BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25360.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489387 jgi|Araly1|489387|fgenesh2_kg.6__2521__AT5G25360.1 941 0.0
> Ahg489387 jgi|Araly1|489387|fgenesh2_kg.6__2521__AT5G25360.1
Length=770
Score = 941 bits (509), Expect = 0.0
Identities = 584/618 (94%), Gaps = 13/618 (2%)
Strand=Plus/Plus
Query 221 TTGTAGATGCATCTCCGTGAAATCATTCCCTCTTGGATCTACCAGTTATTTGGTTGCATG 280
||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 155 TTG-AGATGCATCTCTGTGAAATTATTCCCTCTTGGATCTACCAGTTATTTGGTTGCATG 213
Query 281 GGAGGTTGTTTTGGATGCTGCAATAAACCACCGCTTATAGTTGCAGTGGATGAGCCGTCT 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GGAGGTTGTTTTGGATGCTGCAATAAACCACCGCTTATAGTTGCAGTGGATGAGCCGTCT 273
Query 341 AAAGGGTTAAGGATTCAAGGTCGTTTAGTGAAGAAGCCAAGCGTATCAGAGGACTTCTGG 400
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 274 AAAGGGTTAAGGATTCAAGGTCGTTTAGTGAAGAAGCCAAGCGTATCAGACGACTTTTGG 333
Query 401 AGCACAAGCACCTGCGAGATGGATAATAGTACACTTCAGTCACAGAGAAGCATGTCTTCT 460
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 334 AGCACAAGCACTTGCGAGATGGATAACAGCACACTTCAGTCACAGAGAAGCATGTCTTCT 393
Query 461 ATTAGCTTCACTAACAATACTTCTACTTCTGCAAGTACAAGCAACCCCACAGAATTTGTA 520
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 394 ATCAGCTTCACTAACAATACTTCTACTTCTGCAAGTACAAGTAACCCCACAGAATTTGTA 453
Query 521 AACCACGGATTGAACCTCTGGAACCAAACTAGGCAACAGTGGCTTGCAAATGGAACTTCT 580
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 454 AACCATGGATTGAACCTCTGGAACCAAACTAGGCAACAATGGCTTGCAAATGGAACTTCT 513
Query 581 CaaaaaaaGGCCAAAGTTCGAGAACCTACAATAAGCTGGAATGCAACATATGAGAGCTTG 640
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 CATAAAAAGGCCAAACTTCGAGAACCTACAATAAGCTGGAATGCAACATATGAGAGCTTG 573
Query 641 TTGGGTATGAACAAGCGGTTTTCTCGTCCAATACCACTCCCTGAAATGGTGGATTTTTTG 700
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 574 TTGGGTATGAACAAGCGGTTTTCTCGTCCAATACCTCTCCCTGAAATGGTCGATTTTCTG 633
Query 701 GTGGATGTGTGGGAGCAAGAAGGCTTGTATGATTGATTTGCAACTCTTTAAACTTAATTT 760
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 634 GTGGATGTGTGGGAGCAAGAAGGCTTGTATGATTGATTTGCAACTCTTGAAACTTAATTT 693
Query 761 AGTTTCATCTTTT--CTTT-T--A-TGTGTGTAATCAAAAGAA----G-AACTTGGATTT 809
|||||||||||| |||| | | ||||||||||||||| | | |||||||||||
Sbjct 694 GGTTTCATCTTTTTTCTTTCTTTAATGTGTGTAATCAAAA-ATTTCCGGAACTTGGATTT 752
Query 810 TTAGACTTGGCTTCCTGA 827
||| || |||||||||||
Sbjct 753 TTAAACCTGGCTTCCTGA 770
Score = 244 bits (132), Expect = 7e-64
Identities = 150/159 (94%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 1 ACACGCATAACTAAACGAAGAAGAAGaaaaaaaaaaaaaaaaCGAACAACGAAGAAGACG 60
||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||| |
Sbjct 1 ACACGCATAACTAAAGGAAGAAGAAGACGAAGAAAAAAAAAACGAACAAAGAAGAAGAAG 60
Query 61 AAGACGAAGAAACAAAGATAAAGGCTTTAGATTTAGCTGCAGGGGAGGTGGCGGAACAAA 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AAGACGAAGAAACAAAGATAAAGGCTTTAGATTTAGCTGCAAGGGAGGTGGCGGAACAAA 120
Query 121 ACCCTAATCCTAATTTTCCCCGAATATGCCATTTTTGAG 159
|||||||||| |||||||| |||||||||||||||||||
Sbjct 121 ACCCTAATCCCAATTTTCCTCGAATATGCCATTTTTGAG 159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5