BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25430.1
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326812 jgi|Araly1|326812|fgenesh1_pm.C_scaffold_6002032 2950 0.0
> Ahg326812 jgi|Araly1|326812|fgenesh1_pm.C_scaffold_6002032
Length=1929
Score = 2950 bits (1597), Expect = 0.0
Identities = 1751/1826 (96%), Gaps = 7/1826 (0%)
Strand=Plus/Plus
Query 196 GGAGCTCTAAGTGCAGTGGAAACATTAGCTTCTACTTCGATATGCGGAATCATCCATGCG 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 GGAGCTCTAAGTGCAGTGGAAACATTAGCTTCTACTTCGATATGCGGAATCATCCATGCG 165
Query 256 ATTTTCGGTGGACAACCATTGTTGATAGTTGGAGTTGCAGAGCCAACCATCATTATGTAT 315
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 166 ATTTTTGGTGGACAACCATTGTTGATACTTGGGGTTGCAGAGCCAACCATCATTATGTAT 225
Query 316 ACTTATCTTTACAGTTTCTGCATTAGTAGACCGGATATCGGTCGAGAACTTTACCTAGCT 375
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 ACTTATCTTTATAGTTTCTGCATTAGTAGACCGGATATCGGTCGAGAACTTTACCTAGCT 285
Query 376 TGGGTTGCATGGGTTTGTGTATGGACTTCAGTTTTGCTTATCCTTCTTTCGATATTTAAC 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 TGGGTTGCATGGGTTTGTGTATGGACTTCAGTTTTGCTTATCCTTCTTTCGATATTTAAC 345
Query 436 GCGGGCACAATCATCACGAGGTTTACGAGAATCGCTGGGGAACTTTTTGGCATGTTGATT 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GCGGGCACAATCATCACGAGGTTTACGAGAATCGCTGGGGAACTTTTTGGCATGTTGATT 405
Query 496 GCTGTTCTGTTTTTACAAGAAGCTATAAAGGGATTGATCAGTGAGTTTCACGCCCCCGAG 555
|||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||
Sbjct 406 GCTGTTCTGTTTTTACAAGAAGCTATCAAGGGATTGATCAGCGAGTTTAACGCCCCCGAA 465
Query 556 ATTAAAAATCAAGAAACAGGGAAATCTCATTTCCTCTTGATT-TATGCAAATGGTTTGCT 614
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 466 ATTAAAAATCAAGAAACAGGGAAATCTCATTTCCTCTTG-TTGTATGCAAATGGGTTGCT 524
Query 615 TGCGGTAATTTTCTCGCTAGGCCTTCTAATCACCGCGCTAAAGAGTAGGAGAGCAAAATC 674
||||||||||||||| |||||||| || ||||||||||||||||||| |||||||||||
Sbjct 525 CGCGGTAATTTTCTCGTTAGGCCTTGTATTCACCGCGCTAAAGAGTAGAAGAGCAAAATC 584
Query 675 TTGGAAATATGGTTTTGGGTGGCTTCGAAGTTTCATTGGAGATTACGGTGTTCCTTTAAT 734
||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 585 TTGGAAATACGGCTTTGGATGGCTTCGGAGTTTCATTGGAGATTACGGTGTTCCTTTAAT 644
Query 735 GGTCTTGTTATGGACGGCATTGTCTTACACAGTTCCTAGTGAAGTCCTTCCAAGTGTTCC 794
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 645 GGTCTTGTTATGGACGGCATTGTCTTACACAATTCCTAGTGAAGTACTTCCAAGTGTTCC 704
Query 795 CCGGAGACTGTTTTGTCCTCTTCCATGGGAGCCAGCTTCATTGTATCATTGGACTGTAGT 854
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 705 TCGGAGACTGTTCTGTCCTCTTCCATGGGAGCCAGCTTCATTGTATCATTGGACTGTAAT 764
Query 855 CAAGGACATGGGGAAGGTACCGATAATGTATATCTTAGCTGCGTTTATACCTGGTGTGAT 914
||||||||||| ||||||||| |||||||||| || |||||||||||||| ||||||||
Sbjct 765 AAAGGACATGGGTAAGGTACCGGTAATGTATATATTTGCTGCGTTTATACCCGGTGTGAT 824
Query 915 GATAGCAGGACTTTACTTCTTCGACCATAGTGTAGCTTCACAAATGGCACAACAGAAAGA 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GATAGCAGGACTTTACTTCTTCGACCATAGTGTAGCTTCACAAATGGCACAACAGAAAGA 884
Query 975 GTTTAATCTAAAGAATCCTTCTGCTTATCACTATGACATCTTCTTGCTTGGAATTATTAC 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 885 GTTTAATCTAAAGAATCCTTCTGCTTATCACTATGACATCTTCTTGCTTGGAATTATGAC 944
Query 1035 TTTGATATGTGGACTACTTGGACTTCCACCTTCAAATGGTGTTCTTCCTCAGGCTCCAAT 1094
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 945 TTTGATATGTGGACTACTTGGACTTCCTCCTTCAAATGGTGTTCTTCCTCAGGCTCCAAT 1004
Query 1095 GCACACAAAGAGTCTTGCGGTTCTCAATCGTCAACTTATACGCAAGAAAATGGTGAAGAA 1154
|||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||
Sbjct 1005 GCACACAAAGAGTCTTGCAGTTCTCAATCGTCAGCTGACACGCAAGAAAATGGTGAAGAA 1064
