BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G25425.1

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg326811 jgi|Araly1|326811|fgenesh1_pm.C_scaffold_6002031           377    2e-104


> Ahg326811 jgi|Araly1|326811|fgenesh1_pm.C_scaffold_6002031
Length=336

 Score =  377 bits (204),  Expect = 2e-104
 Identities = 301/346 (87%), Gaps = 14/346 (4%)
 Strand=Plus/Plus

Query  1    ATGGCTTCCGTTGACACCAACCATGTTTCCACCATATCCAAGCCAGAAGGTGTTATTGGC  60
            ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCCTCCGTTGACACCAGCCATGTTTCCACCATATCCAAGCCAGAAGGTGTTATTGGC  60

Query  61   TATGGTG-GAAAGACGCCAAAATTAGCAGTCTTTATCC-AAAAGGGCAGTGGCGGTAGGG  118
            || |||| ||| |||| | ||||||||||||||||||| |||||| | ||||||||| ||
Sbjct  61   TACGGTGAGAA-GACGTCGAAATTAGCAGTCTTTATCCGAAAAGG-CGGTGGCGGTAAGG  118

Query  119  GAGGAGGCGGACGTGGTGGCGGTAAGGGAAGAGGAGGACGCGGTGGCAGATACGACCGTC  178
            ||||||| ||||||||||||||||||  | |||||||||| |||||| ||||||| ||||
Sbjct  119  GAGGAGGAGGACGTGGTGGCGGTAAGTTAGGAGGAGGACGTGGTGGCGGATACGATCGTC  178

Query  179  TAAAGCAATCTCGCGGTGGTCTAGGCGGGTTTCCATATTTTTATGGTATGTCGCACCACC  238
            ||| ||||||||||||||| |||||||||| ||| | |||||  ||||||||||||||||
Sbjct  179  TAAGGCAATCTCGCGGTGGGCTAGGCGGGTATCCGTTTTTTTCGGGTATGTCGCACCACC  238

Query  239  ACGCTAATCGGTCAAGCAGTAGCCGGAATCTTGGAAGGTCAGGGTGTGGTTTCGGTTGGT  298
            |   |   || |||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct  239  A---T---CGTTCAAGCGGTAGCCGGAATCTTGGAAGGCCAAGGTGTGGTTTCGGTTGGT  292

Query  299  TAGGTTTATTACCGGCTTTGGTAGTG-TTGATT-TTGGTTTCATAG  342
            ||| |||| || |||||| ||| | | || ||| |||||||| |||
Sbjct  293  TAGCTTTAGTATCGGCTTAGGTCG-GATT-ATTGTTGGTTTCGTAG  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12133477302


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5