BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25380.1
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489392 jgi|Araly1|489392|fgenesh2_kg.6__2526__AT5G25380.1 1784 0.0
Ahg906129 jgi|Araly1|906129|Al_scaffold_0003_3257 76.8 4e-13
> Ahg489392 jgi|Araly1|489392|fgenesh2_kg.6__2526__AT5G25380.1
Length=1302
Score = 1784 bits (966), Expect = 0.0
Identities = 1206/1320 (91%), Gaps = 24/1320 (2%)
Strand=Plus/Plus
Query 1 ATGCATAGAGCTTCTTCTAAGCACACTAATGCGAAGAAAGAAGCAATCTCTACTTCGAAA 60
||| |||||| |||||| |||||| ||||||| | ||| ||||||||||||||| |||||
Sbjct 1 ATGTATAGAGTTTCTTCAAAGCACCCTAATGCCACGAAGGAAGCAATCTCTACTACGAAA 60
Query 61 ATTCGAGATAATAATGTGAGAGTCACTAGATCAAGAGCTAAGGCCTTAGGAGTGTCGAAT 120
||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| |||
Sbjct 61 ATTCGAGATAATAATGTGAGAATCACTAGATCAAAAGCTAAAGCCTTAGGAGTGTC-AAT 119
Query 121 -TCTCCATCAAAACCCGCTTTTAAACATGAAACGAAGCGTGTTGCTAGACCGAGTAATAA 179
||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||| ||
Sbjct 120 GTCTCCCTCAAAACCCGCTTTTAAACAGGAACCAAAGCGTGTTGCTAGACCGAGTAACAA 179
Query 180 ACGAATGGCATCGGATAATATCACAGTTTGTAATCAGAAAAGACGAGCGGTGCTCAAGGA 239
|||||||||||||||| | | || | | ||| || || ||||| ||||||||||||||
Sbjct 180 ACGAATGGCATCGGAT-GT-T-ACTGCCTATAAGCATAAGAGACGGGCGGTGCTCAAGGA 236
Query 240 TGTGACTAACACTTTGGCAGAAAGTATAATTTCTACAGAAGGCAATGTTAAGGCTTGCAA 299
|||||||||||||||||||||| | | |||||||| || |||||||||| ||
Sbjct 237 TGTGACTAACACTTTGGCAGAACG---------TGCAGAAGGCGATATTAAGGCTTGTAA 287
Query 300 GCGA-GGTGGTAAAGAAACTAAGCAAATAGAAGAAGATGGTTTGGTAGATGTGGATGGCG 358
|| | ||| ||||| |||||||||||| |||||||||||||||||||||||||| ||
Sbjct 288 GC-ATGGTCAAAAAGAGACTAAGCAAATATCAGAAGATGGTTTGGTAGATGTGGATGCCG 346
Query 359 AAAAATCTAAACTAGCAGAAGATTTGTCAAAGATTAGAATGGTTGAATCTTTAGATGCAT 418
||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 347 AAAAATCGAAATTAGCAGAAGATTTATCAAAGATTAGAATGGTTGAATCTTTAGATGCCT 406
Query 419 CTGCTTCAAAGCAAAAAGAAGACAGATCTGATGTCACAGATTGTGTTCAGATTGTAGATA 478
||||| |||||||||||||||| |||| |||||| | |||||| |||||||||||||||
Sbjct 407 CTGCTCCAAAGCAAAAAGAAGATGGATCGGATGTCGCGGATTGTCTTCAGATTGTAGATA 466
Query 479 TAGATT-CAGGTGTCCAAGATCCTCAGTTTTGTAGCTTATATGCTGCAAGTATATATGAC 537
|||||| || |||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 467 TAGATTCCA-ATGTCCAAGATCCCCAGTTTTGTAGCTTGTATGCTGCAAGTATATATGAT 525
Query 538 AGCATTAATGTTGCAGAGCTTGAACAAAGACCTTCAACTAGCTATATGGTGCAAGTGCAG 597
|| | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 526 AGGAGTCATGTTGCAGAGCTTGAACAAAGACCTTCAACTAGTTATATGGTGCAAGTGCAG 585
Query 598 CGAGATATCGATCC-AACGATGCGCGGAATTCTGATTGATTGGCTCGTGGAGGTCTCTGA 656
|||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 586 CGAGATATCGATCCAAAC-ATGCGCGGAATTCTGATTGATTGGCTTGTGGAGGTTTCTGA 644
Query 657 AGAGTACAAGTTGGTTTCAGATACACTTTACCTTACCGTGAATCTAATTGATCGGTTCAT 716
