BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25415.1 Length=1118 Score E Sequences producing significant alignments: (Bits) Value Ahg351553 jgi|Araly1|351553|fgenesh1_pg.C_scaffold_6002146 1105 0.0 Ahg942110 jgi|Araly1|942110|scaffold_602654.1 438 3e-122 > Ahg351553 jgi|Araly1|351553|fgenesh1_pg.C_scaffold_6002146 Length=849 Score = 1105 bits (598), Expect = 0.0 Identities = 742/808 (92%), Gaps = 24/808 (3%) Strand=Plus/Plus Query 175 CCCTAGTTCGTTCTGATC--AA-ACGTTGCCTCTCAGATCCTTCAAGTTAAGTGAAAATG 231 ||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||| Sbjct 62 CCCTAGTTCGTTCAGATCAAAATACGTTGCCTCTCAGATCCTTCAAGATAAGTGAAAATG 121 Query 232 CTACATACGATTGTCTAGATATTTTTAAGCAACCAGGACTTAATCATCCCTCGCTTCAAA 291 ||| |||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 122 CTAAATACGATTGTGTAGATATTTTTAAGCAACCAGGACTTAATCATCCCTTGCTCCAAA 181 Query 292 ACCACACAATCCAGATTGCTGGAGTAAGGTCACGTGCTGGTCCATATCATGGTGTAGAAG 351 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 182 ACCACACAATCCAGATTGCTGGAGTAAGGTCACGTGCTGGTCCATTTCATGGTGTAGAAG 241 Query 352 CTTGGTTTAATGGATATAAGCTAAACGTTGGACGATACCAGATTTCATATACCCAAATAT 411 |||||| | |||||||| |||||||||||||||||| ||||||||||||| |||||||| Sbjct 242 CTTGGTATGATGGATATGCGCTAAACGTTGGACGATATCAGATTTCATATAGCCAAATAT 301 Query 412 TTATAGGCAGTCGACTGAATAACCAAGACAATTTTATCCAAGCGGGTTATATTATTAATC 471 |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 302 TTATAGGCAGTCGATTGAATAACCAAAACAATTTTATCCAAGCGGGTTATATTATAAATC 361 Query 472 CAGGTTTCTTTGGCACCGGACAACTTTGGACGTATGGATTTTGGAAGGGTAAAGATGGAA 531 ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 362 CAGGTTTCTTTCGCACCGGACAACTTTGGACGTATGCATTTTGGAAGGGTAAAGATGGAA 421 Query 532 AAGGATGTTACAATACAGCATGTGATGGGTTTATTCAGGTTTCGAGAAAAATTCCCATAG 591 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 422 AAGGATGTTACAATACAGCATTTGATGGGTTTATTCAGGTTTCGAGAAAAATTCCCATAG 481 Query 592 TCCAACCCATAGACCTTAAGCCAGGAGTCCCTGACTGGTCGCGTTGGTCCATCCATCAGG 651 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 482 TCCAACCCATAGACCTTAAGCCAGGAGTCCCTGATTGGTCGCGTTGGTCCATCCATCAG- 540 Query 652 ATAAAGGAACTGGAAATTGGTGGCTTACACAAATCTTACAAAATGCACCTAACGAAGATA 711 | || | | |||||||||| ||| | | | || || |||||||||||||| Sbjct 541 A-AA------T-----T-GGTGGCTTACTCAA-TAT--CGAA-TGGACCTAACGAAGATA 583 Query 712 TTGGATATTGGCCAAAAGAGTTATTTAATCTTATTAATAATGGTGCTACTACGGTTGGAG 771 ||||||||||| |||||||| | |||||||||||| | |||||||||||||||||||||| Sbjct 584 TTGGATATTGGTCAAAAGAGCTCTTTAATCTTATTGACAATGGTGCTACTACGGTTGGAG 643 Query 772 TTGGAGGTGCAGTACAAGCTTCTGGTTCAGGTTCAAGTCCCCCGATGGGTAATGGTAATT 831 |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 644 TTGGGGGTGCAGTACAAGCTTCTGGTTCAGGTGAAAGTCCCCCGATGGGTAATGGTAATT 703 Query 832 TTCCAGTTGGAGGCCGCGCAGATTCAGCAATATTTACAAATATTGAAGTTTTGGATTCCA 891 ||||||| ||||||||| ||| |||||| | ||||||||||||||||||||||||||| Sbjct 704 TTCCAGTGGGAGGCCGCTTAGACTCAGCATTGGTTACAAATATTGAAGTTTTGGATTCCA 763 Query 892 ACTATAACCAA-CGTAAAATGAATTCTTTTCCTACTGAAATTATGGTAGATAGTCCAAAA 950 |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 764 ACTATAAC-AATCGTAAAATGAATTCTTTTCCTACTGAGATTATGGTAGATAGTCCAAAA 822 Query 951 TGCTATGGGTTAAGAATTGGTAAGGTGA 978 || |||||| ||||| |||||||||||| Sbjct 823 TGTTATGGGGTAAGA-TTGGTAAGGTGA 849 > Ahg942110 jgi|Araly1|942110|scaffold_602654.1 Length=404 Score = 438 bits (237), Expect = 3e-122 Identities = 279/300 (93%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 220 TAAGTGAAAATGCTACATACGATTGTCTAGATATTTTTAAGCAACCAGGACTTAATCATC 279 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 73 TAAGTGAAAATGCTACATACGATTGTGTAGATATTTTTAAGCAACCAGGACTTAATCATC 132 Query 280 CCTCGCTTCAAAACCACACAATCCAGATTGCTGGAGTAAGGTCACGTGCTGGTCCATATC 339 ||| ||| |||||| |||||||||||||||||||||||||||||| |||||||||| | Sbjct 133 CCTTGCTCCAAAACAACACAATCCAGATTGCTGGAGTAAGGTCACAAGCTGGTCCATTTT 192 Query 340 ATGGTGTAGAAGCTTGGTTTAATGGATATAAGCTAAACGTTGGACGATACCAGATTTCAT 399 |||||||||||||||||| | |||||| | |||||||||||||||||| |||||||||| Sbjct 193 ATGGTGTAGAAGCTTGGTATGATGGATTTGCGCTAAACGTTGGACGATATCAGATTTCAT 252 Query 400 ATACCCAAATATTTATAGGCAGTCGACTGAATAACCAAGACAATTTTATCCAAGCGGGTT 459 ||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| Sbjct 253 ATAGCCAAATATTTATAGGCAGTCTATTGAATAACCAAGAAAATTTTATCCAAGCGGGTT 312 Query 460 ATATTATTAATCCAGGTTTCTTTGGCACCGGACAACTTTGGACGTATGGATTTTGGAAGG 519 ||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 313 ATATTATAAATCCAGGTTTCTTTCGCACCGGACAACTTTGGACGTATGCATTTTGGAAGG 372 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41668348281 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5