BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25380.1 Length=1314 Score E Sequences producing significant alignments: (Bits) Value Ahg489392 jgi|Araly1|489392|fgenesh2_kg.6__2526__AT5G25380.1 1784 0.0 Ahg906129 jgi|Araly1|906129|Al_scaffold_0003_3257 76.8 4e-13 > Ahg489392 jgi|Araly1|489392|fgenesh2_kg.6__2526__AT5G25380.1 Length=1302 Score = 1784 bits (966), Expect = 0.0 Identities = 1206/1320 (91%), Gaps = 24/1320 (2%) Strand=Plus/Plus Query 1 ATGCATAGAGCTTCTTCTAAGCACACTAATGCGAAGAAAGAAGCAATCTCTACTTCGAAA 60 ||| |||||| |||||| |||||| ||||||| | ||| ||||||||||||||| ||||| Sbjct 1 ATGTATAGAGTTTCTTCAAAGCACCCTAATGCCACGAAGGAAGCAATCTCTACTACGAAA 60 Query 61 ATTCGAGATAATAATGTGAGAGTCACTAGATCAAGAGCTAAGGCCTTAGGAGTGTCGAAT 120 ||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| ||| Sbjct 61 ATTCGAGATAATAATGTGAGAATCACTAGATCAAAAGCTAAAGCCTTAGGAGTGTC-AAT 119 Query 121 -TCTCCATCAAAACCCGCTTTTAAACATGAAACGAAGCGTGTTGCTAGACCGAGTAATAA 179 ||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||| || Sbjct 120 GTCTCCCTCAAAACCCGCTTTTAAACAGGAACCAAAGCGTGTTGCTAGACCGAGTAACAA 179 Query 180 ACGAATGGCATCGGATAATATCACAGTTTGTAATCAGAAAAGACGAGCGGTGCTCAAGGA 239 |||||||||||||||| | | || | | ||| || || ||||| |||||||||||||| Sbjct 180 ACGAATGGCATCGGAT-GT-T-ACTGCCTATAAGCATAAGAGACGGGCGGTGCTCAAGGA 236 Query 240 TGTGACTAACACTTTGGCAGAAAGTATAATTTCTACAGAAGGCAATGTTAAGGCTTGCAA 299 |||||||||||||||||||||| | | |||||||| || |||||||||| || Sbjct 237 TGTGACTAACACTTTGGCAGAACG---------TGCAGAAGGCGATATTAAGGCTTGTAA 287 Query 300 GCGA-GGTGGTAAAGAAACTAAGCAAATAGAAGAAGATGGTTTGGTAGATGTGGATGGCG 358 || | ||| ||||| |||||||||||| |||||||||||||||||||||||||| || Sbjct 288 GC-ATGGTCAAAAAGAGACTAAGCAAATATCAGAAGATGGTTTGGTAGATGTGGATGCCG 346 Query 359 AAAAATCTAAACTAGCAGAAGATTTGTCAAAGATTAGAATGGTTGAATCTTTAGATGCAT 418 ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 347 AAAAATCGAAATTAGCAGAAGATTTATCAAAGATTAGAATGGTTGAATCTTTAGATGCCT 406 Query 419 CTGCTTCAAAGCAAAAAGAAGACAGATCTGATGTCACAGATTGTGTTCAGATTGTAGATA 478 ||||| |||||||||||||||| |||| |||||| | |||||| ||||||||||||||| Sbjct 407 CTGCTCCAAAGCAAAAAGAAGATGGATCGGATGTCGCGGATTGTCTTCAGATTGTAGATA 466 Query 479 TAGATT-CAGGTGTCCAAGATCCTCAGTTTTGTAGCTTATATGCTGCAAGTATATATGAC 537 |||||| || |||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 467 TAGATTCCA-ATGTCCAAGATCCCCAGTTTTGTAGCTTGTATGCTGCAAGTATATATGAT 525 Query 538 AGCATTAATGTTGCAGAGCTTGAACAAAGACCTTCAACTAGCTATATGGTGCAAGTGCAG 597 || | | |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 526 AGGAGTCATGTTGCAGAGCTTGAACAAAGACCTTCAACTAGTTATATGGTGCAAGTGCAG 585 Query 598 CGAGATATCGATCC-AACGATGCGCGGAATTCTGATTGATTGGCTCGTGGAGGTCTCTGA 656 |||||||||||||| ||| |||||||||||||||||||||||||| |||||||| ||||| Sbjct 586 CGAGATATCGATCCAAAC-ATGCGCGGAATTCTGATTGATTGGCTTGTGGAGGTTTCTGA 644 Query 657 