Query 1155 AGCAAAGGAGTGTATGAAAATGAAAGCAAGCAAATCAGAAATATATGGGAGAATGCAATC 1214
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1065 AGCAAAGGAGTGTATGAAAATGAAAGCTAGCAAATCAGAAATATATGGAAGAATGCAATC 1124
Query 1215 AGTGTTTATAGAGATGGAGACATCCCCACCTCAGGATAATTCTGTAGCAACAGATTTAAA 1274
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1125 AGTGTTTATAGAGATGGAGACATGCCCACCTCAGGATAATTCAGTAGCAACAGATTTAAA 1184
Query 1275 AGAGTTGAAAGAAGTTGTGATGAGACCAGACGAAGGAGGCG-ATACAAAAGGAAAATTCG 1333
|||||||||||||||||| |||||||| ||| |||||| || ||||||||||||||||||
Sbjct 1185 AGAGTTGAAAGAAGTTGTAATGAGACCGGACCAAGGAG-CGGATACAAAAGGAAAATTCG 1243
Query 1334 ATCCCGATGTTCATATAGAGGCTAATTTACCGGTTAGAGTAAACGAGCAAAGAGTGAGCA 1393
|||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1244 ATCCGGATGTGCATATAGAGGCTAACTTGCCGGTTAGAGTAAACGAGCAAAGAGTGAGCA 1303
Query 1394 ATCTTTTGCAATCAGTTCTTGTTGGTTTAACACTTCTTGCAGTGACAGTCATTAAAATGA 1453
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1304 ATCTTTTGCAATCAGTTCTTGTTGGTTTAACACTTCTTGCAGTGCCAGTCATCAAAATGA 1363
Query 1454 TCCCAAGTTCAGTACTTTGGGGTTACTTTGCTTATATGGCGATAGACAGTCTCCCGGGAA 1513
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TCCCAAGTTCAATACTTTGGGGTTACTTTGCTTATATGGCGATAGACAGTCTCCCGGGAA 1423
Query 1514 ACCAATTTTGGGAGAGATTGTTGCTTCTCTTTATTCCTCCTAGCCGGCTTTTCAAAGTCT 1573
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1424 ACCAATTCTGGGAGAGATTGTTGCTTCTCTTTATTCCTCCTAGCCGTCTTTTCAAAGTCT 1483
Query 1574 TGGAAGGAGTGCATGCTTCATTTGTGGAGTTGGTACCATACAGAGTGATTGTAACATTCA 1633
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1484 TGGAAGGAGTACATGCTTCATTTGTGGAGTTAGTACCATACAGAGTGATTGTAACATTCA 1543
Query 1634 CACTTTTCCAGTTGGTTTATTTTCTCTTGTGCTATGGTATGACATGGATTCCTATGGCCG 1693
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1544 CACTTTTCCAGTTGGTTTATTTTCTCTTGTGCTATGGTATGACATGGATTCATATGGCCG 1603
Query 1694 GGATATTTTTCCCCGCACTCTTCTTTCTACTTATAAGTATAAGAGAACACTTGCTTCCCA 1753
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1604 GGATATTTTTCCCGGCGCTCTTCTTTCTACTCATAAGTATAAGAGAACACTTGCTTCCCA 1663
Query 1754 AGTTATTCGATATGCAACACCTTCAAGTGTTAGATGCTTCTGACTATGAAGAAATAGTAG 1813
|||||||| || ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1664 AGTTATTCCATCCCCAACATCTTCAAGTGCTAGATGCTTCTGACTATGAAGAAATAGTAG 1723
Query 1814 CAGCACCTAT-C--CAACACTCAAGTTTCGCATATAGGAAACTAGGGTCTTCTCATCATT 1870
|||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1724 CAGCACCTATACAACAACACTCAAGTTTCGCATACCGGAAACTAGGGTCTTCTCATCATT 1783
Query 1871 TATCAGAAGGTGAAGATGAATTCTACGACGCGGAGATATTGGATGAGATGACTACAAGCA 1930
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1784 TATCAGAAGGTGAAGATGAATTCTACGACGCGGAGATATTGGATGAGCTGACTACAAGCA 1843
Query 1931 GAGGTGAAATAAGGATCCGAACCATAAGTTTTAAAGAGGTGCACCCGGAGCCTGAAGAGA 1990
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1844 GAGGTGAAATAAGGATCCGAACCATAAGTTTTAAAGAGGTGCATCCGGAGCCTGAAGAGA 1903
Query 1991 AGCATGTAACCTTTGAACCACATTAA 2016
||| ||||||||||||||||||||||
Sbjct 1904 AGCGTGTAACCTTTGAACCACATTAA 1929
Score = 171 bits (92), Expect = 3e-41
Identities = 100/104 (96%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAGTGAAGGAGAAAGTGGTCCATTTCAGGGAATTCTTCGAGATATCGAAGGTAGA 60
||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGAGAGTGAAGGAGAAGGAGGTCCATTTCAGGGAATACTTCGAGATATCGAAGGTAGA 60
Query 61 CGAAAATGTTACAAACAAGATTGGATTCGTGGCATAAAAACCGG 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGAAAATGTTACAAACAAGATTGGATTCGTGGCATAAAAACCGG 104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75799587550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5