BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25350.1
Length=2600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489386 jgi|Araly1|489386|fgenesh2_kg.6__2520__AT5G25350.1 2329 0.0
> Ahg489386 jgi|Araly1|489386|fgenesh2_kg.6__2520__AT5G25350.1
Length=2447
Score = 2329 bits (1261), Expect = 0.0
Identities = 1423/1499 (95%), Gaps = 19/1499 (1%)
Strand=Plus/Plus
Query 1031 CTGTTACTGATCTTGTGCTTCATGGACTTCAAGGTGTGAATGAGAAAGGCTTCTGGGTTA 1090
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 915 CTGTTACTGATCTTGTGCTTCATGGCCTTCAAGGTGTGAATGAGAAAGGCTTCTGGGTTA 974
Query 1091 TGGGAAATGCAAAAGGGTTGAAGAAACTGAAGTCCCTCTCAGTAATGTCGTGCAGAGGTA 1150
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
Sbjct 975 TGGGAAATGCAAAAGGGCTGAAGAAACTGAAGTCCCTCTCAGTAATGTCGTGCCGAGGCA 1034
Query 1151 TGACCGATGTTGGGCTCGAAGCTGTTGGAAATGGTTGCCCTGATCTGAAGCATGTCTCTC 1210
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TGACGGATGTTGGGCTTGAAGCTGTTGGAAATGGTTGCCCTGATCTGAAGCATGTCTCTC 1094
Query 1211 TGAACAAATGCTTGCTTGTTTCTGGTAAAGGACTTGTCGCTTTGGCCAAATCTGCATTGT 1270
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 TGAACAAATGTTTGCTTGTTTCTGGTAAAGGACTTGTCGCTTTGGCCAAATCTGCATTGT 1154
Query 1271 CACTTGAAAGTTTGAAACTTGAAGAATGCCACAGGATCAACCAGTTTGGTCTTATGGGTT 1330
| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 CGCTGGAAAGTTTGAGACTTGAAGAATGCCACAGGATCAACCAGTTTGGTCTTATGGGTT 1214
Query 1331 TTCTCATGAACTGTGGCTCAAAGTTGAAAGCTTTCTCTTTGGCAAACTGTCTGGGCATCA 1390
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1215 TTCTCAGGAACTGTGGCTCAAAGTTGAGAGCTTTCTCTTTGGCAAACTGTCTGGGCATCA 1274
Query 1391 GTGACTTCAACTCAGAATC-CTCTCTGCCATCACCCAGTTGCAGCTCTTTACGTTCTCTG 1449
|||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GTGACTTCAACTTAGAATCAC-CTCTGCCATCACCCAGTTGCAGCTCTTTACGTTCTCTG 1333
Query 1450 TCAATCCGATGCTGCCCTGGGTTTGGGGATGCAAGTCTCGCTTTCTTGGGAAAGTTCTGT 1509
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1334 TCAATCCGATGCTGCCCTGGGTTTGGGGATGCAAGTCTCACTTTCTTGGGAAATTTCTGT 1393
Query 1510 CATCAGCTTCAGGATGTTGAACTCTGTGGACTAAACGGAGTGACAGATGCAGGTGTGCGC 1569
||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct 1394 CATCAGCTTCAGGATGTTGAACTTTGTGGACTGAATGGAGTGACAGATGCAGGTGTACGC 1453
Query 1570 GAGTTGCTACAGAGCAACAATGTTGGTCTAGTGAAGGTGAACCTGAGCGAATGTATCAAT 1629
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1454 GAGTTGCTTCAGAGCAACAATGTTGGTCTAGTGAAGGTGAACCTGAGCGGATGTATCAAT 1513
Query 1630 GTTTCAGACAACACAGTCTCTGCAATTTCTGTTTGCCACGGACGCACATTGGAGTCTCTT 1689
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1514 GTTTCAGACAACACAGTCTCTGCAATTTCCATTTGCCACGGACGCACATTGGAGTCTCTT 1573
Query 1690 AACCTTGACGGCTGCAAGAACATCACAAACGCAAGCCTTGTCGCAGTAGCCAAGAACTGC 1749
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1574 AACCTTGACGGCTGCAAGAACATCAGTGACGCAAGCCTTGTCGCAGTAGCCAAGAACTGC 1633
Query 1750 TACTCAGTCAATGACCTTGACATCTCAAATACTTTGGTCTCAGATCACGGAATCAAGGCC 1809
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 TACTCAGTCAATGACCTTGACATCTCAAATACTTTGGTCTCAGATCACGGAATCAAGGCT 1693
