BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25415.1
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351553 jgi|Araly1|351553|fgenesh1_pg.C_scaffold_6002146 1105 0.0
Ahg942110 jgi|Araly1|942110|scaffold_602654.1 438 3e-122
> Ahg351553 jgi|Araly1|351553|fgenesh1_pg.C_scaffold_6002146
Length=849
Score = 1105 bits (598), Expect = 0.0
Identities = 742/808 (92%), Gaps = 24/808 (3%)
Strand=Plus/Plus
Query 175 CCCTAGTTCGTTCTGATC--AA-ACGTTGCCTCTCAGATCCTTCAAGTTAAGTGAAAATG 231
||||||||||||| |||| || |||||||||||||||||||||||| ||||||||||||
Sbjct 62 CCCTAGTTCGTTCAGATCAAAATACGTTGCCTCTCAGATCCTTCAAGATAAGTGAAAATG 121
Query 232 CTACATACGATTGTCTAGATATTTTTAAGCAACCAGGACTTAATCATCCCTCGCTTCAAA 291
||| |||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 122 CTAAATACGATTGTGTAGATATTTTTAAGCAACCAGGACTTAATCATCCCTTGCTCCAAA 181
Query 292 ACCACACAATCCAGATTGCTGGAGTAAGGTCACGTGCTGGTCCATATCATGGTGTAGAAG 351
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 182 ACCACACAATCCAGATTGCTGGAGTAAGGTCACGTGCTGGTCCATTTCATGGTGTAGAAG 241
Query 352 CTTGGTTTAATGGATATAAGCTAAACGTTGGACGATACCAGATTTCATATACCCAAATAT 411
|||||| | |||||||| |||||||||||||||||| ||||||||||||| ||||||||
Sbjct 242 CTTGGTATGATGGATATGCGCTAAACGTTGGACGATATCAGATTTCATATAGCCAAATAT 301
Query 412 TTATAGGCAGTCGACTGAATAACCAAGACAATTTTATCCAAGCGGGTTATATTATTAATC 471
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 302 TTATAGGCAGTCGATTGAATAACCAAAACAATTTTATCCAAGCGGGTTATATTATAAATC 361
Query 472 CAGGTTTCTTTGGCACCGGACAACTTTGGACGTATGGATTTTGGAAGGGTAAAGATGGAA 531
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 362 CAGGTTTCTTTCGCACCGGACAACTTTGGACGTATGCATTTTGGAAGGGTAAAGATGGAA 421
Query 532 AAGGATGTTACAATACAGCATGTGATGGGTTTATTCAGGTTTCGAGAAAAATTCCCATAG 591
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 422 AAGGATGTTACAATACAGCATTTGATGGGTTTATTCAGGTTTCGAGAAAAATTCCCATAG 481
Query 592 TCCAACCCATAGACCTTAAGCCAGGAGTCCCTGACTGGTCGCGTTGGTCCATCCATCAGG 651
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 482 TCCAACCCATAGACCTTAAGCCAGGAGTCCCTGATTGGTCGCGTTGGTCCATCCATCAG- 540
Query 652 ATAAAGGAACTGGAAATTGGTGGCTTACACAAATCTTACAAAATGCACCTAACGAAGATA 711
| || | | |||||||||| ||| | | | || || ||||||||||||||
Sbjct 541 A-AA------T-----T-GGTGGCTTACTCAA-TAT--CGAA-TGGACCTAACGAAGATA 583
Query 712 TTGGATATTGGCCAAAAGAGTTATTTAATCTTATTAATAATGGTGCTACTACGGTTGGAG 771
||||||||||| |||||||| | |||||||||||| | ||||||||||||||||||||||
Sbjct 584 TTGGATATTGGTCAAAAGAGCTCTTTAATCTTATTGACAATGGTGCTACTACGGTTGGAG 643
Query 772 TTGGAGGTGCAGTACAAGCTTCTGGTTCAGGTTCAAGTCCCCCGATGGGTAATGGTAATT 831
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 644 TTGGGGGTGCAGTACAAGCTTCTGGTTCAGGTGAAAGTCCCCCGATGGGTAATGGTAATT 703
Query 832 TTCCAGTTGGAGGCCGCGCAGATTCAGCAATATTTACAAATATTGAAGTTTTGGATTCCA 891
||||||| ||||||||| ||| |||||| | |||||||||||||||||||||||||||
Sbjct 704 TTCCAGTGGGAGGCCGCTTAGACTCAGCATTGGTTACAAATATTGAAGTTTTGGATTCCA 763
Query 892 ACTATAACCAA-CGTAAAATGAATTCTTTTCCTACTGAAATTATGGTAGATAGTCCAAAA 950
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 764 ACTATAAC-AATCGTAAAATGAATTCTTTTCCTACTGAGATTATGGTAGATAGTCCAAAA 822
Query 951 TGCTATGGGTTAAGAATTGGTAAGGTGA 978
|| |||||| ||||| ||||||||||||
Sbjct 823 TGTTATGGGGTAAGA-TTGGTAAGGTGA 849
> Ahg942110 jgi|Araly1|942110|scaffold_602654.1
Length=404
Score = 438 bits (237), Expect = 3e-122
Identities = 279/300 (93%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 220 TAAGTGAAAATGCTACATACGATTGTCTAGATATTTTTAAGCAACCAGGACTTAATCATC 279
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 73 TAAGTGAAAATGCTACATACGATTGTGTAGATATTTTTAAGCAACCAGGACTTAATCATC 132
Query 280 CCTCGCTTCAAAACCACACAATCCAGATTGCTGGAGTAAGGTCACGTGCTGGTCCATATC 339
||| ||| |||||| |||||||||||||||||||||||||||||| |||||||||| |
Sbjct 133 CCTTGCTCCAAAACAACACAATCCAGATTGCTGGAGTAAGGTCACAAGCTGGTCCATTTT 192
Query 340 ATGGTGTAGAAGCTTGGTTTAATGGATATAAGCTAAACGTTGGACGATACCAGATTTCAT 399
|||||||||||||||||| | |||||| | |||||||||||||||||| ||||||||||
Sbjct 193 ATGGTGTAGAAGCTTGGTATGATGGATTTGCGCTAAACGTTGGACGATATCAGATTTCAT 252
Query 400 ATACCCAAATATTTATAGGCAGTCGACTGAATAACCAAGACAATTTTATCCAAGCGGGTT 459
||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 253 ATAGCCAAATATTTATAGGCAGTCTATTGAATAACCAAGAAAATTTTATCCAAGCGGGTT 312
Query 460 ATATTATTAATCCAGGTTTCTTTGGCACCGGACAACTTTGGACGTATGGATTTTGGAAGG 519
||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 313 ATATTATAAATCCAGGTTTCTTTCGCACCGGACAACTTTGGACGTATGCATTTTGGAAGG 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41668348281
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5