BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25440.1
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894457 jgi|Araly1|894457|Al_scaffold_0006_2453 1485 0.0
Ahg894459 jgi|Araly1|894459|Al_scaffold_0006_2455 433 2e-120
> Ahg894457 jgi|Araly1|894457|Al_scaffold_0006_2453
Length=942
Score = 1485 bits (804), Expect = 0.0
Identities = 898/944 (95%), Gaps = 4/944 (0%)
Strand=Plus/Plus
Query 37 ATGGGAAATTGTCTCTCAGCTTCGACACTTCCCACCGAACCAAATGCTCCCAAATCAGTG 96
|||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 1 ATGGGAAATTGTCTCTCAGCTTCGACACCTCCCACCCAACCAAATGCTCCCATTTCAGTG 60
Query 97 GAGGAGGGTGTGAAAGTCTTCACGGTGGCAGATCTGAAGAAAGCGACTAATGATTTCGGA 156
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GAGGAGGGTGTGAAAGTCATCACGGTGGCAGAGCTGAAGAAAGCGACTAATGATTTCGGA 120
Query 157 AACCAGATGGAACTAGGAGAGAGCTTGGGATACATCAATCCCAAAACGTTATCTCCGGCC 216
|||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 121 AACCAGATGGAAATAGGAGAGAGCTTGGGATATATCAATCCCAAGACGTTATCTCCGGCC 180
Query 217 AAGAAAGGTGTTGGCATGGCCGTCGCGGTCAAGAAAATTTACTTAGCCAATGAACAAGCT 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGAAAGGTGTTGGCATGGCCGTCGCGGTCAAGAAAATTTACTTAGCCAATGAACAAGCT 240
Query 277 TTTCAAGATTGGCTTGTTGACGTAGAGTTTCTACGACATAACTCTCATCCAAGCTTGGTG 336
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 TTTCAAGATTGGCTTGTTGACGTAGAGTTTCTACGACATAATTCTCATCCAAGCTTGGTG 300
Query 337 AAGCTAATTGGCTACTGTTATGATCGTGATATGTTGTTTATTGTTTCTGAATACTTTCCA 396
|| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAACTCATTGGCTACGGTTATGATCGTGATATGTTGTTTATTGTTTCTGAATACTTTCCA 360
Query 397 AATGGAAGCTTAGGAAGTTACATC-AGTAGAGATAGTCGTCCAAAGTCATTGCCGTGGGA 455
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 361 AATGGAAGCTTAGGAAGTTACATTGA-TAGAGATAGTCGTCCAAAGTCATTGCCGTGGGA 419
Query 456 GACACGACTTAAGATATCCATAGGAGCGGCTCAGTGTCTTGCCTTCTTGCACTCTAGGAA 515
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GACACGACTCAAGATATCCATAGGAGCGGCTCATTGTCTTGCCTTCTTGCACTCTAGGAA 479
Query 516 GCAAGCCGGTCTATACCGCAGATATCTCACTGCTTCGAAAATCCTGCTCGACTCGGACTT 575
||||||||| || ||||||||||| ||||| |||||||||||||||||||| || |||||
Sbjct 480 GCAAGCCGGCCTCTACCGCAGATACCTCACCGCTTCGAAAATCCTGCTCGATTCAGACTT 539
Query 576 CAACGCAAGAGTTTCCTATTTTGGAAAGCCAAAAGTTTCTCTCGATGAATTGGTATACAC 635
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 540 CAACGCAAGAGTTTCCTATTTTGGAAAGCCAAAAGTTTCTCTCGATGAACTGGTACACGC 599
Query 636 CATCGGGTTTTCAAATGTAGCACCTAGATATCAATACCCACCTCCCGAATACATACTCTC 695
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAGAGGGTTTGCAAATGTAGCACCTAGATATCAATACCCACCTCCCGAATACATACTCTC 659
Query 696 AGGGATGTCGAACATGGCGGGCGATGTGTATAGCTTTGGTGTTATACTACTTAAAATGTT 755
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 AGGGATGTCGAACATGGCGGGCGATGTGTACAGCTTTGGTGTTATACTACTTAAAATGTT 719
Query 756 AACTGGTTTAGGAAAAG-ACCTCACAATCTCAGCAAAGCGAGaaataaaaaataaaaaGT 814
||||||||||||||| | |||||| |||||||| ||||||||||||||||||||||| |
Sbjct 720 AACTGGTTTAGGAAA-GCACCTCATAATCTCAGTAAAGCGAGAAATAAAAAATAAAAGGG 778
Query 815 ACAACATTGTGGAGATGATCGATCCAGATTTGAAGAATAGCTATCCACTTGAAGCGGGAA 874
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 ACAACATTGAGGAGATGATCGATCCAGATTTGAAGAATAGCTATCCTCTTGAAGCGGGAA 838
Query 875 GACTTATGTGCGAGCTTATTAAACAATGCCTAGAGGTAGACCCGAAGATGCGACCAACCA 934
||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 839 GACTTCTGTGCGAGCTTATTAAACAATGCCTTGAGGTAGACCCGAAGATACGACCAACCA 898
Query 935 TGCAAGAAGTGCTAGATAATCTGAATGCTATAGCTCAGATTTGA 978
