BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25360.1 Length=960 Score E Sequences producing significant alignments: (Bits) Value Ahg489387 jgi|Araly1|489387|fgenesh2_kg.6__2521__AT5G25360.1 941 0.0 > Ahg489387 jgi|Araly1|489387|fgenesh2_kg.6__2521__AT5G25360.1 Length=770 Score = 941 bits (509), Expect = 0.0 Identities = 584/618 (94%), Gaps = 13/618 (2%) Strand=Plus/Plus Query 221 TTGTAGATGCATCTCCGTGAAATCATTCCCTCTTGGATCTACCAGTTATTTGGTTGCATG 280 ||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 155 TTG-AGATGCATCTCTGTGAAATTATTCCCTCTTGGATCTACCAGTTATTTGGTTGCATG 213 Query 281 GGAGGTTGTTTTGGATGCTGCAATAAACCACCGCTTATAGTTGCAGTGGATGAGCCGTCT 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214 GGAGGTTGTTTTGGATGCTGCAATAAACCACCGCTTATAGTTGCAGTGGATGAGCCGTCT 273 Query 341 AAAGGGTTAAGGATTCAAGGTCGTTTAGTGAAGAAGCCAAGCGTATCAGAGGACTTCTGG 400 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 274 AAAGGGTTAAGGATTCAAGGTCGTTTAGTGAAGAAGCCAAGCGTATCAGACGACTTTTGG 333 Query 401 AGCACAAGCACCTGCGAGATGGATAATAGTACACTTCAGTCACAGAGAAGCATGTCTTCT 460 ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 334 AGCACAAGCACTTGCGAGATGGATAACAGCACACTTCAGTCACAGAGAAGCATGTCTTCT 393 Query 461 ATTAGCTTCACTAACAATACTTCTACTTCTGCAAGTACAAGCAACCCCACAGAATTTGTA 520 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 394 ATCAGCTTCACTAACAATACTTCTACTTCTGCAAGTACAAGTAACCCCACAGAATTTGTA 453 Query 521 AACCACGGATTGAACCTCTGGAACCAAACTAGGCAACAGTGGCTTGCAAATGGAACTTCT 580 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 454 AACCATGGATTGAACCTCTGGAACCAAACTAGGCAACAATGGCTTGCAAATGGAACTTCT 513 Query 581 CaaaaaaaGGCCAAAGTTCGAGAACCTACAATAAGCTGGAATGCAACATATGAGAGCTTG 640 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 514 CATAAAAAGGCCAAACTTCGAGAACCTACAATAAGCTGGAATGCAACATATGAGAGCTTG 573 Query 641 TTGGGTATGAACAAGCGGTTTTCTCGTCCAATACCACTCCCTGAAATGGTGGATTTTTTG 700 ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| || Sbjct 574 TTGGGTATGAACAAGCGGTTTTCTCGTCCAATACCTCTCCCTGAAATGGTCGATTTTCTG 633 Query 701 GTGGATGTGTGGGAGCAAGAAGGCTTGTATGATTGATTTGCAACTCTTTAAACTTAATTT 760 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 634 GTGGATGTGTGGGAGCAAGAAGGCTTGTATGATTGATTTGCAACTCTTGAAACTTAATTT 693 Query 761 AGTTTCATCTTTT--CTTT-T--A-TGTGTGTAATCAAAAGAA----G-AACTTGGATTT 809 |||||||||||| |||| | | ||||||||||||||| | | ||||||||||| Sbjct 694 GGTTTCATCTTTTTTCTTTCTTTAATGTGTGTAATCAAAA-ATTTCCGGAACTTGGATTT 752 Query 810 TTAGACTTGGCTTCCTGA 827 ||| || ||||||||||| Sbjct 753 TTAAACCTGGCTTCCTGA 770 Score = 244 bits (132), Expect = 7e-64 Identities = 150/159 (94%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1 ACACGCATAACTAAACGAAGAAGAAGaaaaaaaaaaaaaaaaCGAACAACGAAGAAGACG 60 ||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||| | Sbjct 1 ACACGCATAACTAAAGGAAGAAGAAGACGAAGAAAAAAAAAACGAACAAAGAAGAAGAAG 60 Query 61 AAGACGAAGAAACAAAGATAAAGGCTTTAGATTTAGCTGCAGGGGAGGTGGCGGAACAAA 120 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 AAGACGAAGAAACAAAGATAAAGGCTTTAGATTTAGCTGCAAGGGAGGTGGCGGAACAAA 120 Query 121 ACCCTAATCCTAATTTTCCCCGAATATGCCATTTTTGAG 159 |||||||||| |||||||| ||||||||||||||||||| Sbjct 121 ACCCTAATCCCAATTTTCCTCGAATATGCCATTTTTGAG 159 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35644927395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5