AGAGTACAAGTTGGTTTCAGATACACTTTACCTTACCGTGAATCTAATTGATCGGTTCAT 716 |||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 645 AGAGTACAAGCTGACTTCAGATACACTTTACCTTACCGTGAATCTAATTGATCGATTCAT 704 Query 717 GTCTCATAATTACATTGAAAAGCAGAAGCTCCAGCTACTTGGTATCACTTGCATGTTAAT 776 |||||||||||||||||||||||||| ||| |||||||| ||| ||||||| ||| |||| Sbjct 705 GTCTCATAATTACATTGAAAAGCAGAGGCTTCAGCTACTAGGTGTCACTTGTATGCTAAT 764 Query 777 AGCCTCCAAATACGAAGAGATTAGTGCACCGCGGTTGGAGGAGTTTTGCTTCATTACAGA 836 |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 765 AGCCTCAAAATACGAAGAGATTTGTGCACCGCGGTTGGAGGAGTTTTGCTTCATTACAGA 824 Query 837 CAATACATACACAAGACTAGAAGTACTAAGTATGGAGATTAAAGTTTTAAACTCTCTTCA 896 |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || Sbjct 825 CAATACATACACAAGACTAGAAGTACTAAGTATGGAGATTCAAGTTTTAAACTTTCTACA 884 Query 897 TTTTCGGTTATCAGTTCCCACCACCAAAACGTTTCTCAGGCGGTTCATTCGCGCCGCTCA 956 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 885 TTTTCGGTTATCAGTTCCCACCACCAAAACGTTTCTCAGGCGGTTCATTCACGCAGCTCA 944 Query 957 AGCGTCTGATAAGGTTCCTCTCATTGAAATGGAGTACTTAGCCAACTATTTCGCGGAACT 1016 |||||||||||||||||| || ||||| ||||||| |||||| ||||||||||||||||| Sbjct 945 AGCGTCTGATAAGGTTCCCCTTATTGAGATGGAGTTCTTAGCAAACTATTTCGCGGAACT 1004 Query 1017 AACTCTCACAGAATATACTTTCCTAAGGTTCCTTCCATCCCTAATTGCCGCTTCAGCGGT 1076 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1005 AACTCTCACAGAATATACTTTCCTAAGGTTCCTACCATCCCTAATTGCCGCTTCAGCGGT 1064 Query 1077 TTTCTTAGCAAGATGGACACTCGACCAATCTAACCATCCTTGGAACCAAACTCTACAACA 1136 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 1065 TTTCTTAGCAAGATGGACACTCGACCAATCTAACCATCCTTGGAACCCAACTCTACAGCA 1124 Query 1137 CTATACAAGATATGAAACATCCGCTCTAAAAAACACGGTACTTGCAATGGAGGAGTTGCA 1196 |||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1125 CTATACCAGATATAAAACATCCGCTCTAAAAAACACGGTACTTGCAATGGAGGATTTGCA 1184 Query 1197 GCTCAACACCAGTGGAAGCACTCTTATCGCTATAC-ACACCAAATACAACCAACAAAAGT 1255 |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||| Sbjct 1185 ACTCAACACCAGTGGAAGCACCCTTATCGCTATACGA-ACCAAATACAACCAACAAAAGT 1243 Query 1256 TTAAAAGAGTGGCAACATTAACATCTCCTGAACGTGTGAACA-CACTCTTCTCAAGATGA 1314 ||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||| Sbjct 1244 TTAAAAGAGTGGCAACACTAACATCTCCTGAACGTGTCA-CAACACTCTTCTCAAGATGA 1302 > Ahg906129 jgi|Araly1|906129|Al_scaffold_0003_3257 Length=177 Score = 76.8 bits (41), Expect = 4e-13 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 910 GTTCCCACCACCAAAACGTTTCTCAGGCGGTTCATTCGCGCCGCTCAAGCGTCTGATAAG 969 ||||||||||||||||||||||||||||| ||||||| || || ||||||||| | ||| Sbjct 87 GTTCCCACCACCAAAACGTTTCTCAGGCGATTCATTCAAGCAGCACAAGCGTCTCACAAG 146 Query 970 GT 971 || Sbjct 147 GT 148 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49140440013 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5