||||| |||||||||||||||||||||||||||| | | |||||
Sbjct 899 TGCAACAAGTGCTAGATAATCTGAATGCTATAGCCCTGTTTTGA 942
> Ahg894459 jgi|Araly1|894459|Al_scaffold_0006_2455
Length=1101
Score = 433 bits (234), Expect = 2e-120
Identities = 441/536 (82%), Gaps = 33/536 (6%)
Strand=Plus/Plus
Query 92 CAGTGGAGGAGGGTGTGAAAGTCTTCACGGTGGCAGATCTGAAGAAAGCGACTAATG-AT 150
|||||||||| ||||||||||| ||||| ||| || |||||||||||||| || | ||
Sbjct 158 CAGTGGAGGAAGGTGTGAAAGTATTCACTATGGTGGAGCTGAAGAAAGCGACCAA-GAAT 216
Query 151 TTCGGAAACCAGATGG-AACTAGGAG--AG--A--GC----T--T---GGGATACATCAA 194
|| ||||| ||| || || |||||| || | || | | |||||| |||||
Sbjct 217 TTTGGAAAGGAGAGGGTAA-TAGGAGACAGCTATGGCGAAGTAGTGAGGGGATATATCAA 275
Query 195 TCCCAAAACGTTATCTCCGGCCAAGAAAGGTGTTGGCATGGCCGTCGCGGTCAAGAAAAT 254
|||||| || |||||||| || ||| |||||||||||||||||||||| || |||| | |
Sbjct 276 TCCCAAGACTTTATCTCCAGCTAAGGAAGGTGTTGGCATGGCCGTCGCCGTTAAGAGATT 335
Query 255 TTACTTAGCCA-ATGAACAAGCTTTTCAAGATTGGCTTGTTGACGTAGAGTTTCTACGAC 313
||||||| | |||| |||| || ||| | || ||||||||| | ||| |||| ||||
Sbjct 336 TTACTTA-AAATATGAGGAAGCCTTGCAAAAGTGCCTTGTTGACTTGGAGATTCTGCGAC 394
Query 314 ATAACTCTCATCCAAGCTTGGTGAAGCTAATTGGCTA-----CT-GTTATGATCGTGATA 367
|||||||||||||||||||||||||||| ||||| || | ||||||||| ||| |
Sbjct 395 ATAACTCTCATCCAAGCTTGGTGAAGCTCATTGGTTATGGTTATGGTTATGATCATGAAA 454
Query 368 TGTTGTTTATTGTTTCTGAATACTTTCCAAATGGAAGCTTAGGAA-GTTACATCAGTA-G 425
|||||| ||||||||||||||||||||||| ||||||||| ||| ||||||| || |
Sbjct 455 AGTTGTTCATTGTTTCTGAATACTTTCCAAACGGAAGCTTA-GAACGTTACATTTTTAGG 513
Query 426 AGATAGTCGTCCAAAGTCATTGCCGTGGGAGACACGACTTAAGATATCCATAGGAGCGGC 485
| | ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 514 A-AGAGTCGTCCAAAGTCATTGCCGTGGGAGACACGACTTAAGATATCCATAGAAGGGGC 572
Query 486 TCAGTGTCTTGCCTTCTTGCACTCTAGGAAGCAAGCCGGTCTATACCGCAGATATCTCAC 545
|| ||||||||||||||||||||||||||| ||| |||||| || |||| || ||||||
Sbjct 573 TCGGTGTCTTGCCTTCTTGCACTCTAGGAAAAAAGACGGTCTCTATCGCACATGTCTCAC 632
Query 546 TGCTTCGAAA-ATCCTGCTCGACTCGGACTTCAACGCAAGAGTTTCCTATTTTGGA 600
||||| | || |||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 633 TGCTT-GTAATATCCTGCTTGATTCGGAGTTCAACGCAAGAGTTTCTTATTTTGGA 687
Score = 267 bits (144), Expect = 2e-70
Identities = 241/285 (85%), Gaps = 18/285 (6%)
Strand=Plus/Plus
Query 703 TCGAACATGGCGGGCGATGTGTATAGCTTTGGTGTTATACTACTTAAAATGTTAACTGGT 762
||| ||||||| |||||||| || ||||| ||||||||||||||| | || |||||||||
Sbjct 826 TCGCACATGGCAGGCGATGTATACAGCTTCGGTGTTATACTACTTGAGATCTTAACTGGT 885
Query 763 TTAGGA-AAAGACC-T-CA-CAAT-CTCAGCAAAGCGAGaaataaaaaat-aaaaaGTAC 816
|| || ||| || | || | || || |||||||| || || | ||||| ||||| |
Sbjct 886 TT--GAGAAA-CCCGTGCATC-ATCCT-AGCAAAGCAAGCAACACAAAATGGAAAAG-AA 939
Query 817 AACATTGTGGAGATGATCGATCCAGATTTGA-AGAATAGCTATCCACTTGAAGCGGGAAG 875
||||||| ||||| |||||||||||||| | ||||||||||||| |||| ||||||||
Sbjct 940 AACATTGCAGAGATTATCGATCCAGATTT-AGAGAATAGCTATCCTCTTGCAGCGGGAAA 998
Query 876 ACTTATGTGCGAGCTTATTAAACAATGCCTAGAGGTA-GACCCGAAGATGCGACCAACCA 934
||||||||||||||||| |||||||||||| |||| | |||||||||| |||||||||
Sbjct 999 ACTTATGTGCGAGCTTAGTAAACAATGCCTTGAGG-ACAACCCGAAGATAAGACCAACCA 1057
Query 935 TGCAAGAAGTGCTAGATAATCTGAATGCTATAG-CTCAGATTTGA 978
||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1058 TGCAAGAAGTGCTAGATAATCTGAATGCTATAGGC-CAGATTTGA 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43955723301
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5