Query 1810 TTGGCATCTTCTCCTAACCATCTGAATCTTCAGGTTCTTTCCATTGGCGGCTGCTCCTCA 1869
|||||||||||||| |||||||||||||||||||||||||| |||| |||||||| |
Sbjct 1694 TTGGCATCTTCTCCCAACCATCTGAATCTTCAGGTTCTTTCTGTTGGTGGCTGCTCAGCG 1753
Query 1870 ATTACAGACAAAAGCAAGGCATGCATACAAAAACTCGGCCGCACGCTTTTGGGATTAAAC 1929
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1754 ATTACAGACAAAAGCAAGGCATGCATACAAAAACTCGGCCGCACGCTTTTAGGACTAAAC 1813
Query 1930 ATCCAACGTTGTGGCAGAATCAGCAGCAGCACTGTGGATACTCTTCTCGAAAATCTATGG 1989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1814 ATCCAACGTTGTGGCAGAATCAGCAGCAGCACTGTGGATACTCTTCTCGAAAATCTATGG 1873
Query 1990 AGGTGCGATATACTCTACTAAATTCCCACTTTTTCTACAAAACCTTAGTATCATCATCAT 2049
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1874 AGGTGCGATATACTCTACTAAA-TCCCACTTTTTCTACAAAACCGTAGTATCATCATCAT 1932
Query 2050 CAGTCCAAGTCTTTTTCCTAGGTTTTGGTCGCTAAAACCCATAGATTCCACCTAGAACTT 2109
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1933 CAGTCCAAGTCTTTTTCCTAGGTTTTGGTCACTAAAACCCATAGATTCCACCTAGAACTT 1992
Query 2110 AGTTTCTTTCTCAGGACACTGCAGTTGTTTTTTAAAATTTTTGGCAGGTTCCTTCTAAAC 2169
|||||||||| |||||| | || ||||||||||||| |||||||||||||||||||||||
Sbjct 1993 AGTTTCTTTCCCAGGACGCAGCGGTTGTTTTTTAAATTTTTTGGCAGGTTCCTTCTAAAC 2052
Query 2170 AAAGGAGCCTGTTTCTACAACTGTTAGTGTTTTTGTGAAGCCTGTCACTGAGTTCTGGTA 2229
||||||| ||| ||||||||| ||||||||| |||||| ||||||||||||||||||||
Sbjct 2053 AAAGGAGTCTGCTTCTACAACCGTTAGTGTTCCTGTGAATCCTGTCACTGAGTTCTGGTA 2112
Query 2230 ATCTAGTTTAGGGTTTAGTCTTGACCGTCTTTTTGGAGTTGTTGTCTCTCTATGTTCAGT 2289
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2113 ATCTAGTTTAGGGTTTAGTCTTGACCGTCTTTTTGGAGTTGTTGTTTCTCTATATTCAGT 2172
Query 2290 AAAGTTCTTGTAG-AAGTCATTTGTTCTTTGGTTTAGGTTCGTGATAGTGCCTTTTATCT 2348
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2173 CAAGTTCTTGTAGAAAGTCCTTTGTTCTTTGGTTTAGGTTCGTGATAGTGCCTTTTATCT 2232
Query 2349 TCTTCCACTGTAGAGCTTTTGGCAATGGCGGTGTAACTTCTTAATCCGCCATTACAACTC 2408
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2233 TCTTCCACTGTAGAGCTTTTGGCAATGGCGGTGTAACTTCTTAATCCGCCATTACGACTC 2292
Query 2409 TTCGGAGTTGtttttttGTGTGTTATGTATCTGCCAAAAGCTCTGTTTTTT-CCCACTTT 2467
||||||||| ||||||| | | ||||||||||||||||||||| ||||||||
Sbjct 2293 TTCGGAGTT-TTTTTTT-T-T---------CTGCCAAAAGCTCTGTTTTTTTCCCACTTT 2340
Query 2468 TTTGTTTAAGGCACTATCTTGTA--CTTATGAATCATTGTAACTTTGTACTCTCTATTA 2524
||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |||||
Sbjct 2341 TTTGTTTAAGGCACTATCTTGTATACTTCTGAATCATTGTAACTATGTACTCTATATTA 2399
Score = 1134 bits (614), Expect = 0.0
Identities = 754/820 (92%), Gaps = 15/820 (2%)
Strand=Plus/Plus
Query 18 Atttcttctgtaaaaatcttctctttttgccctaatcttctagggttcttcttc-ttttc 76
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1 ATTTCTTCTGTAAAAATCTTCTCTTTTTGCCCTAATCTTCTAGGGTTCTTC-TCTTTTTC 59
Query 77 atgaatcttagtcttcgatctct-tcaaatcttcgtctttcttcttcaaatcttcttcga 135
|||||||||||||||| |||||| | | ||||||||||| ||||||||||| |||||||
Sbjct 60 ATGAATCTTAGTCTTCAATCTCTAT-TATTCTTCGTCTTTGTTCTTCAAATCGTCTTCGA 118
