526
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 CGGACTTACATTGCAACGTCATGGAAGCTCATGCTTGGAGCCATAACGCTCGTTTGGCTT 538
Query 527 GCATTGCCTATGTCTCTGACGACAATACTCACACTCCCATTGATGACCCGAGCCGCTTGG 586
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 GCATTGCCTATGTTTCTGACGACAATACTCATACTCCCATTGATGACCCGAGCCGCTTGG 598
Query 587 CTTCCATTGAGGACCACCTAAGTACTGTGATCCGTGCCACAGCGGATCCCGCCTCCAACT 646
|||||||||||||||| || ||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 599 CTTCCATTGAGGACCATCTCAGTACTGTGATACGTGCCACATCGGATCCTGCCTCCAACT 658
Query 647 CTACACACGTGGGTCACAAGGAAAACGAGACTGATGGGTTTCTTGCAGGACAAGGCAAAG 706
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 659 CTACACACGTGGGTCACAAGGAAAACGAAACGGATGGGTTTCTTGCGGGACAAGGCAAAG 718
Query 707 GGTGTATGAATAGCAACATGGAGAGACGGTTGCATCAGCTAATGTTATCTGTGAGAGACT 766
||||||||||||||||| | || |||||||||||||| |||||| |||| ||||||||||
Sbjct 719 GGTGTATGAATAGCAACGTTGAAAGACGGTTGCATCAACTAATGCTATCAGTGAGAGACT 778
Query 767 TTGACGAACCGTTTTGTGAGCCTTCTTCGTTGTCATTATTGTCGTCCAAGTTAGAGTACT 826
||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||
Sbjct 779 TTGACGAACCGTTTTGTGAGCCTTCGTCATTGTCCTTATTGTCGTCCAAGTTGGAGTACT 838
Query 827 GCGATCATAAGGAGAGGAAGACAACTATAGTTTCGATTGGGAATTGCGAAGAAAGAGGAT 886
| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 839 GTGATCAGAAGGAGAGGAAGACAACTATAGTTTCGATTGGGAATTGTGAAGAGAGAGGAT 898
Query 887 ACTCTATTGTCACAGTGAAATCTAAGGATCGAAGAAGGCTCATGTTTGATACAATTTGTA 946
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |
Sbjct 899 ACTCTATTGTCACAGTGAAGTCTAAGGATCGAAGAAGACTCATGTTTGATACAATATGCA 958
Query 947 CTTTGGTTGATATGCAATACGTTATCTTTCACGCCGCTCTCCGGTCTGATGGAGCTGATG 1006
|||||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||
Sbjct 959 CTTTGGTTGACATGCAATATGTTATCTTCCACGCCGCTCTACGGTCAGATGGAGCTGATG 1018
Query 1007 CTTTTCAAGAATACTTCATAAGACACATAGATGGAAGGGCATTGAACACGGAAGGCGAGA 1066
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1019 CTTTTCAGGAATACTTCATAAGACACATAGATGGAAGGGCATTGAACACCGAAGGCGAGA 1078
Query 1067 AAGAACGGGTGATTAAATGCTTGGAGGCTGCAATAGAACGCCGCGTTTGCGAGGGCGTGA 1126
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1079 AAGAACGGGTGATTAAATGCTTGGAGGCTGCAATAGAACGGCGGGTTTGCGAGGGCGTGA 1138
Query 1127 AGTTGGAGTTATGCGCAGAGAACAGAGTAGGCTTACTCTCTGACATCACTCGTGTACTAC 1186
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1139 AGTTGGAGTTATGCGCTGAGAACAGAGTAGGCTTACTCTCTGACATTACTCGTGTACTCC 1198
Query 1187 GTGAGAATGGTTTAACCGTTGTCCGTGCAGACGTGGAGACTCAAGGCCAAAAGTCTCTCA 1246
||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| ||||
Sbjct 1199 GTGAGAACGGTTTAACCGTTGTCCGCGCAGACGTGGAGACACAAGGCCAGAAGTCGCTCA 1258
Query 1247 ATGCTTTTTACGTCAGAGATATTTCCGGCAACAAAATCGATATGGAGTTTGTGGAGTCAG 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1259 ATGCTTTTTACGTCAGAGATATTTCCGGCAACAAAATCGATATGGAGTTTGTGGAATCAG 1318
Query 1307 TGAAGAAAGAGATGAGACCAATCCACCTTGAGGTCAAGAATGAAGACACAAAAATAGACA 1366
||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 1319 TGAAGAAAGAGATGAGACCGATCCACCTTGAGGTCAAGAATGAAGACACAACAACAGACA 1378
Query 1367 CAGTTGGATCGGATGAACCGACAGCCTCAGCCTCAGCCACACCGCAACGGCAACCACAAC 1426
||||||||||||||| || | ||| |||||||||| |||| |||| |||||||||||
Sbjct 1379 TAGTTGGATCGGATGA-CC--C-GCC--AGCCTCAGCCGCACCACAACCGCAACCACAAC 1432
Query 1427 CGCACCGTTTCTCGCTTGGTGACATCCTTCGATCACAGATGGAACGCCTTTCTCTCAACT 1486
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1433 CTCACCGTTTCTCGCTTGGTGACATCCTTCGTTCACAGATCGAACGCCTTTCTCTCAACT 1492
Query 1487 TCGTCCCAACCAAATGA 1503
|||||||||||||||||
Sbjct 1493 TCGTCCCAACCAAATGA 1509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56259291865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5