|||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 645 AGAGTACAAGCTGACTTCAGATACACTTTACCTTACCGTGAATCTAATTGATCGATTCAT 704
Query 717 GTCTCATAATTACATTGAAAAGCAGAAGCTCCAGCTACTTGGTATCACTTGCATGTTAAT 776
|||||||||||||||||||||||||| ||| |||||||| ||| ||||||| ||| ||||
Sbjct 705 GTCTCATAATTACATTGAAAAGCAGAGGCTTCAGCTACTAGGTGTCACTTGTATGCTAAT 764
Query 777 AGCCTCCAAATACGAAGAGATTAGTGCACCGCGGTTGGAGGAGTTTTGCTTCATTACAGA 836
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 765 AGCCTCAAAATACGAAGAGATTTGTGCACCGCGGTTGGAGGAGTTTTGCTTCATTACAGA 824
Query 837 CAATACATACACAAGACTAGAAGTACTAAGTATGGAGATTAAAGTTTTAAACTCTCTTCA 896
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||
Sbjct 825 CAATACATACACAAGACTAGAAGTACTAAGTATGGAGATTCAAGTTTTAAACTTTCTACA 884
Query 897 TTTTCGGTTATCAGTTCCCACCACCAAAACGTTTCTCAGGCGGTTCATTCGCGCCGCTCA 956
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 885 TTTTCGGTTATCAGTTCCCACCACCAAAACGTTTCTCAGGCGGTTCATTCACGCAGCTCA 944
Query 957 AGCGTCTGATAAGGTTCCTCTCATTGAAATGGAGTACTTAGCCAACTATTTCGCGGAACT 1016
|||||||||||||||||| || ||||| ||||||| |||||| |||||||||||||||||
Sbjct 945 AGCGTCTGATAAGGTTCCCCTTATTGAGATGGAGTTCTTAGCAAACTATTTCGCGGAACT 1004
Query 1017 AACTCTCACAGAATATACTTTCCTAAGGTTCCTTCCATCCCTAATTGCCGCTTCAGCGGT 1076
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1005 AACTCTCACAGAATATACTTTCCTAAGGTTCCTACCATCCCTAATTGCCGCTTCAGCGGT 1064
Query 1077 TTTCTTAGCAAGATGGACACTCGACCAATCTAACCATCCTTGGAACCAAACTCTACAACA 1136
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1065 TTTCTTAGCAAGATGGACACTCGACCAATCTAACCATCCTTGGAACCCAACTCTACAGCA 1124
Query 1137 CTATACAAGATATGAAACATCCGCTCTAAAAAACACGGTACTTGCAATGGAGGAGTTGCA 1196
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1125 CTATACCAGATATAAAACATCCGCTCTAAAAAACACGGTACTTGCAATGGAGGATTTGCA 1184
Query 1197 GCTCAACACCAGTGGAAGCACTCTTATCGCTATAC-ACACCAAATACAACCAACAAAAGT 1255
|||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||
Sbjct 1185 ACTCAACACCAGTGGAAGCACCCTTATCGCTATACGA-ACCAAATACAACCAACAAAAGT 1243
Query 1256 TTAAAAGAGTGGCAACATTAACATCTCCTGAACGTGTGAACA-CACTCTTCTCAAGATGA 1314
||||||||||||||||| ||||||||||||||||||| | || |||||||||||||||||
Sbjct 1244 TTAAAAGAGTGGCAACACTAACATCTCCTGAACGTGTCA-CAACACTCTTCTCAAGATGA 1302
> Ahg906129 jgi|Araly1|906129|Al_scaffold_0003_3257
Length=177
Score = 76.8 bits (41), Expect = 4e-13
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 910 GTTCCCACCACCAAAACGTTTCTCAGGCGGTTCATTCGCGCCGCTCAAGCGTCTGATAAG 969
||||||||||||||||||||||||||||| ||||||| || || ||||||||| | |||
Sbjct 87 GTTCCCACCACCAAAACGTTTCTCAGGCGATTCATTCAAGCAGCACAAGCGTCTCACAAG 146
Query 970 GT 971
||
Sbjct 147 GT 148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49140440013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5