BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25425.1 Length=342 Score E Sequences producing significant alignments: (Bits) Value Ahg326811 jgi|Araly1|326811|fgenesh1_pm.C_scaffold_6002031 377 2e-104 > Ahg326811 jgi|Araly1|326811|fgenesh1_pm.C_scaffold_6002031 Length=336 Score = 377 bits (204), Expect = 2e-104 Identities = 301/346 (87%), Gaps = 14/346 (4%) Strand=Plus/Plus Query 1 ATGGCTTCCGTTGACACCAACCATGTTTCCACCATATCCAAGCCAGAAGGTGTTATTGGC 60 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCCTCCGTTGACACCAGCCATGTTTCCACCATATCCAAGCCAGAAGGTGTTATTGGC 60 Query 61 TATGGTG-GAAAGACGCCAAAATTAGCAGTCTTTATCC-AAAAGGGCAGTGGCGGTAGGG 118 || |||| ||| |||| | ||||||||||||||||||| |||||| | ||||||||| || Sbjct 61 TACGGTGAGAA-GACGTCGAAATTAGCAGTCTTTATCCGAAAAGG-CGGTGGCGGTAAGG 118 Query 119 GAGGAGGCGGACGTGGTGGCGGTAAGGGAAGAGGAGGACGCGGTGGCAGATACGACCGTC 178 ||||||| |||||||||||||||||| | |||||||||| |||||| ||||||| |||| Sbjct 119 GAGGAGGAGGACGTGGTGGCGGTAAGTTAGGAGGAGGACGTGGTGGCGGATACGATCGTC 178 Query 179 TAAAGCAATCTCGCGGTGGTCTAGGCGGGTTTCCATATTTTTATGGTATGTCGCACCACC 238 ||| ||||||||||||||| |||||||||| ||| | ||||| |||||||||||||||| Sbjct 179 TAAGGCAATCTCGCGGTGGGCTAGGCGGGTATCCGTTTTTTTCGGGTATGTCGCACCACC 238 Query 239 ACGCTAATCGGTCAAGCAGTAGCCGGAATCTTGGAAGGTCAGGGTGTGGTTTCGGTTGGT 298 | | || |||||| |||||||||||||||||||| || |||||||||||||||||| Sbjct 239 A---T---CGTTCAAGCGGTAGCCGGAATCTTGGAAGGCCAAGGTGTGGTTTCGGTTGGT 292 Query 299 TAGGTTTATTACCGGCTTTGGTAGTG-TTGATT-TTGGTTTCATAG 342 ||| |||| || |||||| ||| | | || ||| |||||||| ||| Sbjct 293 TAGCTTTAGTATCGGCTTAGGTCG-GATT-ATTGTTGGTTTCGTAG 336 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12133477302 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5