Query 136 attatgtctggaatcttcAGATTTAGTGGTGATGAAGATTGTTTACTTGGGGG---ATCG 192
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 119 ATTATGTCTGGAATCTTCAGATTTAGTGGTGATGAAGATTGTTTTCTTGGGGGATCATCG 178
Query 193 ATGTATCTATCACCAGGGAGCTGTCCCGGTGTATATTACCCAGCGCGTAAGAGGTTACGT 252
||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 179 ATGTATCTATCACCAGGGAGCTGTCCCGGCGTGTATTTCCCAGCGCGTAAGAGGTTACGT 238
Query 253 GTTGCTGCGACGTC-GTTTTACAGCGGTTTTGAGGAGAAGCAAACTTCAATCGATGTATT 311
| |||||| || | ||||| ||||||||| |||||||||||||| || |||||||||||
Sbjct 239 ATCGCTGCGCCGACGGTTTT-CAGCGGTTTCGAGGAGAAGCAAACATCGATCGATGTATT 297
Query 312 GCCTGAAGAGTGTTTATTTGAGATTCTAAGACGTTTACCTTCTGGACAAGAGAGGAGTGC 371
||| || ||||| || ||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 298 GCCAGATGAGTGCTTGTTTGAGATTCTCAGACGTTTACCTTCTGGAGAAGAGAGGAGTGC 357
Query 372 TTGCGCTTGTGTTTCCAAGCATTGGCTTAATCTTTTGAGTAGTATCAGTAGGAGTGAAGT 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTGCGCTTGTGTTTCCAAGCATTGGCTTAATCTTTTGAGTAGTATCAGTAGGAGTGAAGT 417
Query 432 GAATGAGTCATCAGTTCAAGATGTGGAGGAGGGTGAAGGGTTTTTGTCTAGGAGTTTGGA 491
|||||||||| ||||||||||| |||| | ||||||||||||||| || ||||| ||
Sbjct 418 GAATGAGTCA---GTTCAAGATGTTGAGG-G--TGAAGGGTTTTTGTCAAGAAGTTTAGA 471
Query 492 GGGGAAGAAGGCGACGGATTTGAGGTTGGCGGCGATTGCGGTTGGGACGTCGAGTCGTGG 551
||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||
Sbjct 472 GGGTAAGAAGGCGACGGATTTGAGGTTGGCAGCGATTGCAGTTGGGACATCGAGTCGAGG 531
Query 552 TGGGTTGGGGAAGCTTCAGATTCGTGGGAGTGGGTTTGAGAGTAAGGTGACTGATGTTGG 611
|||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||
Sbjct 532 AGGGTTGGGGAAGCTTCAGATTCGTGGGAGTGGTTTTGATAGCAAAGTGACTGATGTTGG 591
Query 612 TCTTGGTGCTGTTGCTCATGGTTGTCCATCTCTTAGGATTGTTTCTTTATGGAACTTGCC 671
|||||| |||||||||||||||||||||||||||||| || ||||| |||||||||| ||
Sbjct 592 TCTTGGGGCTGTTGCTCATGGTTGTCCATCTCTTAGGGTTCTTTCTCTATGGAACTTACC 651
Query 672 TGCTGTTAGTGATTTGGGTTTGTCTGAGATCGCACGGTCATGCCCGATGATTGAAAAACT 731
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 652 TGCTGTTAGTGATATGGGTTTGTCTGAGATCGCACGGTCATGCCCGATGATTGAAAAAGT 711
Query 732 TGACCTTTCACGGTGTCCTGGAATAACTGACAGTGGATTGGTTGCTATTGCTGAGAACTG 791
||||||||| || ||||| ||||||||||||| ||| |||||||| |||||||||| |||
Sbjct 712 TGACCTTTCTCGATGTCCAGGAATAACTGACAATGGTTTGGTTGCAATTGCTGAGAGCTG 771
Query 792 TGTGAATCTGAGTGATCTGACGATTGATTCTTGCTCTGGT 831
|||||||||||||||||||||||||||||| |||||||||
Sbjct 772 TGTGAATCTGAGTGATCTGACGATTGATTCGTGCTCTGGT 811
Score = 158 bits (85), Expect = 3e-37
Identities = 97/103 (94%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 864 ACGTTGTGTCAATCTGAGATCTATCTCTATCAGGAGCTGCCCACGTATTGGTGATCAAGG 923
||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 812 ACGTTGTATCAATCTGAGATCTATCTCTATCAGGAGCTGCCCTCGCATTGGAGATCAAGG 871
Query 924 TGTTGCCTTCCTCTTGGCTCAAGCTGGTTCTTACTTGACGAAA 966
|||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 872 TGTTGCTTTCCTCTTGGCCCAAGCTGGTTCTTACTTGACGAAA 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98044290630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5