BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25330.1
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489384 jgi|Araly1|489384|fgenesh2_kg.6__2518__AT5G25330.1 1808 0.0
> Ahg489384 jgi|Araly1|489384|fgenesh2_kg.6__2518__AT5G25330.1
Length=1253
Score = 1808 bits (979), Expect = 0.0
Identities = 1130/1204 (94%), Gaps = 5/1204 (0%)
Strand=Plus/Plus
Query 47 TAAAAATGTTGGCCTTATATTTCATTCTACTCGTCTGCGTGCCCT-TAGGTGTCATCATG 105
|||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||||
Sbjct 31 TAAAAATGTTAGCCTTATATTTCATTCTACTCGTATGCGTG-CCTCTAGGTGTCATCATG 89
Query 106 ACCGTGACGAGTCCTCGACTAGCCATCACTGTGGCCGTCACTCAGCCGGCGGTCTTAATA 165
||| | ||||||||||||||||| || ||||||||||||||| |||||||||||||| ||
Sbjct 90 ACCTTTACGAGTCCTCGACTAGCTATTACTGTGGCCGTCACTAAGCCGGCGGTCTTAGTA 149
Query 166 ATACAAAATCCCAATAATAACCTCACATCTCCTCAAGTAATTACATCTCAGCCACTGGAT 225
||||||||| ||||||||| ||| |||||||||| ||||||||| |||||||||||||||
Sbjct 150 ATACAAAATTCCAATAATACCCTTACATCTCCTCGAGTAATTACTTCTCAGCCACTGGAT 209
Query 226 CACGATGAGTTACTCCTTCGTCAAGCTTCTAAAGCCAACCCAAACCCTTCACCTAAATTT 285
|||||||| ||||||||||||||||||||||||| | ||| |||||||||||| ||||||
Sbjct 210 CACGATGACTTACTCCTTCGTCAAGCTTCTAAAGTCGACCTAAACCCTTCACCCAAATTT 269
Query 286 CCCAAAAAACTAGCTTTCATGTTCTTAACAACGAACTCTCTTCCACTTGCACCACTTTGG 345
||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 270 CCCAAAAAACTCGCTTTCATGTTCTTAACAACTAACTCTCTTCCATTTGCACCGCTTTGG 329
Query 346 GAGCtttttttCAACCAAAGCTCTCATCACAAGTCTCTTTACAATGTCTACGTCCATGTA 405
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 330 GAGCTTTTTTTCAACCAAAGCTCTGATCATAAGTCTCTTTACAATGTCTACGTCCATGTA 389
Query 406 GACCCGACTCAAAAACACAAACCGGGTTCTCACGGCACATTTCAAAACCGGATCATACCA 465
|||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||
Sbjct 390 GACCCGACTCAAAAACACGAACCGGGTTCTTACGGCACGTTTCATAACCGGATCATACCT 449
Query 466 TCCTCAAAACCGGCTTACAGGCACACCCCAACCCTCATCTCAGCCGCACGTCGTTTACTA 525
|||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 450 TCCTCAAAACCGGCTTACCGGCACACCCCAACACTTATCTCAGCCGCACGTCGTTTACTA 509
Query 526 GCCCATGCGCTTCTCGAGGACCCGTCTAATTACATGTTTATCCTTCTCTCCCCTTCTTGC 585
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 GCTCATGCGCTTCTCGATGACCCGTCTAATTACATGTTTATCCTTCTCTCCCCTTCTTGC 569
Query 586 ATTCCTTTGCACTCCTTTAACTTCACTTACAAGACACTAGTCTCCTCCACAAAGAGCTTC 645
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 570 ATTCCTTTGCACTCCTTTAACTTCACTTACAAGACACTAGTCTCATCCACAAAGAGCTTC 629
Query 646 ATCGAAATTCTCAAAGACGAACCAGGGTGGTACGAAAGGTGGGCAGCGCGTGGACCCTAC 705
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 ATCGAGATTCTTAAAGACGAACCAGGGTGGTACGAAAGGTGGGCAGCGCGTGGACCCTAC 689
Query 706 GCGATGTTCCCCGAGGTACCACCCGAGGAGTTCCGAATAGGATCACAGTTCTGGACGTTG 765
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct 690 GCGATGTTCCCCGAGGTACCACCCGAGGAGTTTCGAATCGGCTCACAGTTCTGGACATTG 749
Query 766 ACACGAGCCCATGCGCTGATGGTGGTGAGTGACGTGGAGATATGGTCCAAGTTTAACAAG 825
|||||||| ||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 750 ACACGAGCACATGCGCAGTTAGTGGTGAGTGACGTGGAGATATGGTCCAAGTTTAACAAG 809
Query 826 TCATGCGTAAGAGAAGACATATGTTACCCCGAAGAACATTACTTCCCTACTCTCCTTAAC 885
|| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 810 TCTTGCGTAAGAAAAGACATATGTTACCCCGAGGAACATTACTTCCCTACTCTCCTCCAC 869
Query 886 ATGCGAGACCCACAAGGGTGTGTATCCGCTACGGTCACGCACGTTGATTGGAGCGTCAAC 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 ATGCGAGACCCACAAGGGTGTGTATCCGCTACGGTCACGCACGTTGATTGGAGCGTCAAC 929
Query 946 GACCATGGTCATCCTCGGACATATAAACCGTTGGAGGTTAGGGCTGAGCTTATACAAAAG 1005
|| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 930 GAACATGGTCATCCTCGGACGTATAAACCGTCGGAGGTTAGGGCTGAGCTTATACAAAAG 989
Query 1006 CTGAGAAGTGCACGGCCTAGGTATGGGGACGGCAACCGAACGAGGAAAGATCCATTTCTT 1065
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 CTGCGAAGTGCACGGCTTAGGTATGGGGACGGCAACCGAACGAGGAAAGATCCATTTCTT 1049
Query 1066 TTCGCCCGGAAATTTTCTCCGGCCGGGATCAATCAGTTGATGAACATAACTCGAAGTGTC 1125
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1050 TTCGCTCGGAAATTTTCTCCGGCCGGGATCAGTCAGTTGATGAACATAACTCGAAATGTC 1109
Query 1126 ATCTTTAACGATTCGGCTCTTGTGTAAATTATAGTATTTGGTATTTCA-GTTGAGACTTT 1184
||||||||||||| |||||| ||||||| ||||| || | | ||| | ||| |||||||
Sbjct 1110 ATCTTTAACGATTTGGCTCTCGTGTAAAGTATAGAATACGTTGTTT-ATGTTTAGACTTT 1168
Query 1185 AGGGGACTTGATTTGGTTTCATTTGA-GATTTTTCGTATGTTTAAACATGTATGCGTGGA 1243
|||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 1169 AGGGGACTTGATTTGGTTTCATTTTAAGATTTTTCTTATGTTTAAACATGTATGCGTGGA 1228
Query 1244 TGTA 1247
||||
Sbjct 1229 TGTA 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48644842092
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5