BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25340.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894442 jgi|Araly1|894442|Al_scaffold_0006_2438 953 0.0
Ahg489386 jgi|Araly1|489386|fgenesh2_kg.6__2520__AT5G25350.1 442 3e-123
> Ahg894442 jgi|Araly1|894442|Al_scaffold_0006_2438
Length=627
Score = 953 bits (516), Expect = 0.0
Identities = 591/628 (94%), Gaps = 2/628 (0%)
Strand=Plus/Plus
Query 221 ATGGGAAGCTTTCATCGCCGGACTTTTTCTTATGATAAACTTCCGAACGAACCCATTAGG 280
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGGAAGCTTTCATCGCCGGACATTTTCTTATGATAAACTTCCGACCGAACCCATTAGG 60
Query 281 CTCTCCGTTCTCAAACTAGATGGCTCTTCCTTTGATGTTTACGTATTGACCTCGGCCACC 340
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTCTGTTCTCAAACTGGATGGCTCTTCCTTTGATGTTTACGTATTGACCTCGGCCACC 120
Query 341 GTTGGGGATCTCAAGGTTGCTATAGAAACTGCCTTCAGCCATGTCCCCAAGAAGGGACCC 400
||||||||||| |||||||| ||||| |||||||| ||||| |||||||||||||||||
Sbjct 121 GTTGGGGATCTTAAGGTTGCCATAGAGACTGCCTTTAGCCACATCCCCAAGAAGGGACCC 180
Query 401 TCCAAGATCTCATGGTCACACGTATGGGGGCATTTTTGTTTGTGTTTCGGAGGTCAGAAG 460
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCAAGATATCATGGTCACACGTGTGGGGGCATTTTTGTTTGTGTTTCGGAGGTCAGAAG 240
Query 461 TTAATTACCGATACGGATTGCATCGGAAATTATGGGATGAAGGACGGTGATGAGGTTAGG 520
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||
Sbjct 241 TTAATTACCGATACGGATTGCATCGGAAGTTATGGGCTGAAGGACGGTGATGAGGTAAGA 300
Query 521 TTCAAAAACCATGTATCCGGCAATGCGGTATTGAGCAAGGGATATTCTAGGAAATCCAAA 580
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCAAAAACCATGTGTCAGGCAATGCGGTATTGAGCAAGGGATATTCTAGGAAATCCAAA 360
Query 581 CAAAAGAATTTAGAGAGGGTATTGCCAAAGGATGGAGATGAAGTATTGAATAGGATTGAA 640
|||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||
Sbjct 361 CAAAAGAATTTAGAGAGGGTATTGCCAAAGGATGTAGATGAAGTAATGAATAGAATTGAA 420
Query 641 GAGATTGATGACTCTTGGGATGATCTTGAGAGAGGAGGTTTAGTGATGTACAAAGATGAT 700
|||||||||||| ||||||||||||| |||| |||||| || || | |||||||||||||
Sbjct 421 GAGATTGATGACACTTGGGATGATCTCGAGAAAGGAGGCTTCGTTAGGTACAAAGATGAT 480
Query 701 GACATGGAAACTTCTTCAAATGAAAGCAACAGGTCTTGTCTATCCACTGTAC-ATGGTTG 759
||||| |||||||||||||||||||||| |||||||||||||||| ||||| | |||||
Sbjct 481 GACATAGAAACTTCTTCAAATGAAAGCAGTAGGTCTTGTCTATCCAGTGTACGA-GGTTG 539
Query 760 CTGCTTTGCTTTCGGTTTAAAAGAGCTTCTTGGGTTTGGTAATGACAGAGCTTATTACTC 819
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTGCTTTGCTTTGGGTTTAAAGGAGCTTCTTGGGTTTGGTAATGACAGAGCTTATTACTC 599
Query 820 TTTGAGAGATACTTGGAGAGACGATTGA 847
||| ||||||||||||||||||||||||
Sbjct 600 TTTAAGAGATACTTGGAGAGACGATTGA 627
> Ahg489386 jgi|Araly1|489386|fgenesh2_kg.6__2520__AT5G25350.1
Length=2447
Score = 442 bits (239), Expect = 3e-123
Identities = 276/294 (94%), Gaps = 2/294 (1%)
Strand=Plus/Minus
Query 1034 ACAGATGGAAGAAGATAAAAGGCACTATCACGAACCTAAACCAAAGAACAAATGAC-TTC 1092
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 2243 ACAG-TGGAAGAAGATAAAAGGCACTATCACGAACCTAAACCAAAGAACAAAGGACTTTC 2185
Query 1093 TACAAGAACTTTACTGAACATAGAGAGACAACAACTCCAAAAAGACGGTCAAGACTAAAC 1152
||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 2184 TACAAGAACTTGACTGAATATAGAGAAACAACAACTCCAAAAAGACGGTCAAGACTAAAC 2125
Query 1153 CCTAAACTAGATTACCAGAACTCAGTGACAGGCTTCACAAAAACACTAACAGTTGTAGAA 1212
|||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||
Sbjct 2124 CCTAAACTAGATTACCAGAACTCAGTGACAGGATTCACAGGAACACTAACGGTTGTAGAA 2065
Query 1213 ACAGGCTCCTTTGTTTAGAAGGAACCTGCCAAAAATTTTAAAAAACAACTGCAGTGTCCT 1272
||| |||||||||||||||||||||||||||||| ||||||||||||| || | |||||
Sbjct 2064 GCAGACTCCTTTGTTTAGAAGGAACCTGCCAAAAAATTTAAAAAACAACCGCTGCGTCCT 2005
Query 1273 GAGAAAGAAACTAAGTTCTAGGTGGAATCTATGGGTTTTAGCGACCAAAACCTA 1326
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2004 GGGAAAGAAACTAAGTTCTAGGTGGAATCTATGGGTTTTAGTGACCAAAACCTA 1951
Score = 108 bits (58), Expect = 1e-22
Identities = 72/78 (92%), Gaps = 3/78 (4%)
Strand=Plus/Minus
Query 964 TAATAGAGAGTACAAAGTTACAATGATTCATAAG--TACAAGATAGTGCCTTAAACAAAA 1021
||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2399 TAATATAGAGTACATAGTTACAATGATTCAGAAGTATACAAGATAGTGCCTTAAACAAAA 2340
Query 1022 AAGTGGGAAAAAA-CAGA 1038
||||||||||||| ||||
Sbjct 2339 AAGTGGGAAAAAAACAGA 2322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5